jgi.p|Nanoce1779_2|630899, mRNA_5234 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630899
Unique Name	mRNA_5234
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2789
Alignment location	scaffold_12:785974..788762 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630985
Track	FilteredModels2
ProteinId	630899

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:785974..788762 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630899	gene_5234	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630899	mRNA_5234-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5234	CDS_5234	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:785974..788762-
coding sequence from alignment at scaffold_12:785974..788762-

mRNA sequence

>mRNA_5234 ID=mRNA_5234|Name=jgi.p|Nanoce1779_2|630899|organism=Nannochloropsis oceanica|type=mRNA|length=2789bp
ACCTCCTCATCAGCGTCATCGCCGTGGCGGTGCTTTTCTTGCGTCTCATA
AAGGTGTCCTCTCAAAACTGCATGACTCAACCACGACACTGACAGGAGGC
TGTCCTGCATACACGAGACGGAGGTAGCAAATAATGTCATTCTCTTTTGG
TGGCGCGGGCGCTGGTGGACCTGGCAAGAACCCCCCTTCAAGCTTTGGCT
TCGGGCAAGCGGCCGCTCCCCCTGCTTCGTCCGCCTTTGGCACCCCGGGC
GGGGCCACGACTACCCCTGGAGGCGGCTTTGGGGGTTTCGCAACGCCACC
CTCTTTTGGTAGCGGCAGCGGCAGCGGCACAACACCAGCGACCTCGACGG
GTGGTGGCCTTTTTGGCGGCACCAGCAGCAGCGGCGCAAGCTTTGGTACC
CCTGCACCCTCTGCCTTTGGAGCTCCTGCGCCCTCTGGGTTTGGGGCGCC
TGCTACAACAAGTGCAACAACCGGTATGCCTAGCAACCCATTCGCGGTCA
CACCCGCTCCGTCCACCACCACGGGGGGAGGGTTAGCGACCCCAAGTCCA
TTCGGGACTCCCGCAGCTCCTGCGCCCGCACCGAGCGGGGGTGACTTTCG
CTTCGGCGCAGCGACCACGGCAGGTACACCGGCGATAACAACCCCATCTG
CAAGTGGGTTTGGGTTCGGAGCTAAGCCGGCCGCCCCGGTGGCTCCAGCC
GCAGGAGGCGTTGGCTTTGGGGGTGCGTCGACCGCTGCTCCTGCGTATGG
TGCGCCTGTCCCTGTTACCACCACGACAACGACGACCCCGAGCACATCAG
CTGCTGGTGTCTTCAGCGGGTTCAGCTCGACGGCATCAACCCCTTCTGCA
TTGTCCAGCACCTTGCATAGCGCGACGGAGAAAGCCCCCGTGTCTCTTTT
TGGTGCGGCGCCTAGTAGTGGAGGCCTCTTCGGTAGTAGTTCTGCAGCCA
CCGCACCCGCTGCTCCCGCACCATCCACCTTATTTGGAGCACCATCAACA
CCAGTAACAACAGCATCAGCACCAGCACCAGCTCCTGCGCTCACTTCTGC
TTCCCTGTTTGGTGGGAGCACCGGACCAACTGCAACGACGACGACCACCA
AAACCCCTCAAGTCCCGCCAGCGTTCCCCTCCTTTGCTTCTACCTCGACA
TCCACATCCAACGTATCCGCACCTGCACCCGCGCCTGCATCTGGGTTTGG
CTTTGGTACTGCCCCTCCAGCCTCTGCCCCTGCTCTTGCTCCTGCTTCTT
TTGCTTCGCCCTTTGGCACCGGCAGTGCGACGACAACTACCACTCCAGCA
GCAGCAACAGCAGTATCAGCAGCTCCAGTGGCTGCTCCTTTTGGAGGATT
CAGCTTTGGTGGTGCTGCCACTCAAGCGCCAACGAGTGCAAGTGGAGCAA
CCAAGGAAGGAGGAGCAGGAGCAGCACCCTCCTCTAACGATGCTACCGCC
ACTATCTCAGCACCAGCACCAACACGAGGGTCGTCTTCTGGCTTCTCCTT
TGGAAATGGTGCTCCTCCCGCTCCTACTCCTGTAACTACTACTTCAGCAC
CAGCACCAACACCAGCGTCGTCTTCTGGCTTCTTCTTTGGAAACGGTGCT
CCTCCCACTCCTGCTCCTGTAGCTACAGCTGCTCCTCCTTCTGCACCTGC
TCCGGCCACCACCACAATGTCTACTGCAGCCCCCACCGCTTTTTCCTTCG
CTACACCCGCGACAAAACCTGCTGCTCCAACTGCTGCTTCTACTGCTGCC
ACGACCGCTGCTCCTGCGTCTGCCACCCCATCCTCCCTACCAACCTTGTC
TTCTGCCGCGCCAGCCGCCATCCCCCCTACAACAGCAGCAGGAGCACCGG
CATCAGCACCAGCACCAGGCCCCGCTCCTGCTCCTGCTCCTGCTCCTGCT
CCTGCATCAACCTCAACAGTCGCAGCCACACCGGTATCTGCGCCCTTTAG
CTTCGACAGTAGTAGCAGCGGTGGTAGTAGTGGTGGGGGGGTCTCCACAG
CTGCTGCTGATACTGCTAAAGCTACGGCTGCCCCTACAACAGCATCTGCT
CTCGCCACAACTACTACTACTACTGCCACTACGGGCAGTGCTGCTGTCAC
TGCTGCAACTGCTGCAGATTCCGAGTCGTCGGTTGTCGGTTTGGGTGGAA
GCACAGCCGGCGACCCTGCAGCATTCGAAAGAGAGTTCGGCACAACAAAA
TTGAGTGATTTGATAAAAATGTTTCAAGCAGGGGTCGAGGATGACCTAGA
AGTGTGTGAGATTCAAAACCAAGGTGTGAGGGAGGACGATGAGAACCTCT
TGCAGGTGTTAGGGCTAGCGCAAGCATTTCATGGGTCTGTGAATGAGTTG
ACGGAGGCCTGGGGGGACATCGACGGAGGGTTGAGGTATATTGAAGGGAA
GCAGGCTGCGATGGATATGGCGCTGGAGGAGTTAGAGAACGCAACGGTGA
CAAAGATGGATAGGGGAGATATAGTGCTCAATGAGGCAGATACGGAGCGG
ATCGCCCTCTATGATTTGGTTGAAGGGATGGATGAGGAGCTGAATGGTCT
GTTGAGACGGGTGTCAGGGACAGCGGAGAGCTTGCAGGACATTTATGAGC
AGCGTGTCGTGCCTGCAAACAAAGCTAATGCCATGGGCTTGTTCTTGCGA
CTGGCCAACGATCACCAACAGGCTTTGGAATGGTTGCAGCGGACGGGGCG
GAGGGTAGAGGAGGGGGTTGTTATAGTAGAGGGGAAGCTGAGGTGAGGTG
AGGAGGAATTAATTTTTATGTAAGGCAGATAGGCAATCT

protein sequence of jgi.p|Nanoce1779_2|630899

>mRNA_5234-protein ID=mRNA_5234-protein|Name=jgi.p|Nanoce1779_2|630899|organism=Nannochloropsis oceanica|type=polypeptide|length=871bp
MSFSFGGAGAGGPGKNPPSSFGFGQAAAPPASSAFGTPGGATTTPGGGFG
GFATPPSFGSGSGSGTTPATSTGGGLFGGTSSSGASFGTPAPSAFGAPAP
SGFGAPATTSATTGMPSNPFAVTPAPSTTTGGGLATPSPFGTPAAPAPAP
SGGDFRFGAATTAGTPAITTPSASGFGFGAKPAAPVAPAAGGVGFGGAST
AAPAYGAPVPVTTTTTTTPSTSAAGVFSGFSSTASTPSALSSTLHSATEK
APVSLFGAAPSSGGLFGSSSAATAPAAPAPSTLFGAPSTPVTTASAPAPA
PALTSASLFGGSTGPTATTTTTKTPQVPPAFPSFASTSTSTSNVSAPAPA
PASGFGFGTAPPASAPALAPASFASPFGTGSATTTTTPAAATAVSAAPVA
APFGGFSFGGAATQAPTSASGATKEGGAGAAPSSNDATATISAPAPTRGS
SSGFSFGNGAPPAPTPVTTTSAPAPTPASSSGFFFGNGAPPTPAPVATAA
PPSAPAPATTTMSTAAPTAFSFATPATKPAAPTAASTAATTAAPASATPS
SLPTLSSAAPAAIPPTTAAGAPASAPAPGPAPAPAPAPAPASTSTVAATP
VSAPFSFDSSSSGGSSGGGVSTAAADTAKATAAPTTASALATTTTTTATT
GSAAVTAATAADSESSVVGLGGSTAGDPAAFEREFGTTKLSDLIKMFQAG
VEDDLEVCEIQNQGVREDDENLLQVLGLAQAFHGSVNELTEAWGDIDGGL
RYIEGKQAAMDMALEELENATVTKMDRGDIVLNEADTERIALYDLVEGMD
EELNGLLRRVSGTAESLQDIYEQRVVPANKANAMGLFLRLANDHQQALEW
LQRTGRRVEEGVVIVEGKLR*

mRNA from alignment at scaffold_12:785974..788762-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5234 ID=mRNA_5234|Name=jgi.p|Nanoce1779_2|630899|organism=Nannochloropsis oceanica|type=mRNA|length=2789bp|location=Sequence derived from alignment at scaffold_12:785974..788762- (Nannochloropsis oceanica)
ACCTCCTCATCAGCGTCATCGCCGTGGCGGTGCTTTTCTTGCGTCTCATA
AAGGTGTCCTCTCAAAACTGCATGACTCAACCACGACACTGACAGGAGGC
TGTCCTGCATACACGAGACGGAGGTAGCAAATAATGTCATTCTCTTTTGG
TGGCGCGGGCGCTGGTGGACCTGGCAAGAACCCCCCTTCAAGCTTTGGCT
TCGGGCAAGCGGCCGCTCCCCCTGCTTCGTCCGCCTTTGGCACCCCGGGC
GGGGCCACGACTACCCCTGGAGGCGGCTTTGGGGGTTTCGCAACGCCACC
CTCTTTTGGTAGCGGCAGCGGCAGCGGCACAACACCAGCGACCTCGACGG
GTGGTGGCCTTTTTGGCGGCACCAGCAGCAGCGGCGCAAGCTTTGGTACC
CCTGCACCCTCTGCCTTTGGAGCTCCTGCGCCCTCTGGGTTTGGGGCGCC
TGCTACAACAAGTGCAACAACCGGTATGCCTAGCAACCCATTCGCGGTCA
CACCCGCTCCGTCCACCACCACGGGGGGAGGGTTAGCGACCCCAAGTCCA
TTCGGGACTCCCGCAGCTCCTGCGCCCGCACCGAGCGGGGGTGACTTTCG
CTTCGGCGCAGCGACCACGGCAGGTACACCGGCGATAACAACCCCATCTG
CAAGTGGGTTTGGGTTCGGAGCTAAGCCGGCCGCCCCGGTGGCTCCAGCC
GCAGGAGGCGTTGGCTTTGGGGGTGCGTCGACCGCTGCTCCTGCGTATGG
TGCGCCTGTCCCTGTTACCACCACGACAACGACGACCCCGAGCACATCAG
CTGCTGGTGTCTTCAGCGGGTTCAGCTCGACGGCATCAACCCCTTCTGCA
TTGTCCAGCACCTTGCATAGCGCGACGGAGAAAGCCCCCGTGTCTCTTTT
TGGTGCGGCGCCTAGTAGTGGAGGCCTCTTCGGTAGTAGTTCTGCAGCCA
CCGCACCCGCTGCTCCCGCACCATCCACCTTATTTGGAGCACCATCAACA
CCAGTAACAACAGCATCAGCACCAGCACCAGCTCCTGCGCTCACTTCTGC
TTCCCTGTTTGGTGGGAGCACCGGACCAACTGCAACGACGACGACCACCA
AAACCCCTCAAGTCCCGCCAGCGTTCCCCTCCTTTGCTTCTACCTCGACA
TCCACATCCAACGTATCCGCACCTGCACCCGCGCCTGCATCTGGGTTTGG
CTTTGGTACTGCCCCTCCAGCCTCTGCCCCTGCTCTTGCTCCTGCTTCTT
TTGCTTCGCCCTTTGGCACCGGCAGTGCGACGACAACTACCACTCCAGCA
GCAGCAACAGCAGTATCAGCAGCTCCAGTGGCTGCTCCTTTTGGAGGATT
CAGCTTTGGTGGTGCTGCCACTCAAGCGCCAACGAGTGCAAGTGGAGCAA
CCAAGGAAGGAGGAGCAGGAGCAGCACCCTCCTCTAACGATGCTACCGCC
ACTATCTCAGCACCAGCACCAACACGAGGGTCGTCTTCTGGCTTCTCCTT
TGGAAATGGTGCTCCTCCCGCTCCTACTCCTGTAACTACTACTTCAGCAC
CAGCACCAACACCAGCGTCGTCTTCTGGCTTCTTCTTTGGAAACGGTGCT
CCTCCCACTCCTGCTCCTGTAGCTACAGCTGCTCCTCCTTCTGCACCTGC
TCCGGCCACCACCACAATGTCTACTGCAGCCCCCACCGCTTTTTCCTTCG
CTACACCCGCGACAAAACCTGCTGCTCCAACTGCTGCTTCTACTGCTGCC
ACGACCGCTGCTCCTGCGTCTGCCACCCCATCCTCCCTACCAACCTTGTC
TTCTGCCGCGCCAGCCGCCATCCCCCCTACAACAGCAGCAGGAGCACCGG
CATCAGCACCAGCACCAGGCCCCGCTCCTGCTCCTGCTCCTGCTCCTGCT
CCTGCATCAACCTCAACAGTCGCAGCCACACCGGTATCTGCGCCCTTTAG
CTTCGACAGTAGTAGCAGCGGTGGTAGTAGTGGTGGGGGGGTCTCCACAG
CTGCTGCTGATACTGCTAAAGCTACGGCTGCCCCTACAACAGCATCTGCT
CTCGCCACAACTACTACTACTACTGCCACTACGGGCAGTGCTGCTGTCAC
TGCTGCAACTGCTGCAGATTCCGAGTCGTCGGTTGTCGGTTTGGGTGGAA
GCACAGCCGGCGACCCTGCAGCATTCGAAAGAGAGTTCGGCACAACAAAA
TTGAGTGATTTGATAAAAATGTTTCAAGCAGGGGTCGAGGATGACCTAGA
AGTGTGTGAGATTCAAAACCAAGGTGTGAGGGAGGACGATGAGAACCTCT
TGCAGGTGTTAGGGCTAGCGCAAGCATTTCATGGGTCTGTGAATGAGTTG
ACGGAGGCCTGGGGGGACATCGACGGAGGGTTGAGGTATATTGAAGGGAA
GCAGGCTGCGATGGATATGGCGCTGGAGGAGTTAGAGAACGCAACGGTGA
CAAAGATGGATAGGGGAGATATAGTGCTCAATGAGGCAGATACGGAGCGG
ATCGCCCTCTATGATTTGGTTGAAGGGATGGATGAGGAGCTGAATGGTCT
GTTGAGACGGGTGTCAGGGACAGCGGAGAGCTTGCAGGACATTTATGAGC
AGCGTGTCGTGCCTGCAAACAAAGCTAATGCCATGGGCTTGTTCTTGCGA
CTGGCCAACGATCACCAACAGGCTTTGGAATGGTTGCAGCGGACGGGGCG
GAGGGTAGAGGAGGGGGTTGTTATAGTAGAGGGGAAGCTGAGGTGAGGTG
AGGAGGAATTAATTTTTATGTAAGGCAGATAGGCAATCT

Coding sequence (CDS) from alignment at scaffold_12:785974..788762-

>mRNA_5234 ID=mRNA_5234|Name=jgi.p|Nanoce1779_2|630899|organism=Nannochloropsis oceanica|type=CDS|length=2613bp|location=Sequence derived from alignment at scaffold_12:785974..788762- (Nannochloropsis oceanica)
ATGTCATTCTCTTTTGGTGGCGCGGGCGCTGGTGGACCTGGCAAGAACCC
CCCTTCAAGCTTTGGCTTCGGGCAAGCGGCCGCTCCCCCTGCTTCGTCCG
CCTTTGGCACCCCGGGCGGGGCCACGACTACCCCTGGAGGCGGCTTTGGG
GGTTTCGCAACGCCACCCTCTTTTGGTAGCGGCAGCGGCAGCGGCACAAC
ACCAGCGACCTCGACGGGTGGTGGCCTTTTTGGCGGCACCAGCAGCAGCG
GCGCAAGCTTTGGTACCCCTGCACCCTCTGCCTTTGGAGCTCCTGCGCCC
TCTGGGTTTGGGGCGCCTGCTACAACAAGTGCAACAACCGGTATGCCTAG
CAACCCATTCGCGGTCACACCCGCTCCGTCCACCACCACGGGGGGAGGGT
TAGCGACCCCAAGTCCATTCGGGACTCCCGCAGCTCCTGCGCCCGCACCG
AGCGGGGGTGACTTTCGCTTCGGCGCAGCGACCACGGCAGGTACACCGGC
GATAACAACCCCATCTGCAAGTGGGTTTGGGTTCGGAGCTAAGCCGGCCG
CCCCGGTGGCTCCAGCCGCAGGAGGCGTTGGCTTTGGGGGTGCGTCGACC
GCTGCTCCTGCGTATGGTGCGCCTGTCCCTGTTACCACCACGACAACGAC
GACCCCGAGCACATCAGCTGCTGGTGTCTTCAGCGGGTTCAGCTCGACGG
CATCAACCCCTTCTGCATTGTCCAGCACCTTGCATAGCGCGACGGAGAAA
GCCCCCGTGTCTCTTTTTGGTGCGGCGCCTAGTAGTGGAGGCCTCTTCGG
TAGTAGTTCTGCAGCCACCGCACCCGCTGCTCCCGCACCATCCACCTTAT
TTGGAGCACCATCAACACCAGTAACAACAGCATCAGCACCAGCACCAGCT
CCTGCGCTCACTTCTGCTTCCCTGTTTGGTGGGAGCACCGGACCAACTGC
AACGACGACGACCACCAAAACCCCTCAAGTCCCGCCAGCGTTCCCCTCCT
TTGCTTCTACCTCGACATCCACATCCAACGTATCCGCACCTGCACCCGCG
CCTGCATCTGGGTTTGGCTTTGGTACTGCCCCTCCAGCCTCTGCCCCTGC
TCTTGCTCCTGCTTCTTTTGCTTCGCCCTTTGGCACCGGCAGTGCGACGA
CAACTACCACTCCAGCAGCAGCAACAGCAGTATCAGCAGCTCCAGTGGCT
GCTCCTTTTGGAGGATTCAGCTTTGGTGGTGCTGCCACTCAAGCGCCAAC
GAGTGCAAGTGGAGCAACCAAGGAAGGAGGAGCAGGAGCAGCACCCTCCT
CTAACGATGCTACCGCCACTATCTCAGCACCAGCACCAACACGAGGGTCG
TCTTCTGGCTTCTCCTTTGGAAATGGTGCTCCTCCCGCTCCTACTCCTGT
AACTACTACTTCAGCACCAGCACCAACACCAGCGTCGTCTTCTGGCTTCT
TCTTTGGAAACGGTGCTCCTCCCACTCCTGCTCCTGTAGCTACAGCTGCT
CCTCCTTCTGCACCTGCTCCGGCCACCACCACAATGTCTACTGCAGCCCC
CACCGCTTTTTCCTTCGCTACACCCGCGACAAAACCTGCTGCTCCAACTG
CTGCTTCTACTGCTGCCACGACCGCTGCTCCTGCGTCTGCCACCCCATCC
TCCCTACCAACCTTGTCTTCTGCCGCGCCAGCCGCCATCCCCCCTACAAC
AGCAGCAGGAGCACCGGCATCAGCACCAGCACCAGGCCCCGCTCCTGCTC
CTGCTCCTGCTCCTGCTCCTGCATCAACCTCAACAGTCGCAGCCACACCG
GTATCTGCGCCCTTTAGCTTCGACAGTAGTAGCAGCGGTGGTAGTAGTGG
TGGGGGGGTCTCCACAGCTGCTGCTGATACTGCTAAAGCTACGGCTGCCC
CTACAACAGCATCTGCTCTCGCCACAACTACTACTACTACTGCCACTACG
GGCAGTGCTGCTGTCACTGCTGCAACTGCTGCAGATTCCGAGTCGTCGGT
TGTCGGTTTGGGTGGAAGCACAGCCGGCGACCCTGCAGCATTCGAAAGAG
AGTTCGGCACAACAAAATTGAGTGATTTGATAAAAATGTTTCAAGCAGGG
GTCGAGGATGACCTAGAAGTGTGTGAGATTCAAAACCAAGGTGTGAGGGA
GGACGATGAGAACCTCTTGCAGGTGTTAGGGCTAGCGCAAGCATTTCATG
GGTCTGTGAATGAGTTGACGGAGGCCTGGGGGGACATCGACGGAGGGTTG
AGGTATATTGAAGGGAAGCAGGCTGCGATGGATATGGCGCTGGAGGAGTT
AGAGAACGCAACGGTGACAAAGATGGATAGGGGAGATATAGTGCTCAATG
AGGCAGATACGGAGCGGATCGCCCTCTATGATTTGGTTGAAGGGATGGAT
GAGGAGCTGAATGGTCTGTTGAGACGGGTGTCAGGGACAGCGGAGAGCTT
GCAGGACATTTATGAGCAGCGTGTCGTGCCTGCAAACAAAGCTAATGCCA
TGGGCTTGTTCTTGCGACTGGCCAACGATCACCAACAGGCTTTGGAATGG
TTGCAGCGGACGGGGCGGAGGGTAGAGGAGGGGGTTGTTATAGTAGAGGG
GAAGCTGAGGTGA

Synonyms

Publications