jgi.p|Nanoce1779_2|591895, mRNA_5251 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591895
Unique NamemRNA_5251
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length843
Alignment locationscaffold_12:851253..852095 +

Link to JBrowse

Properties
Property NameValue
TranscriptId591981
TrackFilteredModels2
ProteinId591895
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:851253..852095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591895gene_5251Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591895mRNA_5251-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5251CDS_5251Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5251 ID=mRNA_5251|Name=jgi.p|Nanoce1779_2|591895|organism=Nannochloropsis oceanica|type=mRNA|length=843bp
GGGAGGAAGAAAGGGGGTGGAAGAGGGAGGGGTGGCGGTGGTGGTGGAAG
GATGCGAGATGGCGCGACGGATTCGGCGGCCACTATAGCAGGGGGAGGAG
GAGGAGAAATCAGGAGCGAGGGTCGAGTGGCGGCAGATGATGATAAGGTG
GTATTGTGGCTGCAGATGAAGGGACACAAGATGCAAGGCTACAAGATATT
TAAGACTCACTTGTTCGTGACCAGCTTCGAGCAATTCGCCTTGGCCAAGG
GGCTAGATATTGATGCCCTTACCTTTACCTTCAAGGGCGACGAGATTTCC
AAGCTAGATCAACCGCGGTATGTGGGCATGGCCTGTTGCGGGGAGGAGGG
AGAAAAAGACAACATTGTGGTTGTGACAGATAAGAAGAGAGCTGCAGCTG
CGCGGGCTGCGGAGGCGGAGCTGATGAAGAATGCGGCCAAGACGGTAAAG
ATTGTGTTGCAGTGGCAGGGAGGGCAGCAGGAGGTGGAGATGAAGATGCG
GGACACCTTTGGATTGCTGCGGGCGAAATTCGCAGAGGAGAAGAAGGTGG
ATGCGAGTAGAGTGCGGTTTGTGTTTGACGGGGAGGACTTGGGCGAGCAC
GACACGCCAGAGACGTTTGACATGGAGGACGAGGACAAGGTAGATGTGTT
TGGGTTGACTTAAACTGTCCGAGTGAGGAGTGAATGTGGAGAAATGCGCG
AGGGAAGAATGGGGTTAGGGGCTGTGCGTGTGCATGTGAGTTGGTATGCT
GCACGGACTTGCATGTGCTGAAGACGGCTGACCCTATCACGGACTCTCGC
CGCAAATGATAAACGAAAAATGATTGTACCATACAAGGCATCC
back to top

protein sequence of jgi.p|Nanoce1779_2|591895

>mRNA_5251-protein ID=mRNA_5251-protein|Name=jgi.p|Nanoce1779_2|591895|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MRDGATDSAATIAGGGGGEIRSEGRVAADDDKVVLWLQMKGHKMQGYKIF
KTHLFVTSFEQFALAKGLDIDALTFTFKGDEISKLDQPRYVGMACCGEEG
EKDNIVVVTDKKRAAAARAAEAELMKNAAKTVKIVLQWQGGQQEVEMKMR
DTFGLLRAKFAEEKKVDASRVRFVFDGEDLGEHDTPETFDMEDEDKVDVF
GLT*
back to top

mRNA from alignment at scaffold_12:851253..852095+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5251 ID=mRNA_5251|Name=jgi.p|Nanoce1779_2|591895|organism=Nannochloropsis oceanica|type=mRNA|length=843bp|location=Sequence derived from alignment at scaffold_12:851253..852095+ (Nannochloropsis oceanica)
GGGAGGAAGAAAGGGGGTGGAAGAGGGAGGGGTGGCGGTGGTGGTGGAAG
GATGCGAGATGGCGCGACGGATTCGGCGGCCACTATAGCAGGGGGAGGAG
GAGGAGAAATCAGGAGCGAGGGTCGAGTGGCGGCAGATGATGATAAGGTG
GTATTGTGGCTGCAGATGAAGGGACACAAGATGCAAGGCTACAAGATATT
TAAGACTCACTTGTTCGTGACCAGCTTCGAGCAATTCGCCTTGGCCAAGG
GGCTAGATATTGATGCCCTTACCTTTACCTTCAAGGGCGACGAGATTTCC
AAGCTAGATCAACCGCGGTATGTGGGCATGGCCTGTTGCGGGGAGGAGGG
AGAAAAAGACAACATTGTGGTTGTGACAGATAAGAAGAGAGCTGCAGCTG
CGCGGGCTGCGGAGGCGGAGCTGATGAAGAATGCGGCCAAGACGGTAAAG
ATTGTGTTGCAGTGGCAGGGAGGGCAGCAGGAGGTGGAGATGAAGATGCG
GGACACCTTTGGATTGCTGCGGGCGAAATTCGCAGAGGAGAAGAAGGTGG
ATGCGAGTAGAGTGCGGTTTGTGTTTGACGGGGAGGACTTGGGCGAGCAC
GACACGCCAGAGACGTTTGACATGGAGGACGAGGACAAGGTAGATGTGTT
TGGGTTGACTTAAACTGTCCGAGTGAGGAGTGAATGTGGAGAAATGCGCG
AGGGAAGAATGGGGTTAGGGGCTGTGCGTGTGCATGTGAGTTGGTATGCT
GCACGGACTTGCATGTGCTGAAGACGGCTGACCCTATCACGGACTCTCGC
CGCAAATGATAAACGAAAAATGATTGTACCATACAAGGCATCC
back to top

Coding sequence (CDS) from alignment at scaffold_12:851253..852095+

>mRNA_5251 ID=mRNA_5251|Name=jgi.p|Nanoce1779_2|591895|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_12:851253..852095+ (Nannochloropsis oceanica)
ATGCGAGATGGCGCGACGGATTCGGCGGCCACTATAGCAGGGGGAGGAGG
AGGAGAAATCAGGAGCGAGGGTCGAGTGGCGGCAGATGATGATAAGGTGG
TATTGTGGCTGCAGATGAAGGGACACAAGATGCAAGGCTACAAGATATTT
AAGACTCACTTGTTCGTGACCAGCTTCGAGCAATTCGCCTTGGCCAAGGG
GCTAGATATTGATGCCCTTACCTTTACCTTCAAGGGCGACGAGATTTCCA
AGCTAGATCAACCGCGGTATGTGGGCATGGCCTGTTGCGGGGAGGAGGGA
GAAAAAGACAACATTGTGGTTGTGACAGATAAGAAGAGAGCTGCAGCTGC
GCGGGCTGCGGAGGCGGAGCTGATGAAGAATGCGGCCAAGACGGTAAAGA
TTGTGTTGCAGTGGCAGGGAGGGCAGCAGGAGGTGGAGATGAAGATGCGG
GACACCTTTGGATTGCTGCGGGCGAAATTCGCAGAGGAGAAGAAGGTGGA
TGCGAGTAGAGTGCGGTTTGTGTTTGACGGGGAGGACTTGGGCGAGCACG
ACACGCCAGAGACGTTTGACATGGAGGACGAGGACAAGGTAGATGTGTTT
GGGTTGACTTAA
back to top
Synonyms
Publications