jgi.p|Nanoce1779_2|591892, mRNA_5249 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591892
Unique Name	mRNA_5249
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1711
Alignment location	scaffold_12:848319..850029 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591978
Track	FilteredModels2
ProteinId	591892

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:848319..850029 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591892	gene_5249	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591892	mRNA_5249-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5249	CDS_5249	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:848319..850029+
coding sequence from alignment at scaffold_12:848319..850029+

mRNA sequence

>mRNA_5249 ID=mRNA_5249|Name=jgi.p|Nanoce1779_2|591892|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp
AAGGAGGCATAGGCGCAGCTCCTCCTGATGCCTTACTTGCACCGCTGCTA
TTGGTGCTGGTTATATGACTGCTGCTGCTGCTACTGCTGCTTCTATTGCT
TCCAGACGGCGAGAAGGCGGACGGAGCTTTGGTGGCGAAAGGGGGAATCG
GTGCGGCTCTGCTAGGTGAGGGTGCCGGGACAAGCGAGGGTAAAGGCGCG
ACAGCATTCTGCTGCTGCTGCTCTCCATTAGTGGTGCTGCTACCAAAGCT
GCTCTGACCTCCAAAAGAGGAAGCAGTAACCGCGCTACTGAGGGATGACG
TGCTGCCGAATGGTGGCAAGGACCCAGCTGCCCCTTTTTTGCCAGCCTCA
AACGAGCCAACGCCATCCGTTCCTCCACCATCACCACCGCCACTACTACC
AGCAATGGCAGTAGCAGCACCAGTGGGGAAGGAAAAGGCAGAAGACGACG
ACGATGCCGAGTGCGCCTGGCTCCCAAAGGCCCCGGCGGTACCGCTGTAA
TTGCTCTTCTTGTCTTTGGTAATGGCCAGACAGCCCATGGTGGCGAGGTT
TGCGGCGATGGTAAGGCCAAAAGAAGACGTTTGTGCAGCTGCCAGTGTTT
CTCCTGCTGCTGTGGACGGGGCCTCATCTCCCTCTTCGTCGCTCTCCGTT
TCAATTCCAACCCCACCTGCATCTTCCTCACTGTCGCTGCTGTCGTCCCT
CTTGTCCTTCATCAGCCTTCCTCCGCCTGCTGGAAAGCTGGGCCATACGT
GTTTCTTTTCTTCTGCGGTTGTGGTAGTGACACAAATACCAGTGCTTCCG
AAGGACAGCATCGGCTTTCCAATTCCCATCCCGAAGCCGCCCGACATTGC
ATCGACCTCGCCACCACTGCTGCTGCTGCTACTGCTTCCGCCACCGCCAA
AAAAAGATGGACGCGAGGCAGCTCCAAAGCCAGTTTTACTCGTATTAAAC
CCACTCCCACTGGCGGCCGCGGCCTTTGCGAACAGGTTGCTGTCACCTCC
AATTCCACCAAAGGAAGACGAGCCAAACCTACCATCACCACCGCCGGAAA
TCGCAAAGCTGGCAAATCCACCGCTCCTGCAGCCACTGTCACTACCGTTA
CTATTTGCGCTCGGTGTTGTCATCACATGCGTCTTCAGTTCTAGCGACGA
GGAGGAAACTGAAGCTGGGCCTGCGCTGCTGCCAAAGGGAGCTGGGGCTG
GGGGAGGGGAAGCTTCCGCGTCAAGCACCACAGCCGTCGACAATGGTTTA
CCCAAGGGTGGTGCTACAGTCGCAGCCGGTGGCACAGGTGCTGCCGCTGG
GGTGAATGATACTACCTTTTCCTCCTGCAAAGTGGGAATCGCGCTATTTG
TGAGGGGAGGGTGCTGAAAGGCGGGTTTCTTGCGAGAAGCCGGCGTAGGG
CGCGGAGGAGGGGGGTTGGAAAAGCATCCCTTTTCTTCCAGTTCCGTGAT
CTTGGCCTGAAGCTCCGCCCAGGCTGCACTGAAGCCAGGCAAATCCTTTT
TCTTCCTCTTGGGGGTCATAGTATTGGATGGTGCCATGGTTGAGGCAGCT
GTATGGTTTGTAAGTGTGGTGGTTGGCAGAAGCATTGGGTGGGATGATGG
GGACTCGGAGGCTGCGATGCAAACCGTTCGGACGCCCTATTAAAAAGTCA
GGGGCCCAGTATGCCGTGGAAGCATTCGGGCATGGTGATAGAGCTGATGC
GGGGTCAAATT

protein sequence of jgi.p|Nanoce1779_2|591892

>mRNA_5249-protein ID=mRNA_5249-protein|Name=jgi.p|Nanoce1779_2|591892|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MARQPMVARFAAMVRPKEDVCAAASVSPAAVDGASSPSSSLSVSIPTPPA
SSSLSLLSSLLSFISLPPPAGKLGHTCFFSSAVVVVTQIPVLPKDSIGFP
IPIPKPPDIASTSPPLLLLLLLPPPPKKDGREAAPKPVLLVLNPLPLAAA
AFANRLLSPPIPPKEDEPNLPSPPPEIAKLANPPLLQPLSLPLLFALGVV
ITCVFSSSDEEETEAGPALLPKGAGAGGGEASASSTTAVDNGLPKGGATV
AAGGTGAAAGVNDTTFSSCKVGIALFVRGGC*

mRNA from alignment at scaffold_12:848319..850029+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5249 ID=mRNA_5249|Name=jgi.p|Nanoce1779_2|591892|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp|location=Sequence derived from alignment at scaffold_12:848319..850029+ (Nannochloropsis oceanica)
AAGGAGGCATAGGCGCAGCTCCTCCTGATGCCTTACTTGCACCGCTGCTA
TTGGTGCTGGTTATATGACTGCTGCTGCTGCTACTGCTGCTTCTATTGCT
TCCAGACGGCGAGAAGGCGGACGGAGCTTTGGTGGCGAAAGGGGGAATCG
GTGCGGCTCTGCTAGGTGAGGGTGCCGGGACAAGCGAGGGTAAAGGCGCG
ACAGCATTCTGCTGCTGCTGCTCTCCATTAGTGGTGCTGCTACCAAAGCT
GCTCTGACCTCCAAAAGAGGAAGCAGTAACCGCGCTACTGAGGGATGACG
TGCTGCCGAATGGTGGCAAGGACCCAGCTGCCCCTTTTTTGCCAGCCTCA
AACGAGCCAACGCCATCCGTTCCTCCACCATCACCACCGCCACTACTACC
AGCAATGGCAGTAGCAGCACCAGTGGGGAAGGAAAAGGCAGAAGACGACG
ACGATGCCGAGTGCGCCTGGCTCCCAAAGGCCCCGGCGGTACCGCTGTAA
TTGCTCTTCTTGTCTTTGGTAATGGCCAGACAGCCCATGGTGGCGAGGTT
TGCGGCGATGGTAAGGCCAAAAGAAGACGTTTGTGCAGCTGCCAGTGTTT
CTCCTGCTGCTGTGGACGGGGCCTCATCTCCCTCTTCGTCGCTCTCCGTT
TCAATTCCAACCCCACCTGCATCTTCCTCACTGTCGCTGCTGTCGTCCCT
CTTGTCCTTCATCAGCCTTCCTCCGCCTGCTGGAAAGCTGGGCCATACGT
GTTTCTTTTCTTCTGCGGTTGTGGTAGTGACACAAATACCAGTGCTTCCG
AAGGACAGCATCGGCTTTCCAATTCCCATCCCGAAGCCGCCCGACATTGC
ATCGACCTCGCCACCACTGCTGCTGCTGCTACTGCTTCCGCCACCGCCAA
AAAAAGATGGACGCGAGGCAGCTCCAAAGCCAGTTTTACTCGTATTAAAC
CCACTCCCACTGGCGGCCGCGGCCTTTGCGAACAGGTTGCTGTCACCTCC
AATTCCACCAAAGGAAGACGAGCCAAACCTACCATCACCACCGCCGGAAA
TCGCAAAGCTGGCAAATCCACCGCTCCTGCAGCCACTGTCACTACCGTTA
CTATTTGCGCTCGGTGTTGTCATCACATGCGTCTTCAGTTCTAGCGACGA
GGAGGAAACTGAAGCTGGGCCTGCGCTGCTGCCAAAGGGAGCTGGGGCTG
GGGGAGGGGAAGCTTCCGCGTCAAGCACCACAGCCGTCGACAATGGTTTA
CCCAAGGGTGGTGCTACAGTCGCAGCCGGTGGCACAGGTGCTGCCGCTGG
GGTGAATGATACTACCTTTTCCTCCTGCAAAGTGGGAATCGCGCTATTTG
TGAGGGGAGGGTGCTGAAAGGCGGGTTTCTTGCGAGAAGCCGGCGTAGGG
CGCGGAGGAGGGGGGTTGGAAAAGCATCCCTTTTCTTCCAGTTCCGTGAT
CTTGGCCTGAAGCTCCGCCCAGGCTGCACTGAAGCCAGGCAAATCCTTTT
TCTTCCTCTTGGGGGTCATAGTATTGGATGGTGCCATGGTTGAGGCAGCT
GTATGGTTTGTAAGTGTGGTGGTTGGCAGAAGCATTGGGTGGGATGATGG
GGACTCGGAGGCTGCGATGCAAACCGTTCGGACGCCCTATTAAAAAGTCA
GGGGCCCAGTATGCCGTGGAAGCATTCGGGCATGGTGATAGAGCTGATGC
GGGGTCAAATT

Coding sequence (CDS) from alignment at scaffold_12:848319..850029+

>mRNA_5249 ID=mRNA_5249|Name=jgi.p|Nanoce1779_2|591892|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at scaffold_12:848319..850029+ (Nannochloropsis oceanica)
ATGGCCAGACAGCCCATGGTGGCGAGGTTTGCGGCGATGGTAAGGCCAAA
AGAAGACGTTTGTGCAGCTGCCAGTGTTTCTCCTGCTGCTGTGGACGGGG
CCTCATCTCCCTCTTCGTCGCTCTCCGTTTCAATTCCAACCCCACCTGCA
TCTTCCTCACTGTCGCTGCTGTCGTCCCTCTTGTCCTTCATCAGCCTTCC
TCCGCCTGCTGGAAAGCTGGGCCATACGTGTTTCTTTTCTTCTGCGGTTG
TGGTAGTGACACAAATACCAGTGCTTCCGAAGGACAGCATCGGCTTTCCA
ATTCCCATCCCGAAGCCGCCCGACATTGCATCGACCTCGCCACCACTGCT
GCTGCTGCTACTGCTTCCGCCACCGCCAAAAAAAGATGGACGCGAGGCAG
CTCCAAAGCCAGTTTTACTCGTATTAAACCCACTCCCACTGGCGGCCGCG
GCCTTTGCGAACAGGTTGCTGTCACCTCCAATTCCACCAAAGGAAGACGA
GCCAAACCTACCATCACCACCGCCGGAAATCGCAAAGCTGGCAAATCCAC
CGCTCCTGCAGCCACTGTCACTACCGTTACTATTTGCGCTCGGTGTTGTC
ATCACATGCGTCTTCAGTTCTAGCGACGAGGAGGAAACTGAAGCTGGGCC
TGCGCTGCTGCCAAAGGGAGCTGGGGCTGGGGGAGGGGAAGCTTCCGCGT
CAAGCACCACAGCCGTCGACAATGGTTTACCCAAGGGTGGTGCTACAGTC
GCAGCCGGTGGCACAGGTGCTGCCGCTGGGGTGAATGATACTACCTTTTC
CTCCTGCAAAGTGGGAATCGCGCTATTTGTGAGGGGAGGGTGCTGA

Synonyms

Publications