jgi.p|Nanoce1779_2|591839, mRNA_5239 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591839
Unique Name	mRNA_5239
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1542
Alignment location	scaffold_12:801920..803461 -

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Properties


Property Name	Value
TranscriptId	591925
Track	FilteredModels2
ProteinId	591839

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:801920..803461 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591839	gene_5239	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591839	mRNA_5239-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5239	CDS_5239	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:801920..803461-
coding sequence from alignment at scaffold_12:801920..803461-

mRNA sequence

>mRNA_5239 ID=mRNA_5239|Name=jgi.p|Nanoce1779_2|591839|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp
GGTAAGAATAGGGAGGGCAAAATGAGGAGAGAGTTAGCAACGGGGGACGT
CCTCTAAAAGCTAAGGCACGGATGAGTCTCGAGTCTATTTTGTCTATTAC
ATTCGGAGCAGCGCTCGCTTTGCAATCGCATGGGTTCTGCCTTCATCCTC
CTCCTCGCCGACCTCCTCCACCTCCACGTAGCCTCTCCCTCCTCAACGAA
AGCAGACCCCAACAAGGCGAAGACGCCCGAGCCAAAGCACACCTACACCC
TACAATAAGATCCTTCAATGACAAGCTGCCCAGAAATCCTTATCATAAAA
GTCTAGCTTAATAAACCCTCCTCCCTCCCTCCACGTCTTGCTCCTCTGTT
TGCTCGTCTCATATCGACCGTTGCCTTGTCTAACAACATATAAGGAAGTT
GAGTCTGCAGAGATGGCGCTGTGGACGACGCTTGAAACAGATTCGACAGT
TTGTTTTTCCTAGAGACCGCGCTTTACTGTTCGTTCTTGGGCTGCGGGAA
GCGAGGCGCGCTTGCCATGCGGATACTCAATAGGCGAGCTGCCGAGGGGC
CACAACACGCGCGAAGATTGACTCGGGCGAATCAGGAGGTATAAGCCTCT
GAGAGGTCAGGGGGTCAGCTATTTTTGCCTAAAAACTCGCTTTAAGAGAG
AATTACCATTCACGCTAATAGTATCATCTATTTGTACACATTATACCCAC
ACTGTGCCTGGATGACAGGCCGCCATCTCATCTTCCTCATCATCAAATCT
AATGCTGCTCATTTCAGTGTTTCCTTCATAGTCGGAATTTCAGCAAATTC
ACAAGTCTCAACACCTACATAGTACCACGTCCACAGCAAAGACAAGACGG
TCAATGAAATATATGCTTATGGTGCGCTCGTCATGTGCTATCTTGTTTCT
TTTGATGCAAATTCCTGGTATATAACCTCCCGCCCAAAATCCGAACGAGT
CCCTGAGCACACGCACTTACCAATCCGGCCTAACCTCGCCACACGCATGC
CCAAATGCATACGTTCCTCTATTTTAGATATAGCACAGTTGCTTGGTGTA
TTTTACCCTTCAAGGCCCCGCAGCTTAAGCGCACACTAAGCCCATACACG
CCATCGGTTGAGGCTAACATGGGCTGCATCTCTGAAAAATAAGTCCCCAA
ACGGCATCGTGGGGCTTTCTGCTGAGTACCAACAGGCCTTTATTTTTCGT
TAACTCATATCATTTAAAAGGTCTAAATGGGGGGGGGCACTCGGCGGTCT
AGTGAGCGGATTCAAGCCTGTCGTCGGTCGGCCCATCCTACCTCTTGATA
CTGGCCATGACGGTTCCCGGAGGAGAAACAAAAGCATGTTTCGCTGGCTC
AGAAGTAAAGCGAAACTTCTCATCATCCCTCGCCCTCTTTCGAAATTTTA
TTTTGCATTTGAATTTCCTTTTTTACGCTTTCCTCACTCGCACTCTTCAT
CTCCGTCCTCCTCCTTCTCCCCCTCCTCCCCTAACTCCTCCACTCTGCAC
GTGCTGCAGCAGACTCTCGAGAGCAATAGGCGCATAGCCCAT

protein sequence of jgi.p|Nanoce1779_2|591839

>mRNA_5239-protein ID=mRNA_5239-protein|Name=jgi.p|Nanoce1779_2|591839|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MSLESILSITFGAALALQSHGFCLHPPPRRPPPPPRSLSLLNESRPQQGE
DARAKAHLHPTIRSFNDKLPRNPYHKSL

mRNA from alignment at scaffold_12:801920..803461-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5239 ID=mRNA_5239|Name=jgi.p|Nanoce1779_2|591839|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp|location=Sequence derived from alignment at scaffold_12:801920..803461- (Nannochloropsis oceanica)
GGTAAGAATAGGGAGGGCAAAATGAGGAGAGAGTTAGCAACGGGGGACGT
CCTCTAAAAGCTAAGGCACGGATGAGTCTCGAGTCTATTTTGTCTATTAC
ATTCGGAGCAGCGCTCGCTTTGCAATCGCATGGGTTCTGCCTTCATCCTC
CTCCTCGCCGACCTCCTCCACCTCCACGTAGCCTCTCCCTCCTCAACGAA
AGCAGACCCCAACAAGGCGAAGACGCCCGAGCCAAAGCACACCTACACCC
TACAATAAGATCCTTCAATGACAAGCTGCCCAGAAATCCTTATCATAAAA
GTCTAGCTTAATAAACCCTCCTCCCTCCCTCCACGTCTTGCTCCTCTGTT
TGCTCGTCTCATATCGACCGTTGCCTTGTCTAACAACATATAAGGAAGTT
GAGTCTGCAGAGATGGCGCTGTGGACGACGCTTGAAACAGATTCGACAGT
TTGTTTTTCCTAGAGACCGCGCTTTACTGTTCGTTCTTGGGCTGCGGGAA
GCGAGGCGCGCTTGCCATGCGGATACTCAATAGGCGAGCTGCCGAGGGGC
CACAACACGCGCGAAGATTGACTCGGGCGAATCAGGAGGTATAAGCCTCT
GAGAGGTCAGGGGGTCAGCTATTTTTGCCTAAAAACTCGCTTTAAGAGAG
AATTACCATTCACGCTAATAGTATCATCTATTTGTACACATTATACCCAC
ACTGTGCCTGGATGACAGGCCGCCATCTCATCTTCCTCATCATCAAATCT
AATGCTGCTCATTTCAGTGTTTCCTTCATAGTCGGAATTTCAGCAAATTC
ACAAGTCTCAACACCTACATAGTACCACGTCCACAGCAAAGACAAGACGG
TCAATGAAATATATGCTTATGGTGCGCTCGTCATGTGCTATCTTGTTTCT
TTTGATGCAAATTCCTGGTATATAACCTCCCGCCCAAAATCCGAACGAGT
CCCTGAGCACACGCACTTACCAATCCGGCCTAACCTCGCCACACGCATGC
CCAAATGCATACGTTCCTCTATTTTAGATATAGCACAGTTGCTTGGTGTA
TTTTACCCTTCAAGGCCCCGCAGCTTAAGCGCACACTAAGCCCATACACG
CCATCGGTTGAGGCTAACATGGGCTGCATCTCTGAAAAATAAGTCCCCAA
ACGGCATCGTGGGGCTTTCTGCTGAGTACCAACAGGCCTTTATTTTTCGT
TAACTCATATCATTTAAAAGGTCTAAATGGGGGGGGGCACTCGGCGGTCT
AGTGAGCGGATTCAAGCCTGTCGTCGGTCGGCCCATCCTACCTCTTGATA
CTGGCCATGACGGTTCCCGGAGGAGAAACAAAAGCATGTTTCGCTGGCTC
AGAAGTAAAGCGAAACTTCTCATCATCCCTCGCCCTCTTTCGAAATTTTA
TTTTGCATTTGAATTTCCTTTTTTACGCTTTCCTCACTCGCACTCTTCAT
CTCCGTCCTCCTCCTTCTCCCCCTCCTCCCCTAACTCCTCCACTCTGCAC
GTGCTGCAGCAGACTCTCGAGAGCAATAGGCGCATAGCCCAT

Coding sequence (CDS) from alignment at scaffold_12:801920..803461-

>mRNA_5239 ID=mRNA_5239|Name=jgi.p|Nanoce1779_2|591839|organism=Nannochloropsis oceanica|type=CDS|length=235bp|location=Sequence derived from alignment at scaffold_12:801920..803461- (Nannochloropsis oceanica)
ATGAGTCTCGAGTCTATTTTGTCTATTACATTCGGAGCAGCGCTCGCTTT
GCAATCGCATGGGTTCTGCCTTCATCCTCCTCCTCGCCGACCTCCTCCAC
CTCCACGTAGCCTCTCCCTCCTCAACGAAAGCAGACCCCAACAAGGCGAA
GACGCCCGAGCCAAAGCACACCTACACCCTACAATAAGATCCTTCAATGA
CAAGCTGCCCAGAAATCCTTATCATAAAAGTCTAG

Synonyms

Publications