Properties
| Property Name | Value |
|---|
| TranscriptId | 59850 |
| Track | FilteredModels2 |
| ProteinId | 59764 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:813659..816329 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5243 ID=mRNA_5243|Name=jgi.p|Nanoce1779_2|59764|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp
GGCAGGTGATGCATTTGAACCTAGACCCGGCGTTCTCTCACTCCTTTCCC
TCCCTCCCTCCCTCCCTCCTTCCCAGGCCTCCACTACGCCCTTTCCTCCC
AGGTCCTCCAGTCCTCCCTAACTGTGTCTGTGCAGGGATACAGCCACAAG
CTGCCCCTCCTGACCAAAACCATCCTCGAGGCCCTGTCGAGCTATAAGGG
CGAGGAGGAGGATGACGCCCTCTTTGCCCGCCTCTTGGATCGGCTCGTGA
AGGACTATGCCAACGACCTGCTGTCACAGCCGTATCAGCTGGCCATGGCT
GCCACCACGCACCTCCTTGTTTCTCCTTATGAAACCCGGGACAAGCTCGC
CGCAGCCCAATCACTCACCCCCTCCCTCCTTCGCGCCTTTATCCCCCGCT
TCCTCCGCGCCGTCCGGGTGGAAGCACTCGTCTACGGCAACGCCACGGAG
GCCCAAGCGCTCTCCCTCTTCGACTTGTCCCTAGTCGCCCTCCGTCGTCC
AGCCTCTCTCCCTCTCCCTCTGCTCGCGCGGATGGGCTGGAGGGTGGTGC
AGCTCTCGGCGGAGGAGGAGGTGGAGTATCGCACCGTGTGTGAGAATACA
GAGGAGCCGAATCATGGGTTGCAGGTTTCCTACCAGCTGGGACCTCAGTC
TGTGGCCCTCTCCGCCCACCTGGACCTGCTCGTCCTCCTCCTCAAGGACG
AGGCCTTTAATGAACTGCGCACCAAGCAGCAGCTCGGATACATTGTCTTC
TGCTCCGCCTCCGGGGCAAACCGACACATTCTCTCCCTCTCCTTCCTCGT
GCAGACCGTTAAAGACCCCGCAGTGGCCCTCGCCGCCATCGACGCCTTTC
TCACGTACAGTCGCACGTACCTGCTGGCCATGCCGGAGGAGGAATTTCAA
ACCAACGTGCAGGCTCTGGTGGATGCCAAGCTCGAGAAGGCCAAGAACTA
TTCCGAGCAAGGCAACCGATACTGGAATGAAGTCAGCAAAGGCTCCTACG
TCTTTGACCGCGCCCAGCGGGAGGCGGCCAAGGTGAAGACCCTCACAAAG
GAGGCGTTGGTGAGATTCCTGGATGACTGCGTGGGGAGGGGCGGCGAGGG
AGGGAAGGAGGGAGGGTGGGAGGGGGGGAGAAAGATGGTGGTGGTAGTGC
ATGGGTCGAGTCACCCTATTCCGTCGATGCCGGCGCAAGCGACAGCGGCA
GGAGGAGGGCTCTTGGGAGGTGCAATGGCCGCAGAGGGAGTGGGTGAGGG
GAAAGGCAATGGAGGGGACAAGACAAAGACGACGGAGGAGGAAATGAGGA
AGGTAAAGAAGCATATCTGGGTGACTGAACCGTCGGCGTTTAAGCGAGAG
CGGCCGCTGTACCCTTTGAGGCCGCAGGTGGCGGTTGAGGTGTTAGGTGT
GACGGAGCCGTGCTCAGCCATAGCGACAGAGTAGTCGAAGAAGGACGCGT
GGGGAAGGGGGGGGGGAGGGAAGAAAGAACAATGGGAATAAATCTGGAGA
AAGAAGAGGAGCGTGTGAAATGTCAGATTTAAAAATGGGTCGAGTAAGAT
CACAAATGGAAAAGAATCAGGCAGATAGCGTGAGAAGCAAAGAAGGAAAG
GAAGCAGGGAACTGGCGAAAATGACAGAAGGAGGTGCACGTGGTGAGGCT
GTGGGCGTGCGTGTCGGCTGGACTTACTTTGTCTCCTCTGATTGTGTTTG
GACACAGGAGACATACGGAAGGCCAGCAGCAGACGAGCCCCGCAACAACG
CGGGAGAATGCAATGCAGAGGGAACATCCCAAATCACGGGGT back to topprotein sequence of jgi.p|Nanoce1779_2|59764 >mRNA_5243-protein ID=mRNA_5243-protein|Name=jgi.p|Nanoce1779_2|59764|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MAATTHLLVSPYETRDKLAAAQSLTPSLLRAFIPRFLRAVRVEALVYGNA
TEAQALSLFDLSLVALRRPASLPLPLLARMGWRVVQLSAEEEVEYRTVCE
NTEEPNHGLQVSYQLGPQSVALSAHLDLLVLLLKDEAFNELRTKQQLGYI
VFCSASGANRHILSLSFLVQTVKDPAVALAAIDAFLTYSRTYLLAMPEEE
FQTNVQALVDAKLEKAKNYSEQGNRYWNEVSKGSYVFDRAQREAAKVKTL
TKEALVRFLDDCVGRGGEGGKEGGWEGGRKMVVVVHGSSHPIPSMPAQAT
AAGGGLLGGAMAAEGVGEGKGNGGDKTKTTEEEMRKVKKHIWVTEPSAFK
RERPLYPLRPQVAVEVLGVTEPCSAIATE* back to topmRNA from alignment at scaffold_12:813659..816329+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5243 ID=mRNA_5243|Name=jgi.p|Nanoce1779_2|59764|organism=Nannochloropsis oceanica|type=mRNA|length=2671bp|location=Sequence derived from alignment at scaffold_12:813659..816329+ (Nannochloropsis oceanica)
GGCAGGTGATGCATTTGAACCTAGACCCGGCGTTCTCTCACTCCTTTCCC
TCCCTCCCTCCCTCCCTCCTTCCCAGGCCTCCACTACGCCCTTTCCTCCC
AGGTCCTCCAGTCCTCCCTAACTGTGTCTGTGCAGGGATACAGCCACAAG
CTGCCCCTCCTGACCAAAACCATCCTCGAGGCCCTGTCGAGCTATAAGGG
CGAGGAGGAGGATGACGCCCTCTTTGCCCGCCTCTTGGATCGGCTCGTGA
AGGACTATGCCAACGACCTGCTGTCACAGCCGTATCAGGTGGGAGGGAGG
GAGGGAAAGAGGGAAAGGGGGGAAGAGGGATGGAGGGAAGAAGGAAAGTC
TACACCGCCGTTCACTGATTCCCTCTCCCCTTTTATCCTTTCCACCTTCG
CTTGCCCTCCCTCCCTCCCTTTTTCCCTCCCTTCCGTCCTCCCTTTTTGG
CAGCTGGCCATGGCTGCCACCACGCACCTCCTTGTTTCTCCTTATGAAAC
CCGGGACAAGCTCGCCGCAGCCCAATCACTCACCCCCTCCCTCCTTCGCG
CCTTTATCCCCCGCTTCCTCCGCGCCGTCCGGGTGGAAGCACTCGTCTAC
GGCAACGCCACGGAGGCCCAAGCGCTCTCCCTCTTCGACTTGTCCCTAGT
CGCCCTCCGTCGTCCAGCCTCTCTCCCTCTCCCTCTGCTCGCGCGGATGG
GCTGGAGGGTGGTGCAGCTCTCGGCGGAGGAGGAGGTGGAGTATCGCACC
GTGTGTGAGAATACAGAGGAGCCGAATCATGGGTTGCAGGTAGGGAGATA
GAGGGACGAAGGAACGATGGGAGGGAGGGAGGGAGGGAGGGCCGTGTAGC
TGTCTTTGAAGGAGGTGGTGAAGGAACAACGGGTTGAGAGGCTCGCCTTC
TGTTTGCACGGAAGGAGGGAGTGAAAGAGGGACGGGAAGGAGGGAAACTG
TCGATGTCTAGAAGTTTATTGGTTTTAAACATATGTCCTCTTCCCGCCAT
CCTCCGTCCGTCCCTCCCTCCCTCCTTCAAGGTTTCCTACCAGCTGGGAC
CTCAGTCTGTGGCCCTCTCCGCCCACCTGGACCTGCTCGTCCTCCTCCTC
AAGGACGAGGCCTTTAATGAACTGCGCACCAAGCAGCAGCTCGGATACAT
TGGTAAGGAGGGAGCGGGCAAGGGAGGCAGGGAAGGATGGAGGGCAGAGA
GGAGAGGAGTATTATGAGACTGTTGTAGAAATCATCTTGTGCCCCCATCA
CACTCACCCATCCTATTGACTGACCCCCCCCCTTTCCCTCCCTCCTTCCC
TCCCTTCTTCCCTCCTTGCTTTCCCCTCCTTCATAGTCTTCTGCTCCGCC
TCCGGGGCAAACCGACACATTCTCTCCCTCTCCTTCCTCGTGCAGACCGT
TAAAGACCCCGCAGTGGCCCTCGCCGCCATCGACGCCTTTCTCACGTACA
GTCGCACGTACCTGCTGGCCATGCCGGAGGAGGAATTTCAAACCAACGTG
CAGGCTCTGGTGGATGCCAAGCTCGAGAAGGCCAAGAACTATTCCGAGCA
AGGCAACCGGTACGCATAAATTACATTACATCTATGTCCAGATTACAGCA
CACCTACATCCACATTACTTTCTCCACGGGGAGAAACCCGTACAAGGCGA
AGGGCGACCTTTCGACTCTTGAAGACTTGGGCTGCACGGGGCACAATATG
ATGGGAACCTCCCTATTCCGTATCTCCTCCTCTTCTTTCTCTACCTCTTT
TCCTACACCCGCCACCAGCCTCCTCTCCCTCCCCCCTTGCGCTTTCTTTT
CCTTCCTCCCTCTCACCGGTTCCCTCCTGCCCACACGTTTCTCGCAGATA
CTGGAATGAAGTCAGCAAAGGCTCCTACGTCTTTGACCGCGCCCAGCGGG
AGGCGGCCAAGGTGAAGACCCTCACAAAGGAGGCGTTGGTGAGATTCCTG
GATGACTGCGTGGGGAGGGGCGGCGAGGGAGGGAAGGAGGGAGGGTGGGA
GGGGGGGAGAAAGATGGTGGTGGTAGTGCATGGGTCGAGTCACCCTATTC
CGTCGATGCCGGCGCAAGCGACAGCGGCAGGAGGAGGGCTCTTGGGAGGT
GCAATGGCCGCAGAGGGAGTGGGTGAGGGGAAAGGCAATGGAGGGGACAA
GACAAAGACGACGGAGGAGGAAATGAGGAAGGTAAAGAAGCATATCTGGG
TGACTGAACCGTCGGCGTTTAAGCGAGAGCGGCCGCTGTACCCTTTGAGG
CCGCAGGTGGCGGTTGAGGTGTTAGGTGTGACGGAGCCGTGCTCAGCCAT
AGCGACAGAGTAGTCGAAGAAGGACGCGTGGGGAAGGGGGGGGGGAGGGA
AGAAAGAACAATGGGAATAAATCTGGAGAAAGAAGAGGAGCGTGTGAAAT
GTCAGATTTAAAAATGGGTCGAGTAAGATCACAAATGGAAAAGAATCAGG
CAGATAGCGTGAGAAGCAAAGAAGGAAAGGAAGCAGGGAACTGGCGAAAA
TGACAGAAGGAGGTGCACGTGGTGAGGCTGTGGGCGTGCGTGTCGGCTGG
ACTTACTTTGTCTCCTCTGATTGTGTTTGGACACAGGAGACATACGGAAG
GCCAGCAGCAGACGAGCCCCGCAACAACGCGGGAGAATGCAATGCAGAGG
GAACATCCCAAATCACGGGGT back to topCoding sequence (CDS) from alignment at scaffold_12:813659..816329+ >mRNA_5243 ID=mRNA_5243|Name=jgi.p|Nanoce1779_2|59764|organism=Nannochloropsis oceanica|type=CDS|length=4560bp|location=Sequence derived from alignment at scaffold_12:813659..816329+ (Nannochloropsis oceanica)
ATGGCTGCCACCACGCACCTCCTTGTTTCTCCTTATGAAACCCGGGACAA
GCTCGCCGCAGCCCAATCACTCACCCCCTCCCTCCTTCGCGCCTTTATCC
CCCGCTTCCTCCGCGCCGTCCGGGTGGAAGCACTCGTCTACGGCAACGCC
ACGGAGGCCCAAGCGCTCTCCCTCTTCGACTTGTCCCTAGTCGCCCTCCG
TCGTCCAGCCTCTCTCCCTCTCCCTCTGCTCGCGCGGATGGGCTGGAGGG
TGGTGCAGCTCTCGGCGGAGGAGGAGGTGGAGTATCGCACCGTGTGTGAG
AATACAGAGGAGCCGAATCATGGGTTGCAGGTTTCCTACCAGCTGGGACC
TCAGTCTGTGGCCCTCTCCGCCCACCTGGACCTGCTCGTCCTCCTCCTCA
AGGACGAGGCCTTTAATGAACTGCGCACCAAGCAGCAGCTCGGATACATT
GTCTTCTGCTCCGCCTCCGGGGCAAACCGACACATTCTCTCCCTCTCCTT
CCTCGTGCAGACCGTTAAAGACCCCGCAGTGGCCCTCGCCGCCATCGACG
CCTTTCTCACGTACAGTCGCACGTACCTGCTGGCCATGCCGGAGGAGGAA
TTTCAAACCAACGTGCAGGCTCTGGTGGATGCCAAGCTCGAGAAGGCCAA
GAACTATTCCGAGCAAGGCAACCGATACTGGAATGAAGTCAGCAAAGGCT
CCTACGTCTTTGACCGCGCCCAGCGGGAGGCGGCCAAGGTGAAGACCCTC
ACAAAGGAGGCGTTGGTGAGATTCCTGGATGACTGCGTGGGGAGGGGCGG
CGAGGGAGGGAAGGAGGGAGGGTGGGAGGGGGGGAGAAAGATGGTGGTGG
TAGTGCATGGGTCGAGTCACCCTATTCCGTCGATGCCGGCGCAAGCGACA
GCGGCAGGAGGAGGGCTCTTGGGAGGTGCAATGGCCGCAGAGGGAGTGGG
TGAGGGGAAAGGCAATGGAGGGGACAAGACAAAGACGACGGAGGAGGAAA
TGAGGAAGGTAAAGAAGCATATCTGGGTGACTGAACCGTCGGCGTTTAAG
CGAGAGCGGCCGCTGTACCCTTTGAGGCCGCAGGTGGCGGTTGAGGTGTT
AGGTGTGACGGAGCCGTGCTCAGCCATAGCGACAGAGTAGATGGCTGCCA
CCACGCACCTCCTTGTTTCTCCTTATGAAACCCGGGACAAGCTCGCCGCA
GCCCAATCACTCACCCCCTCCCTCCTTCGCGCCTTTATCCCCCGCTTCCT
CCGCGCCGTCCGGGTGGAAGCACTCGTCTACGGCAACGCCACGGAGGCCC
AAGCGCTCTCCCTCTTCGACTTGTCCCTAGTCGCCCTCCGTCGTCCAGCC
TCTCTCCCTCTCCCTCTGCTCGCGCGGATGGGCTGGAGGGTGGTGCAGCT
CTCGGCGGAGGAGGAGGTGGAGTATCGCACCGTGTGTGAGAATACAGAGG
AGCCGAATCATGGGTTGCAGGTTTCCTACCAGCTGGGACCTCAGTCTGTG
GCCCTCTCCGCCCACCTGGACCTGCTCGTCCTCCTCCTCAAGGACGAGGC
CTTTAATGAACTGCGCACCAAGCAGCAGCTCGGATACATTGTCTTCTGCT
CCGCCTCCGGGGCAAACCGACACATTCTCTCCCTCTCCTTCCTCGTGCAG
ACCGTTAAAGACCCCGCAGTGGCCCTCGCCGCCATCGACGCCTTTCTCAC
GTACAGTCGCACGTACCTGCTGGCCATGCCGGAGGAGGAATTTCAAACCA
ACGTGCAGGCTCTGGTGGATGCCAAGCTCGAGAAGGCCAAGAACTATTCC
GAGCAAGGCAACCGATACTGGAATGAAGTCAGCAAAGGCTCCTACGTCTT
TGACCGCGCCCAGCGGGAGGCGGCCAAGGTGAAGACCCTCACAAAGGAGG
CGTTGGTGAGATTCCTGGATGACTGCGTGGGGAGGGGCGGCGAGGGAGGG
AAGGAGGGAGGGTGGGAGGGGGGGAGAAAGATGGTGGTGGTAGTGCATGG
GTCGAGTCACCCTATTCCGTCGATGCCGGCGCAAGCGACAGCGGCAGGAG
GAGGGCTCTTGGGAGGTGCAATGGCCGCAGAGGGAGTGGGTGAGGGGAAA
GGCAATGGAGGGGACAAGACAAAGACGACGGAGGAGGAAATGAGGAAGGT
AAAGAAGCATATCTGGGTGACTGAACCGTCGGCGTTTAAGCGAGAGCGGC
CGCTGTACCCTTTGAGGCCGCAGGTGGCGGTTGAGGTGTTAGGTGTGACG
GAGCCGTGCTCAGCCATAGCGACAGAGTAGATGGCTGCCACCACGCACCT
CCTTGTTTCTCCTTATGAAACCCGGGACAAGCTCGCCGCAGCCCAATCAC
TCACCCCCTCCCTCCTTCGCGCCTTTATCCCCCGCTTCCTCCGCGCCGTC
CGGGTGGAAGCACTCGTCTACGGCAACGCCACGGAGGCCCAAGCGCTCTC
CCTCTTCGACTTGTCCCTAGTCGCCCTCCGTCGTCCAGCCTCTCTCCCTC
TCCCTCTGCTCGCGCGGATGGGCTGGAGGGTGGTGCAGCTCTCGGCGGAG
GAGGAGGTGGAGTATCGCACCGTGTGTGAGAATACAGAGGAGCCGAATCA
TGGGTTGCAGGTTTCCTACCAGCTGGGACCTCAGTCTGTGGCCCTCTCCG
CCCACCTGGACCTGCTCGTCCTCCTCCTCAAGGACGAGGCCTTTAATGAA
CTGCGCACCAAGCAGCAGCTCGGATACATTGTCTTCTGCTCCGCCTCCGG
GGCAAACCGACACATTCTCTCCCTCTCCTTCCTCGTGCAGACCGTTAAAG
ACCCCGCAGTGGCCCTCGCCGCCATCGACGCCTTTCTCACGTACAGTCGC
ACGTACCTGCTGGCCATGCCGGAGGAGGAATTTCAAACCAACGTGCAGGC
TCTGGTGGATGCCAAGCTCGAGAAGGCCAAGAACTATTCCGAGCAAGGCA
ACCGATACTGGAATGAAGTCAGCAAAGGCTCCTACGTCTTTGACCGCGCC
CAGCGGGAGGCGGCCAAGGTGAAGACCCTCACAAAGGAGGCGTTGGTGAG
ATTCCTGGATGACTGCGTGGGGAGGGGCGGCGAGGGAGGGAAGGAGGGAG
GGTGGGAGGGGGGGAGAAAGATGGTGGTGGTAGTGCATGGGTCGAGTCAC
CCTATTCCGTCGATGCCGGCGCAAGCGACAGCGGCAGGAGGAGGGCTCTT
GGGAGGTGCAATGGCCGCAGAGGGAGTGGGTGAGGGGAAAGGCAATGGAG
GGGACAAGACAAAGACGACGGAGGAGGAAATGAGGAAGGTAAAGAAGCAT
ATCTGGGTGACTGAACCGTCGGCGTTTAAGCGAGAGCGGCCGCTGTACCC
TTTGAGGCCGCAGGTGGCGGTTGAGGTGTTAGGTGTGACGGAGCCGTGCT
CAGCCATAGCGACAGAGTAGATGGCTGCCACCACGCACCTCCTTGTTTCT
CCTTATGAAACCCGGGACAAGCTCGCCGCAGCCCAATCACTCACCCCCTC
CCTCCTTCGCGCCTTTATCCCCCGCTTCCTCCGCGCCGTCCGGGTGGAAG
CACTCGTCTACGGCAACGCCACGGAGGCCCAAGCGCTCTCCCTCTTCGAC
TTGTCCCTAGTCGCCCTCCGTCGTCCAGCCTCTCTCCCTCTCCCTCTGCT
CGCGCGGATGGGCTGGAGGGTGGTGCAGCTCTCGGCGGAGGAGGAGGTGG
AGTATCGCACCGTGTGTGAGAATACAGAGGAGCCGAATCATGGGTTGCAG
GTTTCCTACCAGCTGGGACCTCAGTCTGTGGCCCTCTCCGCCCACCTGGA
CCTGCTCGTCCTCCTCCTCAAGGACGAGGCCTTTAATGAACTGCGCACCA
AGCAGCAGCTCGGATACATTGTCTTCTGCTCCGCCTCCGGGGCAAACCGA
CACATTCTCTCCCTCTCCTTCCTCGTGCAGACCGTTAAAGACCCCGCAGT
GGCCCTCGCCGCCATCGACGCCTTTCTCACGTACAGTCGCACGTACCTGC
TGGCCATGCCGGAGGAGGAATTTCAAACCAACGTGCAGGCTCTGGTGGAT
GCCAAGCTCGAGAAGGCCAAGAACTATTCCGAGCAAGGCAACCGATACTG
GAATGAAGTCAGCAAAGGCTCCTACGTCTTTGACCGCGCCCAGCGGGAGG
CGGCCAAGGTGAAGACCCTCACAAAGGAGGCGTTGGTGAGATTCCTGGAT
GACTGCGTGGGGAGGGGCGGCGAGGGAGGGAAGGAGGGAGGGTGGGAGGG
GGGGAGAAAGATGGTGGTGGTAGTGCATGGGTCGAGTCACCCTATTCCGT
CGATGCCGGCGCAAGCGACAGCGGCAGGAGGAGGGCTCTTGGGAGGTGCA
ATGGCCGCAGAGGGAGTGGGTGAGGGGAAAGGCAATGGAGGGGACAAGAC
AAAGACGACGGAGGAGGAAATGAGGAAGGTAAAGAAGCATATCTGGGTGA
CTGAACCGTCGGCGTTTAAGCGAGAGCGGCCGCTGTACCCTTTGAGGCCG
CAGGTGGCGGTTGAGGTGTTAGGTGTGACGGAGCCGTGCTCAGCCATAGC
GACAGAGTAG back to top
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