jgi.p|Nanoce1779_2|591829, mRNA_5237 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591829
Unique NamemRNA_5237
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length833
Alignment locationscaffold_12:793805..794637 -

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Properties
Property NameValue
TranscriptId591915
TrackFilteredModels2
ProteinId591829
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:793805..794637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591829gene_5237Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591829mRNA_5237-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5237CDS_5237Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5237 ID=mRNA_5237|Name=jgi.p|Nanoce1779_2|591829|organism=Nannochloropsis oceanica|type=mRNA|length=833bp
ACAGACACGCAGAGCGGTCCGCGCAACGACGACCTGACGTGTATCGTCTC
GTCTTGATGTCCGTCTTGTCTTCTTGCAGTCTTTTCCTGCTCATCTCAAC
CCTCCTTGTCAGCAGCATGCGAGCCTTCGTGTACCGTGCTGGCCCGGCGA
CCTGGATGCGTCGCGCGGCCACCACTGCAGGCAAGATTACCACTGCGCAA
TTTAGCACGGCGTCTACCTCATCTACAGGCGCTAGTGTGGATGCCACCGC
GATACCGCCGCCTCCCAGGCCAACGATGGACGAGGCCCTGGCTACTTTTA
ATCGCGTCTTTCCTATCGGCACTGCCGGTGCGGACTTGCGGCCCGTCGTC
CTGTTTGACGGCGTTTGTATGTTCTGCAATCGGGGCATCGACACTCTGCT
AGCCCTAGATATCAACAGGAAGATCCGCGTGGCGCCTTTGCAGAGTGAGC
TGGGGCGATCGCTTATGACGGTGTGCGGCCGCGATCCTGATGACCTGTCG
TCGATGCTGGTGGTGGAGTCAGACAAGCGCCTTTCGGTCAAATCGGACGC
GGCCATTCGCATTGCCGAGGTGGCGGCACCACATCCTTTGTTGGGTGGGG
CGTTGGAGAAGGCAGCTAAAATGTTATTGCCGCAAACCATGCGCGATGGG
GCTTATGACCAAGTGGCGGAGAATCGGTACTCAATCATGGGCAAACGCGA
CGAGTGCCGTTTGCCGGATCCAGGAGATGATCGGTTTATCGCATGAGGGA
ATGTGTAAAGGTAAATGGACATGACATGACAGAAAGCTGAAAAAACATTT
TTTTGTTCGAACTGATGCAATAGTAAAACGCTG
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protein sequence of jgi.p|Nanoce1779_2|591829

>mRNA_5237-protein ID=mRNA_5237-protein|Name=jgi.p|Nanoce1779_2|591829|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MSVLSSCSLFLLISTLLVSSMRAFVYRAGPATWMRRAATTAGKITTAQFS
TASTSSTGASVDATAIPPPPRPTMDEALATFNRVFPIGTAGADLRPVVLF
DGVCMFCNRGIDTLLALDINRKIRVAPLQSELGRSLMTVCGRDPDDLSSM
LVVESDKRLSVKSDAAIRIAEVAAPHPLLGGALEKAAKMLLPQTMRDGAY
DQVAENRYSIMGKRDECRLPDPGDDRFIA*
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mRNA from alignment at scaffold_12:793805..794637-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5237 ID=mRNA_5237|Name=jgi.p|Nanoce1779_2|591829|organism=Nannochloropsis oceanica|type=mRNA|length=833bp|location=Sequence derived from alignment at scaffold_12:793805..794637- (Nannochloropsis oceanica)
ACAGACACGCAGAGCGGTCCGCGCAACGACGACCTGACGTGTATCGTCTC
GTCTTGATGTCCGTCTTGTCTTCTTGCAGTCTTTTCCTGCTCATCTCAAC
CCTCCTTGTCAGCAGCATGCGAGCCTTCGTGTACCGTGCTGGCCCGGCGA
CCTGGATGCGTCGCGCGGCCACCACTGCAGGCAAGATTACCACTGCGCAA
TTTAGCACGGCGTCTACCTCATCTACAGGCGCTAGTGTGGATGCCACCGC
GATACCGCCGCCTCCCAGGCCAACGATGGACGAGGCCCTGGCTACTTTTA
ATCGCGTCTTTCCTATCGGCACTGCCGGTGCGGACTTGCGGCCCGTCGTC
CTGTTTGACGGCGTTTGTATGTTCTGCAATCGGGGCATCGACACTCTGCT
AGCCCTAGATATCAACAGGAAGATCCGCGTGGCGCCTTTGCAGAGTGAGC
TGGGGCGATCGCTTATGACGGTGTGCGGCCGCGATCCTGATGACCTGTCG
TCGATGCTGGTGGTGGAGTCAGACAAGCGCCTTTCGGTCAAATCGGACGC
GGCCATTCGCATTGCCGAGGTGGCGGCACCACATCCTTTGTTGGGTGGGG
CGTTGGAGAAGGCAGCTAAAATGTTATTGCCGCAAACCATGCGCGATGGG
GCTTATGACCAAGTGGCGGAGAATCGGTACTCAATCATGGGCAAACGCGA
CGAGTGCCGTTTGCCGGATCCAGGAGATGATCGGTTTATCGCATGAGGGA
ATGTGTAAAGGTAAATGGACATGACATGACAGAAAGCTGAAAAAACATTT
TTTTGTTCGAACTGATGCAATAGTAAAACGCTG
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Coding sequence (CDS) from alignment at scaffold_12:793805..794637-

>mRNA_5237 ID=mRNA_5237|Name=jgi.p|Nanoce1779_2|591829|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_12:793805..794637- (Nannochloropsis oceanica)
ATGTCCGTCTTGTCTTCTTGCAGTCTTTTCCTGCTCATCTCAACCCTCCT
TGTCAGCAGCATGCGAGCCTTCGTGTACCGTGCTGGCCCGGCGACCTGGA
TGCGTCGCGCGGCCACCACTGCAGGCAAGATTACCACTGCGCAATTTAGC
ACGGCGTCTACCTCATCTACAGGCGCTAGTGTGGATGCCACCGCGATACC
GCCGCCTCCCAGGCCAACGATGGACGAGGCCCTGGCTACTTTTAATCGCG
TCTTTCCTATCGGCACTGCCGGTGCGGACTTGCGGCCCGTCGTCCTGTTT
GACGGCGTTTGTATGTTCTGCAATCGGGGCATCGACACTCTGCTAGCCCT
AGATATCAACAGGAAGATCCGCGTGGCGCCTTTGCAGAGTGAGCTGGGGC
GATCGCTTATGACGGTGTGCGGCCGCGATCCTGATGACCTGTCGTCGATG
CTGGTGGTGGAGTCAGACAAGCGCCTTTCGGTCAAATCGGACGCGGCCAT
TCGCATTGCCGAGGTGGCGGCACCACATCCTTTGTTGGGTGGGGCGTTGG
AGAAGGCAGCTAAAATGTTATTGCCGCAAACCATGCGCGATGGGGCTTAT
GACCAAGTGGCGGAGAATCGGTACTCAATCATGGGCAAACGCGACGAGTG
CCGTTTGCCGGATCCAGGAGATGATCGGTTTATCGCATGA
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Synonyms
Publications