jgi.p|Nanoce1779_2|591869, mRNA_5245 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591869
Unique NamemRNA_5245
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1025
Alignment locationscaffold_12:826324..827348 -

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Properties
Property NameValue
TranscriptId591955
TrackFilteredModels2
ProteinId591869
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:826324..827348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591869gene_5245Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591869mRNA_5245-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5245CDS_5245Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5245 ID=mRNA_5245|Name=jgi.p|Nanoce1779_2|591869|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp
GGGCAAGGGGAAAAAGGGGAAGAAGGCGGGGCCGGTACTAGTGCCCAAGT
CGAAGCTTCGAGTCCTAAAGGCGCCCTTGGCCTCGCTCGTGCCTTTGATT
GCCAAGCCATTAGGGGGACAATCTTATCACCCTTCTGCCGAGGAACACCA
GGAGGCCTTGTCAGTGGCGGTGGCAGTGGAGGAGAAGAGGGACGCGGCGC
TGGCCAAGATGAAGGCGCCGCTTGCGGTCATGAGCGAAGCGACCAAGGCA
TTGCTATTGAGAGATTCTGAGGAGGAGGACGAAGGAGAGGAAGGACAAGA
TGAGGAAGAGGAAAAGGAGGGGGCGGAAGAGGAGAAAGGAGAAGTGTTGA
CGAAACGGATGTTGAGGCGGAAAGGGAAGATGACCAAGGCCGAGCGGAAT
AAGCAGCGGCGACGCAAGGCCATGGAACACCAAGCTGTATTGGACAAAGA
ACAAAATGCCCTGTCCCAGCAAGCATCCCGCGCTCGGGAGCACGCCAAGG
CCCTCCGTCGTGAGGACAAAGCGGTGAAGAAGGAGAAGAAGAAGGGCAGT
GGCAGCAGTCGAAACAGGCCATTTGCCCCTCTTGATCTCCCAACGGTCCC
TGTGCCGTTACCCCAAGACAAGGACCCTCTGCGCACTCGTTCTTTGGCCG
TCCCCTTGTCTGATGAGCTGAAGGGAAGCCTTCGCGCGCTGCGGACGAAG
GGTAGCTTGGCATCCGAGACATTGGAAGGGTTGCAGCGACGAGGGCAGTA
TGAGGTAGTACCGCAACGAAAGAGCGCCCGACCCAGACAGCGTGTTAAAT
ACGTGGAAAAGTTCCGCGGGGAGTAGGGGGAGGGAGATAAGTAGGGAAGA
AATGATGGATGCTTGAGTAGTATTGTTTTTTTGGGGGAAAAGAGGATTAA
ATGAGGAGGGGAAATCGAAGAGGAAGGTGAAAAAAAAGAAAAGTATGGAG
GAGGAGAAGCAGAAGGCCATAAAAATAAATATGAAGTGGATGATGATCAA
GAAGAAGAATACGAACAAGATCCTA
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protein sequence of jgi.p|Nanoce1779_2|591869

>mRNA_5245-protein ID=mRNA_5245-protein|Name=jgi.p|Nanoce1779_2|591869|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MKAPLAVMSEATKALLLRDSEEEDEGEEGQDEEEEKEGAEEEKGEVLTKR
MLRRKGKMTKAERNKQRRRKAMEHQAVLDKEQNALSQQASRAREHAKALR
REDKAVKKEKKKGSGSSRNRPFAPLDLPTVPVPLPQDKDPLRTRSLAVPL
SDELKGSLRALRTKGSLASETLEGLQRRGQYEVVPQRKSARPRQRVKYVE
KFRGE*
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mRNA from alignment at scaffold_12:826324..827348-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5245 ID=mRNA_5245|Name=jgi.p|Nanoce1779_2|591869|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp|location=Sequence derived from alignment at scaffold_12:826324..827348- (Nannochloropsis oceanica)
GGGCAAGGGGAAAAAGGGGAAGAAGGCGGGGCCGGTACTAGTGCCCAAGT
CGAAGCTTCGAGTCCTAAAGGCGCCCTTGGCCTCGCTCGTGCCTTTGATT
GCCAAGCCATTAGGGGGACAATCTTATCACCCTTCTGCCGAGGAACACCA
GGAGGCCTTGTCAGTGGCGGTGGCAGTGGAGGAGAAGAGGGACGCGGCGC
TGGCCAAGATGAAGGCGCCGCTTGCGGTCATGAGCGAAGCGACCAAGGCA
TTGCTATTGAGAGATTCTGAGGAGGAGGACGAAGGAGAGGAAGGACAAGA
TGAGGAAGAGGAAAAGGAGGGGGCGGAAGAGGAGAAAGGAGAAGTGTTGA
CGAAACGGATGTTGAGGCGGAAAGGGAAGATGACCAAGGCCGAGCGGAAT
AAGCAGCGGCGACGCAAGGCCATGGAACACCAAGCTGTATTGGACAAAGA
ACAAAATGCCCTGTCCCAGCAAGCATCCCGCGCTCGGGAGCACGCCAAGG
CCCTCCGTCGTGAGGACAAAGCGGTGAAGAAGGAGAAGAAGAAGGGCAGT
GGCAGCAGTCGAAACAGGCCATTTGCCCCTCTTGATCTCCCAACGGTCCC
TGTGCCGTTACCCCAAGACAAGGACCCTCTGCGCACTCGTTCTTTGGCCG
TCCCCTTGTCTGATGAGCTGAAGGGAAGCCTTCGCGCGCTGCGGACGAAG
GGTAGCTTGGCATCCGAGACATTGGAAGGGTTGCAGCGACGAGGGCAGTA
TGAGGTAGTACCGCAACGAAAGAGCGCCCGACCCAGACAGCGTGTTAAAT
ACGTGGAAAAGTTCCGCGGGGAGTAGGGGGAGGGAGATAAGTAGGGAAGA
AATGATGGATGCTTGAGTAGTATTGTTTTTTTGGGGGAAAAGAGGATTAA
ATGAGGAGGGGAAATCGAAGAGGAAGGTGAAAAAAAAGAAAAGTATGGAG
GAGGAGAAGCAGAAGGCCATAAAAATAAATATGAAGTGGATGATGATCAA
GAAGAAGAATACGAACAAGATCCTA
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Coding sequence (CDS) from alignment at scaffold_12:826324..827348-

>mRNA_5245 ID=mRNA_5245|Name=jgi.p|Nanoce1779_2|591869|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_12:826324..827348- (Nannochloropsis oceanica)
ATGAAGGCGCCGCTTGCGGTCATGAGCGAAGCGACCAAGGCATTGCTATT
GAGAGATTCTGAGGAGGAGGACGAAGGAGAGGAAGGACAAGATGAGGAAG
AGGAAAAGGAGGGGGCGGAAGAGGAGAAAGGAGAAGTGTTGACGAAACGG
ATGTTGAGGCGGAAAGGGAAGATGACCAAGGCCGAGCGGAATAAGCAGCG
GCGACGCAAGGCCATGGAACACCAAGCTGTATTGGACAAAGAACAAAATG
CCCTGTCCCAGCAAGCATCCCGCGCTCGGGAGCACGCCAAGGCCCTCCGT
CGTGAGGACAAAGCGGTGAAGAAGGAGAAGAAGAAGGGCAGTGGCAGCAG
TCGAAACAGGCCATTTGCCCCTCTTGATCTCCCAACGGTCCCTGTGCCGT
TACCCCAAGACAAGGACCCTCTGCGCACTCGTTCTTTGGCCGTCCCCTTG
TCTGATGAGCTGAAGGGAAGCCTTCGCGCGCTGCGGACGAAGGGTAGCTT
GGCATCCGAGACATTGGAAGGGTTGCAGCGACGAGGGCAGTATGAGGTAG
TACCGCAACGAAAGAGCGCCCGACCCAGACAGCGTGTTAAATACGTGGAA
AAGTTCCGCGGGGAGTAG
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Synonyms
Publications