jgi.p|Nanoce1779_2|591884, mRNA_5248 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591884
Unique Name	mRNA_5248
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1837
Alignment location	scaffold_12:844077..845913 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591970
Track	FilteredModels2
ProteinId	591884

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:844077..845913 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591884	gene_5248	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591884	mRNA_5248-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5248	CDS_5248	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:844077..845913-
coding sequence from alignment at scaffold_12:844077..845913-

mRNA sequence

>mRNA_5248 ID=mRNA_5248|Name=jgi.p|Nanoce1779_2|591884|organism=Nannochloropsis oceanica|type=mRNA|length=1837bp
GCGCGTCTGAGTGATGGAGGGGAGAGCATATCGCGGAGCACGGTAGGTGA
GTGGTATGTGTCGTTCATATTCGATGACGACGAAGAGGAGGAGGAGGAAG
AAGAAGAGGAGACGGAAGAAGAGAGCGAGGGGAGAGGGAAAGCACCTGAG
GGCGTGGGCAGTGCGCCGGAGGGGTGGGGTGCGTTGCAGGCCAAGCTGTC
GCAGGGGTGGAAGTGTGCATGTTGCTTCACGCAGAACAAGGAGAGCGATG
AGACTTGCGCGGCGTGCGAGGCAGGGCGGGACGGGAACGTAGCAAGCAAG
CCCAAGGCCGCGACTACAGGAGCAGCGACAGCGGGGTTGTCCGTGTTTGG
GGCCGTGCCTGGATCGACGAGCAGCGGGTTTTCGTTCAACGGTGGGAGCG
GTGGTGGCTTCTCCTTTGGGGGCGGCGGTCCGTCGCCGGCGGTTGCTACA
ACTCCTGTTGCATCGTCAGGCGGGTTCTCGTTTGTACCCAGCAGTAGTAG
CAGCAGCGGTAGTAATAGTGCGGGCTTGGCAGTGAGGCCTGTGTCTGCAG
GGAGCAGCAGCGGGGGCGTTGGCTTTTCTTTCCCGGGCTCAGTCCCGGCG
GCGGAGACGAGGGAAGGGAACGAAGAAAAGAAGGAGGTCGCTGTTTCCTC
TTCTGGTAGTGCGATAGCTTTTTTGCCGTGTAAGCCTGCGAGAGGACCGC
AGCCATTCCCTCCTACCCCGAAGACCGACACGACTAGCAGGCGTGGAGCA
CCGGTGGACAGCAGCATTCTAGGAGACAGGATGAGCAGCTGTGGGTTTCC
CAGCCTGGCGCCTTCCGACTCTATGGATTCAGTGGCGGCAGCAACGGCAA
CGGCAACGACGACTACCGTGAGCCCGGGGTTTATATCATCTCGCATCGCA
GACTCCCCCTTTATTTTGGCAGCGGCGTCTGCGGGGCCCTCGGGCAAGGG
GGTTTGGACTGGGGGTTCCTTTGGCAATTTCAAGCCAGCGAACGCATCAC
CTGTCTTTCCCTTCTTTCCGACGTCCTTAGCTCAGTCCCCGCCTCGCAAT
TTGACTGCTATGGGGGTTGGTGCTGATAAGGGGTCGCCCCCTCCCCCTGC
TTCGCCATCTGGATCCTCCTCTTCCTCCGCAGCAGCATCTGCCCCTTCAA
TTTCATTTCCTGCCACGCCCTCTCCGACGTCGACACCCAAAAAAACAGTC
AAAGATTTGGCCGCAGTATTTGATAGTGCCAAAAGCGGGAATAGTGCCAG
TGACAGCAGCGATAGCCAGGGTGAACTAGGGCGGCAGCTATTTTAACACC
GCCACAACGCAGAATGCCGACTTGATCCGTCGGCGGTTGAGCCTCGAGCG
AAGCGTGCTCCTAAGAACGAGTGGAGAGAGGGAAATAGAGAGTTATCGGG
CCGCGGGCGCCTGCGAGAAAAGTGTTCGAGTCGGATGCATGAGCCTAACT
TCTGGACGGAGAAGGCTCATGCGTTATGGACAAGACATCCTTTGCTCGAT
TGTGATCACAGGCGGCGAATGACGAATTAGAGCGTTCGTGAAAGCACACC
TTAGGAAGTGAACCACTTCAAAGATGACAGGAGAGGTCAAACAAGTTAGA
GCATATAGACTAGAGATAGGTAGTAAGCGCTGTGTCAACACAGTACGATA
GCTTAAAATGGTAGGACAACAATGTAAATGCGGATTGGAAAAAAAAAGTC
ACATTATGTCCAGTGACTTATATTTCAGAGACATGATGAATGAAAGAGGA
TGGAAGAATCAAAAGCAACGAAGGCACTGCTAGGACGACAAAGATGTTAC
ACACACATAAATCAAAAACCAAGCTGAACAAAAACAA

protein sequence of jgi.p|Nanoce1779_2|591884

>mRNA_5248-protein ID=mRNA_5248-protein|Name=jgi.p|Nanoce1779_2|591884|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MSSCGFPSLAPSDSMDSVAAATATATTTTVSPGFISSRIADSPFILAAAS
AGPSGKGVWTGGSFGNFKPANASPVFPFFPTSLAQSPPRNLTAMGVGADK
GSPPPPASPSGSSSSSAAASAPSISFPATPSPTSTPKKTVKDLAAVFDSA
KSGNSASDSSDSQGELGRQLF*

mRNA from alignment at scaffold_12:844077..845913-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5248 ID=mRNA_5248|Name=jgi.p|Nanoce1779_2|591884|organism=Nannochloropsis oceanica|type=mRNA|length=1837bp|location=Sequence derived from alignment at scaffold_12:844077..845913- (Nannochloropsis oceanica)
GCGCGTCTGAGTGATGGAGGGGAGAGCATATCGCGGAGCACGGTAGGTGA
GTGGTATGTGTCGTTCATATTCGATGACGACGAAGAGGAGGAGGAGGAAG
AAGAAGAGGAGACGGAAGAAGAGAGCGAGGGGAGAGGGAAAGCACCTGAG
GGCGTGGGCAGTGCGCCGGAGGGGTGGGGTGCGTTGCAGGCCAAGCTGTC
GCAGGGGTGGAAGTGTGCATGTTGCTTCACGCAGAACAAGGAGAGCGATG
AGACTTGCGCGGCGTGCGAGGCAGGGCGGGACGGGAACGTAGCAAGCAAG
CCCAAGGCCGCGACTACAGGAGCAGCGACAGCGGGGTTGTCCGTGTTTGG
GGCCGTGCCTGGATCGACGAGCAGCGGGTTTTCGTTCAACGGTGGGAGCG
GTGGTGGCTTCTCCTTTGGGGGCGGCGGTCCGTCGCCGGCGGTTGCTACA
ACTCCTGTTGCATCGTCAGGCGGGTTCTCGTTTGTACCCAGCAGTAGTAG
CAGCAGCGGTAGTAATAGTGCGGGCTTGGCAGTGAGGCCTGTGTCTGCAG
GGAGCAGCAGCGGGGGCGTTGGCTTTTCTTTCCCGGGCTCAGTCCCGGCG
GCGGAGACGAGGGAAGGGAACGAAGAAAAGAAGGAGGTCGCTGTTTCCTC
TTCTGGTAGTGCGATAGCTTTTTTGCCGTGTAAGCCTGCGAGAGGACCGC
AGCCATTCCCTCCTACCCCGAAGACCGACACGACTAGCAGGCGTGGAGCA
CCGGTGGACAGCAGCATTCTAGGAGACAGGATGAGCAGCTGTGGGTTTCC
CAGCCTGGCGCCTTCCGACTCTATGGATTCAGTGGCGGCAGCAACGGCAA
CGGCAACGACGACTACCGTGAGCCCGGGGTTTATATCATCTCGCATCGCA
GACTCCCCCTTTATTTTGGCAGCGGCGTCTGCGGGGCCCTCGGGCAAGGG
GGTTTGGACTGGGGGTTCCTTTGGCAATTTCAAGCCAGCGAACGCATCAC
CTGTCTTTCCCTTCTTTCCGACGTCCTTAGCTCAGTCCCCGCCTCGCAAT
TTGACTGCTATGGGGGTTGGTGCTGATAAGGGGTCGCCCCCTCCCCCTGC
TTCGCCATCTGGATCCTCCTCTTCCTCCGCAGCAGCATCTGCCCCTTCAA
TTTCATTTCCTGCCACGCCCTCTCCGACGTCGACACCCAAAAAAACAGTC
AAAGATTTGGCCGCAGTATTTGATAGTGCCAAAAGCGGGAATAGTGCCAG
TGACAGCAGCGATAGCCAGGGTGAACTAGGGCGGCAGCTATTTTAACACC
GCCACAACGCAGAATGCCGACTTGATCCGTCGGCGGTTGAGCCTCGAGCG
AAGCGTGCTCCTAAGAACGAGTGGAGAGAGGGAAATAGAGAGTTATCGGG
CCGCGGGCGCCTGCGAGAAAAGTGTTCGAGTCGGATGCATGAGCCTAACT
TCTGGACGGAGAAGGCTCATGCGTTATGGACAAGACATCCTTTGCTCGAT
TGTGATCACAGGCGGCGAATGACGAATTAGAGCGTTCGTGAAAGCACACC
TTAGGAAGTGAACCACTTCAAAGATGACAGGAGAGGTCAAACAAGTTAGA
GCATATAGACTAGAGATAGGTAGTAAGCGCTGTGTCAACACAGTACGATA
GCTTAAAATGGTAGGACAACAATGTAAATGCGGATTGGAAAAAAAAAGTC
ACATTATGTCCAGTGACTTATATTTCAGAGACATGATGAATGAAAGAGGA
TGGAAGAATCAAAAGCAACGAAGGCACTGCTAGGACGACAAAGATGTTAC
ACACACATAAATCAAAAACCAAGCTGAACAAAAACAA

Coding sequence (CDS) from alignment at scaffold_12:844077..845913-

>mRNA_5248 ID=mRNA_5248|Name=jgi.p|Nanoce1779_2|591884|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_12:844077..845913- (Nannochloropsis oceanica)
ATGAGCAGCTGTGGGTTTCCCAGCCTGGCGCCTTCCGACTCTATGGATTC
AGTGGCGGCAGCAACGGCAACGGCAACGACGACTACCGTGAGCCCGGGGT
TTATATCATCTCGCATCGCAGACTCCCCCTTTATTTTGGCAGCGGCGTCT
GCGGGGCCCTCGGGCAAGGGGGTTTGGACTGGGGGTTCCTTTGGCAATTT
CAAGCCAGCGAACGCATCACCTGTCTTTCCCTTCTTTCCGACGTCCTTAG
CTCAGTCCCCGCCTCGCAATTTGACTGCTATGGGGGTTGGTGCTGATAAG
GGGTCGCCCCCTCCCCCTGCTTCGCCATCTGGATCCTCCTCTTCCTCCGC
AGCAGCATCTGCCCCTTCAATTTCATTTCCTGCCACGCCCTCTCCGACGT
CGACACCCAAAAAAACAGTCAAAGATTTGGCCGCAGTATTTGATAGTGCC
AAAAGCGGGAATAGTGCCAGTGACAGCAGCGATAGCCAGGGTGAACTAGG
GCGGCAGCTATTTTAA

Synonyms

Publications