jgi.p|Nanoce1779_2|591844, mRNA_5240 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591844
Unique NamemRNA_5240
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length676
Alignment locationscaffold_12:807855..808530 -

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Properties
Property NameValue
TranscriptId591930
TrackFilteredModels2
ProteinId591844
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:807855..808530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591844gene_5240Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591844mRNA_5240-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5240CDS_5240Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5240 ID=mRNA_5240|Name=jgi.p|Nanoce1779_2|591844|organism=Nannochloropsis oceanica|type=mRNA|length=676bp
TAGTGGCACAATGTCGTCTTTATTTTGTTTTTATCGCTCTAATATAAATT
AGTTCTCCCCACAGCGGATATGCGTTCATAATGATATTATTTTGTGTGCT
TTCGGTGCACCCCGTGCCACTTCCGCCCTCCCCCTCTCCCCCTTCTTCCA
ATCTATCCCCCTTCGTGCGTTTCTAATGAATCTAATTACACCAGCCAGAC
GGGTGTTGTTCAATGACTAAGTGCTTCTGTACACTACAGAAGTAGGCGAT
GAAGAAAGAGAGCATAATTCTAGTGCGGTCTCTCTTTCTCGTCCTCCCTC
TCTCTTCTCCGCTCCCCTTCTACAGCCTTCATTTATCCTTCCTCGCCCCC
TGTTACCCCCCACAGTCCACTCTGCTGTGTCCTTTCCCCTCTCTTTGCTT
ACAACGATATCCGTGTCCCCGTTCTGTTGTTCGCCCCTCTGCTGCTTCTA
TTGCCACCACTGTTGCTACAGTTGTCAGCGTTGTCGCTGCTGTTGCTGCT
GCTGCGGGTAGTGGTCGTCGTCGTGGTGATGGTGGTAGCAGGCTTGGGTA
GTTGTTGTGCTGGTGCTGGTGTAAGTGTCGCTGCTATTGTTGCTGCTGCT
GCTGCGGTTGCTGCTGACGTCGATGCCGGTGTGGTTTTTCCTTCCGCGAC
CGGCAACTCTGTGACGGAAGGACGAC
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protein sequence of jgi.p|Nanoce1779_2|591844

>mRNA_5240-protein ID=mRNA_5240-protein|Name=jgi.p|Nanoce1779_2|591844|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MKKESIILVRSLFLVLPLSSPLPFYSLHLSFLAPCYPPQSTLLCPFPSLC
LQRYPCPRSVVRPSAASIATTVATVVSVVAAVAAAAGSGRRRGDGGSRLG
*
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mRNA from alignment at scaffold_12:807855..808530-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5240 ID=mRNA_5240|Name=jgi.p|Nanoce1779_2|591844|organism=Nannochloropsis oceanica|type=mRNA|length=676bp|location=Sequence derived from alignment at scaffold_12:807855..808530- (Nannochloropsis oceanica)
TAGTGGCACAATGTCGTCTTTATTTTGTTTTTATCGCTCTAATATAAATT
AGTTCTCCCCACAGCGGATATGCGTTCATAATGATATTATTTTGTGTGCT
TTCGGTGCACCCCGTGCCACTTCCGCCCTCCCCCTCTCCCCCTTCTTCCA
ATCTATCCCCCTTCGTGCGTTTCTAATGAATCTAATTACACCAGCCAGAC
GGGTGTTGTTCAATGACTAAGTGCTTCTGTACACTACAGAAGTAGGCGAT
GAAGAAAGAGAGCATAATTCTAGTGCGGTCTCTCTTTCTCGTCCTCCCTC
TCTCTTCTCCGCTCCCCTTCTACAGCCTTCATTTATCCTTCCTCGCCCCC
TGTTACCCCCCACAGTCCACTCTGCTGTGTCCTTTCCCCTCTCTTTGCTT
ACAACGATATCCGTGTCCCCGTTCTGTTGTTCGCCCCTCTGCTGCTTCTA
TTGCCACCACTGTTGCTACAGTTGTCAGCGTTGTCGCTGCTGTTGCTGCT
GCTGCGGGTAGTGGTCGTCGTCGTGGTGATGGTGGTAGCAGGCTTGGGTA
GTTGTTGTGCTGGTGCTGGTGTAAGTGTCGCTGCTATTGTTGCTGCTGCT
GCTGCGGTTGCTGCTGACGTCGATGCCGGTGTGGTTTTTCCTTCCGCGAC
CGGCAACTCTGTGACGGAAGGACGAC
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Coding sequence (CDS) from alignment at scaffold_12:807855..808530-

>mRNA_5240 ID=mRNA_5240|Name=jgi.p|Nanoce1779_2|591844|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_12:807855..808530- (Nannochloropsis oceanica)
ATGAAGAAAGAGAGCATAATTCTAGTGCGGTCTCTCTTTCTCGTCCTCCC
TCTCTCTTCTCCGCTCCCCTTCTACAGCCTTCATTTATCCTTCCTCGCCC
CCTGTTACCCCCCACAGTCCACTCTGCTGTGTCCTTTCCCCTCTCTTTGC
TTACAACGATATCCGTGTCCCCGTTCTGTTGTTCGCCCCTCTGCTGCTTC
TATTGCCACCACTGTTGCTACAGTTGTCAGCGTTGTCGCTGCTGTTGCTG
CTGCTGCGGGTAGTGGTCGTCGTCGTGGTGATGGTGGTAGCAGGCTTGGG
TAG
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Synonyms
Publications