jgi.p|Nanoce1779_2|591824, mRNA_5235 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591824
Unique NamemRNA_5235
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1693
Alignment locationscaffold_12:788830..790675 +

Link to JBrowse

Properties
Property NameValue
TranscriptId591910
TrackFilteredModels2
ProteinId591824
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:788830..790675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591824gene_5235Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591824mRNA_5235-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5235CDS_5235Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5235 ID=mRNA_5235|Name=jgi.p|Nanoce1779_2|591824|organism=Nannochloropsis oceanica|type=mRNA|length=1693bp
CAACAGGAGAAAGAAAGACACACCTAGTCTCTCCGTCGTGCTCAGCTCGC
GGCTTACATTTCCTTTTTCGGTCGCCTCTGGAAGTCAGGCCACCTCCCCA
CCCCCTCTTATTGCTAAGCCTCTACCCCGCCACCCCAAGTTACACATTCG
ACACGCCGAAGGATGGTGGGCTTGACCAAGCGCAAGGTTCAAGCGGGTAG
TCGAGATTCGGAAGGTGGCGGTCGCACGGAGAGGAGCCTGGGTCAATCCG
CGGAGGATCTCCAGAAAAAGCTTTACAAGCACTACAACGAGACGAGCTAC
CTAAACGCACAGTGGAGACACTCCCTCACCCGCGTCTCCCTCGCCCTGTC
AGCTATCTTGGTGTTTCGACTCTACAAATTAAGGGGCGAGGAGCTCACCA
AAACAGCACTCTCCTCCTCTTCCTACTTCACCTTCCTGCAAGCAAACCTT
GTCGAGGCCTTGGGCGTCCTTTCAGGCCTGCTCATTGCCCACTACATAAG
CAACCCCCTCCCCCTGACAGGAGGAACGTACGTCTTACCATGGTCCTTCT
ACGCCGCCCTCCTCCTGGCATTGTTGGAGGTCGGAGTATTCTACCAGTAC
GTGTCCTCCAACCCCGCTTACGTCTTGCACATCGACGCTACCTTGCCCGT
GGGTGCCTTGTTTTTCATCTTTGTGTGGGGGGCAGATCTGATGATGGGTC
GAAGTCAACGGCGCGCGAGACAAGGTCTCGAGGCCAGCCAGCGCCTGGGA
CAGACAGTGGCCCCGCGGCAGACTAAGGTCGAATAAGCGGAAGAAAGAAT
TCTTGGGGTGGAAAAGGAAAATGTGAATACAACAAATTAACCTAGCAATA
ACACCTGAAGCGATGGAGATGAAGCGGTACCTTGAGAGGGCAAACCGAGC
GACTCGCAAATAAACCCCTTCCTTGAACACGCATTGCTTGCTGTCGTTTT
TTGGCTCCCAAGTAGTTCTAGTATTTGAAAACGAGTTATTCTGTCTCTCA
CTCCGAGAAGAAATTACATAGCCCATCGAAGAACACCAAACCCGGCGGGA
TCCTTAAGCTACTCGCCTCAAAGTTGGAGCTTTTATATTCAAAACAAAAA
ATGCATTGTTGAACAGCACTTGAGCAGAAAATGGCAACGGCTCTACTTGG
GAAAATAACACGGAGAAGCACGGAATTTCTGGGGTTTTGGGTTATGGGGA
GGTTGGATTACGCGATGCATGTTATACATACATACATACATATATAATAT
ACATGTACATATATATTTATATAACATATATTGGAGCTGTACAGGTCCCC
GTATTATATAAGTGCAGAAGACCTGGGCGCCCTGCATATGTAGAATGATG
CACATCAGAGTTCATTACAGTACCGGCCTGCTTCGGCAGACATGCGCCGA
AGAGAGCACTCTATAGGAGCCTGTGGACTACGAAATCCAACCGCGTTGAT
CGTGTGCAACTCTACTTATTTGAACGCATCACGCGAATTCCCCTCCATAT
GGACGCATAGCTTATGTTCCAACGGCTCAGGCGAACGGACAGCCCGAGAG
CGCTCTGAAAACCTGACCTGTGCTTGGCTCTCCACCACCCAAGACTTTCT
ATATATATATATATATATATATCACACAAACACACGATCACAGCATCATG
CCGACCGACAAGAAGGAGGAAACTTTGGGGTTGCTAAAGACGT
back to top

protein sequence of jgi.p|Nanoce1779_2|591824

>mRNA_5235-protein ID=mRNA_5235-protein|Name=jgi.p|Nanoce1779_2|591824|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MVGLTKRKVQAGSRDSEGGGRTERSLGQSAEDLQKKLYKHYNETSYLNAQ
WRHSLTRVSLALSAILVFRLYKLRGEELTKTALSSSSYFTFLQANLVEAL
GVLSGLLIAHYISNPLPLTGGTYVLPWSFYAALLLALLEVGVFYQYVSSN
PAYVLHIDATLPVGALFFIFVWGADLMMGRSQRRARQGLEASQRLGQTVA
PRQTKVE*
back to top

mRNA from alignment at scaffold_12:788830..790675+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5235 ID=mRNA_5235|Name=jgi.p|Nanoce1779_2|591824|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp|location=Sequence derived from alignment at scaffold_12:788830..790675+ (Nannochloropsis oceanica)
CAACAGGAGAAAGAAAGACACACCTAGTCTCTCCGTCGTGCTCAGCTCGC
GGCTTACATTTCCTTTTTCGGTCGCCTCTGGAAGTCAGGCCACCTCCCCA
CCCCCTCTTATTGCTAAGCCTCTACCCCGCCACCCCAAGTTACACATTCG
ACACGCCGAAGGATGGTGGGCTTGACCAAGCGCAAGGTTCAAGCGGGTAG
TCGAGATTCGGAAGGTGGCGGTCGCACGGAGAGGAGCCTGGGTCAATCCG
CGGAGGATCTCCAGAAAAAGCTTTACAAGCACTACAACGAGACGAGCTAC
CTAAACGCACAGTGGAGAGTACGTACGCACTACATTCATAGCGTGGCAGC
CCGGCTAGCTAACCCTCTCCCTTGTGTAGTGAGCCTACTGTCATCATATT
TCATTTTCATGTCACCCATATCCCTGTCCTAACCGCACCACCCTTATCCC
TGCCTCACTCTCACGCCACAGCACTCCCTCACCCGCGTCTCCCTCGCCCT
GTCAGCTATCTTGGTGTTTCGACTCTACAAATTAAGGGGCGAGGAGCTCA
CCAAAACAGCACTCTCCTCCTCTTCCTACTTCACCTTCCTGCAAGCAAAC
CTTGTCGAGGCCTTGGGCGTCCTTTCAGGCCTGCTCATTGCCCACTACAT
AAGCAACCCCCTCCCCCTGACAGGAGGAACGTACGTCTTACCATGGTCCT
TCTACGCCGCCCTCCTCCTGGCATTGTTGGAGGTCGGAGTATTCTACCAG
TACGTGTCCTCCAACCCCGCTTACGTCTTGCACATCGACGCTACCTTGCC
CGTGGGTGCCTTGTTTTTCATCTTTGTGTGGGGGGCAGATCTGATGATGG
GTCGAAGTCAACGGCGCGCGAGACAAGGTCTCGAGGCCAGCCAGCGCCTG
GGACAGACAGTGGCCCCGCGGCAGACTAAGGTCGAATAAGCGGAAGAAAG
AATTCTTGGGGTGGAAAAGGAAAATGTGAATACAACAAATTAACCTAGCA
ATAACACCTGAAGCGATGGAGATGAAGCGGTACCTTGAGAGGGCAAACCG
AGCGACTCGCAAATAAACCCCTTCCTTGAACACGCATTGCTTGCTGTCGT
TTTTTGGCTCCCAAGTAGTTCTAGTATTTGAAAACGAGTTATTCTGTCTC
TCACTCCGAGAAGAAATTACATAGCCCATCGAAGAACACCAAACCCGGCG
GGATCCTTAAGCTACTCGCCTCAAAGTTGGAGCTTTTATATTCAAAACAA
AAAATGCATTGTTGAACAGCACTTGAGCAGAAAATGGCAACGGCTCTACT
TGGGAAAATAACACGGAGAAGCACGGAATTTCTGGGGTTTTGGGTTATGG
GGAGGTTGGATTACGCGATGCATGTTATACATACATACATACATATATAA
TATACATGTACATATATATTTATATAACATATATTGGAGCTGTACAGGTC
CCCGTATTATATAAGTGCAGAAGACCTGGGCGCCCTGCATATGTAGAATG
ATGCACATCAGAGTTCATTACAGTACCGGCCTGCTTCGGCAGACATGCGC
CGAAGAGAGCACTCTATAGGAGCCTGTGGACTACGAAATCCAACCGCGTT
GATCGTGTGCAACTCTACTTATTTGAACGCATCACGCGAATTCCCCTCCA
TATGGACGCATAGCTTATGTTCCAACGGCTCAGGCGAACGGACAGCCCGA
GAGCGCTCTGAAAACCTGACCTGTGCTTGGCTCTCCACCACCCAAGACTT
TCTATATATATATATATATATATATCACACAAACACACGATCACAGCATC
ATGCCGACCGACAAGAAGGAGGAAACTTTGGGGTTGCTAAAGACGT
back to top

Coding sequence (CDS) from alignment at scaffold_12:788830..790675+

>mRNA_5235 ID=mRNA_5235|Name=jgi.p|Nanoce1779_2|591824|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_12:788830..790675+ (Nannochloropsis oceanica)
ATGGTGGGCTTGACCAAGCGCAAGGTTCAAGCGGGTAGTCGAGATTCGGA
AGGTGGCGGTCGCACGGAGAGGAGCCTGGGTCAATCCGCGGAGGATCTCC
AGAAAAAGCTTTACAAGCACTACAACGAGACGAGCTACCTAAACGCACAG
TGGAGACACTCCCTCACCCGCGTCTCCCTCGCCCTGTCAGCTATCTTGGT
GTTTCGACTCTACAAATTAAGGGGCGAGGAGCTCACCAAAACAGCACTCT
CCTCCTCTTCCTACTTCACCTTCCTGCAAGCAAACCTTGTCGAGGCCTTG
GGCGTCCTTTCAGGCCTGCTCATTGCCCACTACATAAGCAACCCCCTCCC
CCTGACAGGAGGAACGTACGTCTTACCATGGTCCTTCTACGCCGCCCTCC
TCCTGGCATTGTTGGAGGTCGGAGTATTCTACCAGTACGTGTCCTCCAAC
CCCGCTTACGTCTTGCACATCGACGCTACCTTGCCCGTGGGTGCCTTGTT
TTTCATCTTTGTGTGGGGGGCAGATCTGATGATGGGTCGAAGTCAACGGC
GCGCGAGACAAGGTCTCGAGGCCAGCCAGCGCCTGGGACAGACAGTGGCC
CCGCGGCAGACTAAGGTCGAATAAATGGTGGGCTTGACCAAGCGCAAGGT
TCAAGCGGGTAGTCGAGATTCGGAAGGTGGCGGTCGCACGGAGAGGAGCC
TGGGTCAATCCGCGGAGGATCTCCAGAAAAAGCTTTACAAGCACTACAAC
GAGACGAGCTACCTAAACGCACAGTGGAGACACTCCCTCACCCGCGTCTC
CCTCGCCCTGTCAGCTATCTTGGTGTTTCGACTCTACAAATTAAGGGGCG
AGGAGCTCACCAAAACAGCACTCTCCTCCTCTTCCTACTTCACCTTCCTG
CAAGCAAACCTTGTCGAGGCCTTGGGCGTCCTTTCAGGCCTGCTCATTGC
CCACTACATAAGCAACCCCCTCCCCCTGACAGGAGGAACGTACGTCTTAC
CATGGTCCTTCTACGCCGCCCTCCTCCTGGCATTGTTGGAGGTCGGAGTA
TTCTACCAGTACGTGTCCTCCAACCCCGCTTACGTCTTGCACATCGACGC
TACCTTGCCCGTGGGTGCCTTGTTTTTCATCTTTGTGTGGGGGGCAGATC
TGATGATGGGTCGAAGTCAACGGCGCGCGAGACAAGGTCTCGAGGCCAGC
CAGCGCCTGGGACAGACAGTGGCCCCGCGGCAGACTAAGGTCGAATAA
back to top
Synonyms
Publications