jgi.p|Nanoce1779_2|577580, mRNA_525 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577580
Unique NamemRNA_525
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length760
Alignment locationscaffold_3:1272581..1273340 -

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Properties
Property NameValue
TranscriptId577666
TrackFilteredModels2
ProteinId577580
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1272581..1273340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577580gene_525Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577580mRNA_525-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_525CDS_525Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_525 ID=mRNA_525|Name=jgi.p|Nanoce1779_2|577580|organism=Nannochloropsis oceanica|type=mRNA|length=760bp
TCTCCTCCCTACCCTTGGGATGCCCTCCACTGTCACGAACTCCAGCCCCA
ATAACGCCACATCCACCGCCCTCAATGTTACTCTTAAAAGCAACGACGGC
AGCTCCCTTCCAACCCCTCCCTCCCTCCCTCCCTCCTCCTCATCCACATC
TTCAACACAGGCCTCAATCACGTCTTCATCATCCAAGGCCTGAACACCTG
TCATGGTCGCCGCCACTGCCCGCAATGCAGCTTCATTCCTTCCTCTCCTC
CTCCCTCCTCTCCCTCTCTCCCGTCCTCCTCCTCCTGTTCCTGCCACGCC
TGCCCTCGCCATCCTTGATACCTGCATCGTCAACACCCTCTCCCCTCCCC
CCTCTCCTTCCTCACCCCCTTCGTCGCCCGTCCATCCCTGCGACGGAACG
ACCACGGTGCTACTCCTACTGCTACTACAACTGCCTCTGCGCAAGACTGT
CGTTGCTGTACGTCTCGTCGGCTCCAGCGACTCGACAAGCGGCCATAGCA
TGTTCTTACCCTGCTGCTGCTCCTCGTCCTCGTCCCCGTCCCCCTCCTCT
TCCGCCGAAGAAGAAGAGAAGGGAATTGCTGACATGGAAGAGAGAGAAGA
GTAGGAAGGAGGGGAAAAGGAGGGAGGACATTCTTTCTCAGGCGCCTGTC
TGAATTTGAATCCTTCCCACCATCCCTCCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTTGTTCTCTCCTCCCTTACTCCGCTTCTTCGTCTTTGCCACCCC
ACGTACAAGC
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protein sequence of jgi.p|Nanoce1779_2|577580

>mRNA_525-protein ID=mRNA_525-protein|Name=jgi.p|Nanoce1779_2|577580|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MLLLKATTAAPFQPLPPSLPPPHPHLQHRPQSRLHHPRPEHLSWSPPLPA
MQLHSFLSSSLLSLSPVLLLLFLPRLPSPSLIPASSTPSPLPPLLPHPLR
RPSIPATERPRCYSYCYYNCLCARLSLLYVSSAPATRQAAIACSYPAAAP
RPRPRPPPLPPKKKRRELLTWKREKSRKEGKRREDILSQAPV*
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mRNA from alignment at scaffold_3:1272581..1273340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_525 ID=mRNA_525|Name=jgi.p|Nanoce1779_2|577580|organism=Nannochloropsis oceanica|type=mRNA|length=760bp|location=Sequence derived from alignment at scaffold_3:1272581..1273340- (Nannochloropsis oceanica)
TCTCCTCCCTACCCTTGGGATGCCCTCCACTGTCACGAACTCCAGCCCCA ATAACGCCACATCCACCGCCCTCAATGTTACTCTTAAAAGCAACGACGGC AGCTCCCTTCCAACCCCTCCCTCCCTCCCTCCCTCCTCCTCATCCACATC TTCAACACAGGCCTCAATCACGTCTTCATCATCCAAGGCCTGAACACCTG TCATGGTCGCCGCCACTGCCCGCAATGCAGCTTCATTCCTTCCTCTCCTC CTCCCTCCTCTCCCTCTCTCCCGTCCTCCTCCTCCTGTTCCTGCCACGCC TGCCCTCGCCATCCTTGATACCTGCATCGTCAACACCCTCTCCCCTCCCC CCTCTCCTTCCTCACCCCCTTCGTCGCCCGTCCATCCCTGCGACGGAACG ACCACGGTGCTACTCCTACTGCTACTACAACTGCCTCTGCGCAAGACTGT CGTTGCTGTACGTCTCGTCGGCTCCAGCGACTCGACAAGCGGCCATAGCA TGTTCTTACCCTGCTGCTGCTCCTCGTCCTCGTCCCCGTCCCCCTCCTCT TCCGCCGAAGAAGAAGAGAAGGGAATTGCTGACATGGAAGAGAGAGAAGA GTAGGAAGGAGGGGAAAAGGAGGGAGGACATTCTTTCTCAGGCGCCTGTC TGAATTTGAATCCTTCCCACCATCCCTCCTGCTGCTGCTGCTGCTGCTGC TGCTGCTTGTTCTCTCCTCCCTTACTCCGCTTCTTCGTCTTTGCCACCCC ACGTACAAGC
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Coding sequence (CDS) from alignment at scaffold_3:1272581..1273340-

>mRNA_525 ID=mRNA_525|Name=jgi.p|Nanoce1779_2|577580|organism=Nannochloropsis oceanica|type=CDS|length=579bp|location=Sequence derived from alignment at scaffold_3:1272581..1273340- (Nannochloropsis oceanica)
ATGTTACTCTTAAAAGCAACGACGGCAGCTCCCTTCCAACCCCTCCCTCC
CTCCCTCCCTCCTCCTCATCCACATCTTCAACACAGGCCTCAATCACGTC
TTCATCATCCAAGGCCTGAACACCTGTCATGGTCGCCGCCACTGCCCGCA
ATGCAGCTTCATTCCTTCCTCTCCTCCTCCCTCCTCTCCCTCTCTCCCGT
CCTCCTCCTCCTGTTCCTGCCACGCCTGCCCTCGCCATCCTTGATACCTG
CATCGTCAACACCCTCTCCCCTCCCCCCTCTCCTTCCTCACCCCCTTCGT
CGCCCGTCCATCCCTGCGACGGAACGACCACGGTGCTACTCCTACTGCTA
CTACAACTGCCTCTGCGCAAGACTGTCGTTGCTGTACGTCTCGTCGGCTC
CAGCGACTCGACAAGCGGCCATAGCATGTTCTTACCCTGCTGCTGCTCCT
CGTCCTCGTCCCCGTCCCCCTCCTCTTCCGCCGAAGAAGAAGAGAAGGGA
ATTGCTGACATGGAAGAGAGAGAAGAGTAGGAAGGAGGGGAAAAGGAGGG
AGGACATTCTTTCTCAGGCGCCTGTCTGA
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Synonyms
Publications