jgi.p|Nanoce1779_2|577575, mRNA_524 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577575
Unique NamemRNA_524
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length584
Alignment locationscaffold_3:1270062..1270645 +

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Properties
Property NameValue
TranscriptId577661
TrackFilteredModels2
ProteinId577575
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1270062..1270645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577575gene_524Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577575mRNA_524-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_524CDS_524Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_524 ID=mRNA_524|Name=jgi.p|Nanoce1779_2|577575|organism=Nannochloropsis oceanica|type=mRNA|length=584bp
CACATGTGTTTTTCTTCTTTCGTTTTATGCCTCTATCGATCCTACTCCTC
GTCGTCACCGACACTGTTCAGCTTCTCCCACCGCCTCTTTATGAGAGGTG
GGAGCGCGGCCACAGTCGCATTGTTGTCCAGCATGAACTTCTGGAGCTTC
GTCAATTGCTCTTTGTTCTTCCATTTCTCTTTTTCTCCTCCTACCCTCAT
TTTCCCATTCCTCTTCTTTTTCCTATCCTCCTCCTCCAATTCCTCTTTTT
TTTCTTTTACTCCTCCTCCCTCTCCTCTTTTTTTTTCCTATACTCCTTCT
CCCTTTCCTCTTTTCTCTTTCTCTCATATTTCTGGGACTTCTCTTGTGTC
TTTCTATCCTCCTCCCTTTCCAGCTCACTCGTCATTAAATTCAAAATGAC
ATCGAAGGGCTCGGCTTTCCTTTACCGTCATTTTTTCTCTCGATTCATCA
TCAACACATCCGTCATCGCCCTTTGTGTCTTCCCCGGATTATTCCGCTTA
TTTACGCGGCGCGAGTCGGCGCATGAGACACTCAACGATGACAGGGAGAA
GTCGGCGCTTGAGACACTCAACGATGACAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|577575

>mRNA_524-protein ID=mRNA_524-protein|Name=jgi.p|Nanoce1779_2|577575|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MCFSSFVLCLYRSYSSSSPTLFSFSHRLFMRGGSAATVALLSSMNFWSFV
NCSLFFHFSFSPPTLIFPFLFFFLSSSSNSSFFSFTPPPSPLFFSYTPSP
FPLFSFSHISGTSLVSFYPPPFPAHSSLNSK*
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mRNA from alignment at scaffold_3:1270062..1270645+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_524 ID=mRNA_524|Name=jgi.p|Nanoce1779_2|577575|organism=Nannochloropsis oceanica|type=mRNA|length=584bp|location=Sequence derived from alignment at scaffold_3:1270062..1270645+ (Nannochloropsis oceanica)
CACATGTGTTTTTCTTCTTTCGTTTTATGCCTCTATCGATCCTACTCCTC
GTCGTCACCGACACTGTTCAGCTTCTCCCACCGCCTCTTTATGAGAGGTG
GGAGCGCGGCCACAGTCGCATTGTTGTCCAGCATGAACTTCTGGAGCTTC
GTCAATTGCTCTTTGTTCTTCCATTTCTCTTTTTCTCCTCCTACCCTCAT
TTTCCCATTCCTCTTCTTTTTCCTATCCTCCTCCTCCAATTCCTCTTTTT
TTTCTTTTACTCCTCCTCCCTCTCCTCTTTTTTTTTCCTATACTCCTTCT
CCCTTTCCTCTTTTCTCTTTCTCTCATATTTCTGGGACTTCTCTTGTGTC
TTTCTATCCTCCTCCCTTTCCAGCTCACTCGTCATTAAATTCAAAATGAC
ATCGAAGGGCTCGGCTTTCCTTTACCGTCATTTTTTCTCTCGATTCATCA
TCAACACATCCGTCATCGCCCTTTGTGTCTTCCCCGGATTATTCCGCTTA
TTTACGCGGCGCGAGTCGGCGCATGAGACACTCAACGATGACAGGGAGAA
GTCGGCGCTTGAGACACTCAACGATGACAGGGAG
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Coding sequence (CDS) from alignment at scaffold_3:1270062..1270645+

>mRNA_524 ID=mRNA_524|Name=jgi.p|Nanoce1779_2|577575|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_3:1270062..1270645+ (Nannochloropsis oceanica)
ATGTGTTTTTCTTCTTTCGTTTTATGCCTCTATCGATCCTACTCCTCGTC
GTCACCGACACTGTTCAGCTTCTCCCACCGCCTCTTTATGAGAGGTGGGA
GCGCGGCCACAGTCGCATTGTTGTCCAGCATGAACTTCTGGAGCTTCGTC
AATTGCTCTTTGTTCTTCCATTTCTCTTTTTCTCCTCCTACCCTCATTTT
CCCATTCCTCTTCTTTTTCCTATCCTCCTCCTCCAATTCCTCTTTTTTTT
CTTTTACTCCTCCTCCCTCTCCTCTTTTTTTTTCCTATACTCCTTCTCCC
TTTCCTCTTTTCTCTTTCTCTCATATTTCTGGGACTTCTCTTGTGTCTTT
CTATCCTCCTCCCTTTCCAGCTCACTCGTCATTAAATTCAAAATGA
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Synonyms
Publications