jgi.p|Nanoce1779_2|591897, mRNA_5252 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591897
Unique Name	mRNA_5252
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	988
Alignment location	scaffold_12:852412..854629 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591983
Track	FilteredModels2
ProteinId	591897

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:852412..854629 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591897	gene_5252	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591897	mRNA_5252-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5252	CDS_5252	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:852412..854629+
coding sequence from alignment at scaffold_12:852412..854629+

mRNA sequence

>mRNA_5252 ID=mRNA_5252|Name=jgi.p|Nanoce1779_2|591897|organism=Nannochloropsis oceanica|type=mRNA|length=988bp
ACAGGCAACGCCGCTTTGTTCCATTCGAGTCTAAGAGACGTCTTCTCACC
GCGTCTCGGACACCACGATCCGCCACACCACCGGAAGACAGGCATGAATC
GTATCTTTGGGCAGAAGAAGGCCCAGGCACCGATGCCCACGCTGGGCGAG
GCATCCGGGAAAATTGATGGCCGCGTCAAGGGACTCGACGAAAAGATCAA
GGGCATGGAAGATGAGTTGAGGAAGTACCAAGGTTTGATCAAGAGAAGCA
CGGGTGCGGCACAAGCCAATCATAAGCGACGGGCCCTCGATGTTCTCAAG
CGAAAGAAGATGTTCGAGCAACAGCGGGATCAGCTCGCGGCCCAGTCGTT
TAATGTCGATCAGACAAATTTCGCCTTGGAGAGCGTCAAGGACACCATCA
CCACGGTGGATGCGATGAAGGGGGCTCACAAGGCGCTCAAGACGGAGGTC
AAGAAGGTCAAGATCGACGACATTGAGGACCTGACTGACGACCTGGCCGA
CATGATGGAGGATATGAATGAGGTCAACGACGCTCTGGGTCGTAATTACG
GCGTGTCGGACGACATTGACGAGGCGGACTTGGACGCAGAGCTGGCCGGG
TTGGAGGACGAGCTAGAGGGAGTGGGGGAGGAGGAAGCTGACGCCGCCGG
GGCGACTGCGGAGACCACACCGTCGTATCTCCTGCCCAGCGAGCCTCTCA
ACACGCCTGAGCCCCAGGCGACCACAGACGAGTTCGGTCTGCCCGTCGCG
CCGCTGCACAATTAGGCGTTTTGTCGGTGTGTTTGTATGTTACATTCATG
TATGGGTATGGATGGATGGATGGATGGATGGATGGATGGATGCGGGATGC
GCTCGGAATAATGACATGTGTTTTTGTTATTCATATGCATGTGGAGGAAT
TCTCAGTGTACCGACATTTTTTTTGTATTATTTATATACATGAGAAGGCG
TGTTCTAAGTGATGAATTATGTATGTAATGGATCCGCC

protein sequence of jgi.p|Nanoce1779_2|591897

>mRNA_5252-protein ID=mRNA_5252-protein|Name=jgi.p|Nanoce1779_2|591897|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MNRIFGQKKAQAPMPTLGEASGKIDGRVKGLDEKIKGMEDELRKYQGLIK
RSTGAAQANHKRRALDVLKRKKMFEQQRDQLAAQSFNVDQTNFALESVKD
TITTVDAMKGAHKALKTEVKKVKIDDIEDLTDDLADMMEDMNEVNDALGR
NYGVSDDIDEADLDAELAGLEDELEGVGEEEADAAGATAETTPSYLLPSE
PLNTPEPQATTDEFGLPVAPLHN*

mRNA from alignment at scaffold_12:852412..854629+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5252 ID=mRNA_5252|Name=jgi.p|Nanoce1779_2|591897|organism=Nannochloropsis oceanica|type=mRNA|length=2218bp|location=Sequence derived from alignment at scaffold_12:852412..854629+ (Nannochloropsis oceanica)
ACAGGCAACGCCGCTTTGTTCCATTCGAGTCTAAGAGACGTCTTCTCACC
GCGTCTCGGACACCACGATCCGCCACACCACCGGAAGACAGGCATGAATC
GTATCTTTGGGCAGAAGAAGGCCCAGGCACCGATGCCCACGCTGGGTAAG
AAAAAGCGGGTTTGAGGGAGGGACCGAGGCAAGGGAGGGACCGAGGCAAG
GGAAGGAGCCACGTAAAAAGGCAGGGCATGACAGGATGCTTGAGACTGCG
GTATTACAAGGCATACAGACATAAATAATCCCTATGCACCTCCATTTGGA
GTGCATGGAAGTGGAAGAGTGAGTGAGAATTTGTCTTGTAGAGGCGAATC
ACGTCAACCTAGCCAGGGTCTCGCTTGCCTGCTGGCGCATAAGGCAAAGC
GAACGGCAAACTTGCACTCCCTCACACACCCACTCTATTCCTATCCGTCG
CTTATATCTTTACAGGCGAGGCATCCGGGAAAATTGATGGCCGCGTCAAG
GGACTCGACGAAAAGGTAGGAATACTACACTGGGTTGACTCAAACCGCTT
TTTCTACCTCTCATTCATTCCTCCCTCTTTTCCTCCTTCCTTTCTCCCTC
CCCCTTGTCACACTTTTAGATCAAGGGCATGGAAGATGAGTTGAGGAAGT
ACCAAGGTTTGATCAAGAGAAGCACGGGTGCGGCACAAGCCAATCATAAG
CGACGGGCCCTCGATGTACGTCTTTAGTGGGAGGGAGGAAGTGAGGGAGG
GAGCGAGGATGAACACAAAATGGGCGAGCGAGACGTGATCGTGAGTGTGT
TACAGGATCATGCCCTGATGCTATATTGTCTTAACCACGTGTGTATGTGT
GCCATCATTATCGCATAATCACAAGCATTCTGCCATCGTCTCAACCCTTG
GGTGGATGGGTGACGTACTCATTGTCGCACCCCTCCCTCCTTCCCTCCCT
CCCTCCCTCCCTGCCTCCCTCCCTCTCTTTTTCCTTCCCGCCTTCCCAAT
CCCACAGGTTCTCAAGCGAAAGAAGATGTTCGAGCAACAGCGGGATCAGC
TCGCGGCCCAGTCGTTTAATGTCGATCAGACAAATTTCGCCTTGGAGAGC
GTCAAGGTAAGACTAAGACATTACTCGGCCTCACGCCACCACCAGCCTTC
TTACATTCCTTTCTCCCTCCTCACTCCCCAGGACACCATCACCACGGTGG
ATGCGATGAAGGGGGCTCACAAGGCGCTCAAGACGGAGGTCAAGAAGGTC
AAGATCGACGACATTGAGGTACAAAGGGAGAGAGCGCAAGCCGAGGGAGG
GATAAAGGGAAGGAGGGGGGGGGGGAGGGTGATGCCGCCGCCGGGTCTCT
GGTTTTAAAAAAAGAGGGTCGATAAGAAGGCTCCATCACTCCTGCAGAGC
GTTCTCGCTACCAGTAGAAGAAGCGTATTTTGCAAGTATTGAGGCATGGA
AGCATCGCATTGCCTTCAGCTCGTTAGACCAAACACGCACCGTCCGCCCT
CCTTCCCTCCCTCCCTCCCTCCCCAGGACCTGACTGACGACCTGGCCGAC
ATGATGGAGGATATGAATGAGGTCAACGACGCTCTGGGTCGTAATTACGG
CGTGTCGGACGACATTGACGAGGCGGACTTGGACGCAGAGCTGGCCGGGT
TGGAGGACGAGCTAGAGGGAGTGGGGGAGGAGGAAGGTGAGGCATGCGGG
AGGGGAGAGGGTGGAGAGACGGACGGGAGGGAGGGAGGAGGGGATGGGGA
TGAGATCACCCACCTTGGTGTTTCTCAGCTGCCGAAGCCGTCATTGACTT
ATTTCTCACGATCCCTCCCTCCCTCCCTCCTGTCCCCCTTCCTCGCCTTA
TCACCTCTTCCTCACAGCTGACGCCGCCGGGGCGACTGCGGAGACCACAC
CGTCGTATCTCCTGCCCAGCGAGCCTCTCAACACGCCTGAGCCCCAGGCG
ACCACAGACGAGTTCGGTCTGCCCGTCGCGCCGCTGCACAATTAGGCGTT
TTGTCGGTGTGTTTGTATGTTACATTCATGTATGGGTATGGATGGATGGA
TGGATGGATGGATGGATGGATGCGGGATGCGCTCGGAATAATGACATGTG
TTTTTGTTATTCATATGCATGTGGAGGAATTCTCAGTGTACCGACATTTT
TTTTGTATTATTTATATACATGAGAAGGCGTGTTCTAAGTGATGAATTAT
GTATGTAATGGATCCGCC

Coding sequence (CDS) from alignment at scaffold_12:852412..854629+

>mRNA_5252 ID=mRNA_5252|Name=jgi.p|Nanoce1779_2|591897|organism=Nannochloropsis oceanica|type=CDS|length=4704bp|location=Sequence derived from alignment at scaffold_12:852412..854629+ (Nannochloropsis oceanica)
ATGAATCGTATCTTTGGGCAGAAGAAGGCCCAGGCACCGATGCCCACGCT
GGGCGAGGCATCCGGGAAAATTGATGGCCGCGTCAAGGGACTCGACGAAA
AGATCAAGGGCATGGAAGATGAGTTGAGGAAGTACCAAGGTTTGATCAAG
AGAAGCACGGGTGCGGCACAAGCCAATCATAAGCGACGGGCCCTCGATGT
TCTCAAGCGAAAGAAGATGTTCGAGCAACAGCGGGATCAGCTCGCGGCCC
AGTCGTTTAATGTCGATCAGACAAATTTCGCCTTGGAGAGCGTCAAGGAC
ACCATCACCACGGTGGATGCGATGAAGGGGGCTCACAAGGCGCTCAAGAC
GGAGGTCAAGAAGGTCAAGATCGACGACATTGAGGACCTGACTGACGACC
TGGCCGACATGATGGAGGATATGAATGAGGTCAACGACGCTCTGGGTCGT
AATTACGGCGTGTCGGACGACATTGACGAGGCGGACTTGGACGCAGAGCT
GGCCGGGTTGGAGGACGAGCTAGAGGGAGTGGGGGAGGAGGAAGCTGACG
CCGCCGGGGCGACTGCGGAGACCACACCGTCGTATCTCCTGCCCAGCGAG
CCTCTCAACACGCCTGAGCCCCAGGCGACCACAGACGAGTTCGGTCTGCC
CGTCGCGCCGCTGCACAATTAGATGAATCGTATCTTTGGGCAGAAGAAGG
CCCAGGCACCGATGCCCACGCTGGGCGAGGCATCCGGGAAAATTGATGGC
CGCGTCAAGGGACTCGACGAAAAGATCAAGGGCATGGAAGATGAGTTGAG
GAAGTACCAAGGTTTGATCAAGAGAAGCACGGGTGCGGCACAAGCCAATC
ATAAGCGACGGGCCCTCGATGTTCTCAAGCGAAAGAAGATGTTCGAGCAA
CAGCGGGATCAGCTCGCGGCCCAGTCGTTTAATGTCGATCAGACAAATTT
CGCCTTGGAGAGCGTCAAGGACACCATCACCACGGTGGATGCGATGAAGG
GGGCTCACAAGGCGCTCAAGACGGAGGTCAAGAAGGTCAAGATCGACGAC
ATTGAGGACCTGACTGACGACCTGGCCGACATGATGGAGGATATGAATGA
GGTCAACGACGCTCTGGGTCGTAATTACGGCGTGTCGGACGACATTGACG
AGGCGGACTTGGACGCAGAGCTGGCCGGGTTGGAGGACGAGCTAGAGGGA
GTGGGGGAGGAGGAAGCTGACGCCGCCGGGGCGACTGCGGAGACCACACC
GTCGTATCTCCTGCCCAGCGAGCCTCTCAACACGCCTGAGCCCCAGGCGA
CCACAGACGAGTTCGGTCTGCCCGTCGCGCCGCTGCACAATTAGATGAAT
CGTATCTTTGGGCAGAAGAAGGCCCAGGCACCGATGCCCACGCTGGGCGA
GGCATCCGGGAAAATTGATGGCCGCGTCAAGGGACTCGACGAAAAGATCA
AGGGCATGGAAGATGAGTTGAGGAAGTACCAAGGTTTGATCAAGAGAAGC
ACGGGTGCGGCACAAGCCAATCATAAGCGACGGGCCCTCGATGTTCTCAA
GCGAAAGAAGATGTTCGAGCAACAGCGGGATCAGCTCGCGGCCCAGTCGT
TTAATGTCGATCAGACAAATTTCGCCTTGGAGAGCGTCAAGGACACCATC
ACCACGGTGGATGCGATGAAGGGGGCTCACAAGGCGCTCAAGACGGAGGT
CAAGAAGGTCAAGATCGACGACATTGAGGACCTGACTGACGACCTGGCCG
ACATGATGGAGGATATGAATGAGGTCAACGACGCTCTGGGTCGTAATTAC
GGCGTGTCGGACGACATTGACGAGGCGGACTTGGACGCAGAGCTGGCCGG
GTTGGAGGACGAGCTAGAGGGAGTGGGGGAGGAGGAAGCTGACGCCGCCG
GGGCGACTGCGGAGACCACACCGTCGTATCTCCTGCCCAGCGAGCCTCTC
AACACGCCTGAGCCCCAGGCGACCACAGACGAGTTCGGTCTGCCCGTCGC
GCCGCTGCACAATTAGATGAATCGTATCTTTGGGCAGAAGAAGGCCCAGG
CACCGATGCCCACGCTGGGCGAGGCATCCGGGAAAATTGATGGCCGCGTC
AAGGGACTCGACGAAAAGATCAAGGGCATGGAAGATGAGTTGAGGAAGTA
CCAAGGTTTGATCAAGAGAAGCACGGGTGCGGCACAAGCCAATCATAAGC
GACGGGCCCTCGATGTTCTCAAGCGAAAGAAGATGTTCGAGCAACAGCGG
GATCAGCTCGCGGCCCAGTCGTTTAATGTCGATCAGACAAATTTCGCCTT
GGAGAGCGTCAAGGACACCATCACCACGGTGGATGCGATGAAGGGGGCTC
ACAAGGCGCTCAAGACGGAGGTCAAGAAGGTCAAGATCGACGACATTGAG
GACCTGACTGACGACCTGGCCGACATGATGGAGGATATGAATGAGGTCAA
CGACGCTCTGGGTCGTAATTACGGCGTGTCGGACGACATTGACGAGGCGG
ACTTGGACGCAGAGCTGGCCGGGTTGGAGGACGAGCTAGAGGGAGTGGGG
GAGGAGGAAGCTGACGCCGCCGGGGCGACTGCGGAGACCACACCGTCGTA
TCTCCTGCCCAGCGAGCCTCTCAACACGCCTGAGCCCCAGGCGACCACAG
ACGAGTTCGGTCTGCCCGTCGCGCCGCTGCACAATTAGATGAATCGTATC
TTTGGGCAGAAGAAGGCCCAGGCACCGATGCCCACGCTGGGCGAGGCATC
CGGGAAAATTGATGGCCGCGTCAAGGGACTCGACGAAAAGATCAAGGGCA
TGGAAGATGAGTTGAGGAAGTACCAAGGTTTGATCAAGAGAAGCACGGGT
GCGGCACAAGCCAATCATAAGCGACGGGCCCTCGATGTTCTCAAGCGAAA
GAAGATGTTCGAGCAACAGCGGGATCAGCTCGCGGCCCAGTCGTTTAATG
TCGATCAGACAAATTTCGCCTTGGAGAGCGTCAAGGACACCATCACCACG
GTGGATGCGATGAAGGGGGCTCACAAGGCGCTCAAGACGGAGGTCAAGAA
GGTCAAGATCGACGACATTGAGGACCTGACTGACGACCTGGCCGACATGA
TGGAGGATATGAATGAGGTCAACGACGCTCTGGGTCGTAATTACGGCGTG
TCGGACGACATTGACGAGGCGGACTTGGACGCAGAGCTGGCCGGGTTGGA
GGACGAGCTAGAGGGAGTGGGGGAGGAGGAAGCTGACGCCGCCGGGGCGA
CTGCGGAGACCACACCGTCGTATCTCCTGCCCAGCGAGCCTCTCAACACG
CCTGAGCCCCAGGCGACCACAGACGAGTTCGGTCTGCCCGTCGCGCCGCT
GCACAATTAGATGAATCGTATCTTTGGGCAGAAGAAGGCCCAGGCACCGA
TGCCCACGCTGGGCGAGGCATCCGGGAAAATTGATGGCCGCGTCAAGGGA
CTCGACGAAAAGATCAAGGGCATGGAAGATGAGTTGAGGAAGTACCAAGG
TTTGATCAAGAGAAGCACGGGTGCGGCACAAGCCAATCATAAGCGACGGG
CCCTCGATGTTCTCAAGCGAAAGAAGATGTTCGAGCAACAGCGGGATCAG
CTCGCGGCCCAGTCGTTTAATGTCGATCAGACAAATTTCGCCTTGGAGAG
CGTCAAGGACACCATCACCACGGTGGATGCGATGAAGGGGGCTCACAAGG
CGCTCAAGACGGAGGTCAAGAAGGTCAAGATCGACGACATTGAGGACCTG
ACTGACGACCTGGCCGACATGATGGAGGATATGAATGAGGTCAACGACGC
TCTGGGTCGTAATTACGGCGTGTCGGACGACATTGACGAGGCGGACTTGG
ACGCAGAGCTGGCCGGGTTGGAGGACGAGCTAGAGGGAGTGGGGGAGGAG
GAAGCTGACGCCGCCGGGGCGACTGCGGAGACCACACCGTCGTATCTCCT
GCCCAGCGAGCCTCTCAACACGCCTGAGCCCCAGGCGACCACAGACGAGT
TCGGTCTGCCCGTCGCGCCGCTGCACAATTAGATGAATCGTATCTTTGGG
CAGAAGAAGGCCCAGGCACCGATGCCCACGCTGGGCGAGGCATCCGGGAA
AATTGATGGCCGCGTCAAGGGACTCGACGAAAAGATCAAGGGCATGGAAG
ATGAGTTGAGGAAGTACCAAGGTTTGATCAAGAGAAGCACGGGTGCGGCA
CAAGCCAATCATAAGCGACGGGCCCTCGATGTTCTCAAGCGAAAGAAGAT
GTTCGAGCAACAGCGGGATCAGCTCGCGGCCCAGTCGTTTAATGTCGATC
AGACAAATTTCGCCTTGGAGAGCGTCAAGGACACCATCACCACGGTGGAT
GCGATGAAGGGGGCTCACAAGGCGCTCAAGACGGAGGTCAAGAAGGTCAA
GATCGACGACATTGAGGACCTGACTGACGACCTGGCCGACATGATGGAGG
ATATGAATGAGGTCAACGACGCTCTGGGTCGTAATTACGGCGTGTCGGAC
GACATTGACGAGGCGGACTTGGACGCAGAGCTGGCCGGGTTGGAGGACGA
GCTAGAGGGAGTGGGGGAGGAGGAAGCTGACGCCGCCGGGGCGACTGCGG
AGACCACACCGTCGTATCTCCTGCCCAGCGAGCCTCTCAACACGCCTGAG
CCCCAGGCGACCACAGACGAGTTCGGTCTGCCCGTCGCGCCGCTGCACAA
TTAG

Synonyms

Publications