jgi.p|Nanoce1779_2|591818, mRNA_5233 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591818
Unique NamemRNA_5233
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1155
Alignment locationscaffold_12:784518..785672 +

Link to JBrowse

Properties
Property NameValue
TranscriptId591904
TrackFilteredModels2
ProteinId591818
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:784518..785672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591818gene_5233Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591818mRNA_5233-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5233CDS_5233Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5233 ID=mRNA_5233|Name=jgi.p|Nanoce1779_2|591818|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp
ACAGCTCGTCACCAAAATCATGGGCAACGTGTTTCCTCCTTCTCCCAACG
GCGACGGCATCCAGCGCCCGCAAGCCCCTGCAACACCACGAACCCCGGCA
GTTGCTGCCCGGTGGCGGCCGCATCATCCCCAGTCCGGCTGTGAGAAAAT
TTTTTGCAATGGCTTTTGCGAGGATAACTGTCGCTTCTCTGTTTCGAGGT
TGGCATCTGCCTCCTACCTTTCTAGACGGGACAGGAGGAGTGGGGAGGTT
GATGAGATGGACGAGGAAGAAAAAGAGGGCAGAGAGACATCGACACCCGT
ATCTAGATGGTGGCAACAGAAGCGACAAAGGGAGGAGCAACAGGAGGTTT
TGGAAGAAGAGGAAGGTGAAGAGATCGGGAAAGGTGTGGAGGCAACGAGA
CGACACCACCGGCACTTAACCAAGCGGCATAGAATAATTCTGACTAGCGT
GGCCTTGGACCGGGCGCAAATGGAGCAGGAGGCAAGACGAATACAGTACC
CACGGATAGGATTGGGGAAAGGCGATGGGGAAAGTATCATTTCTCAAACA
GTGAAGGAGAAAGGGGAAGAGGGGGACGAGGAAGAGGACGAGAAAGAAGA
GGAGGAGGAGCAAGCGCAGCAGCAGCAGCAGCAGCAGGGAGGAGAAGAAC
ACAAAGTGGTGGAAAAAAATAGCGGACAAAAGCGAGGAAACCGACTTGTA
GAGGGCGAGAAAGTACATGAAGAAGAAGGAAAAGATGAGGAAGGAAAAGA
TGAGGAAGGAGGAGAGGAGGATGGAGGGGGTCCTCAGATGAAGAAGGCAG
AGGCCGAGTTTGGAACGAGAAAGAGCGAGATGAAGAGTATGCGTATGACG
GGGGATAGAGAGGAAGAAGAAGAGGTGGAGGAGGAAGAGGAGGATGAGAA
TAAATACGTGAAAGTTTCTTCAGGCGGAATGGTTCAAACGGAGGAAGAAA
AGAAAAAGCCCAGAGGGGATGGGGAGGAGGAGGAGGAGAGAGAGGACGAA
GAGGAGGGGGATAAGGAGAAGGAGGAGGAGGATTAGGCAGAGGAGGACAA
AGAAGAAGGGAAAGAGAAGGAAGAGAAAGAGGAGGAAGAGGAAGAAGAGG
AAGGTAAGGTTGGAGGAGGAGGAGTGAAAGGAGGGGAGGAGAGTATGAAG
TCGCA
back to top

protein sequence of jgi.p|Nanoce1779_2|591818

>mRNA_5233-protein ID=mRNA_5233-protein|Name=jgi.p|Nanoce1779_2|591818|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MGNVFPPSPNGDGIQRPQAPATPRTPAVAARWRPHHPQSGCEKIFCNGFC
EDNCRFSVSRLASASYLSRRDRRSGEVDEMDEEEKEGRETSTPVSRWWQQ
KRQREEQQEVLEEEEGEEIGKGVEATRRHHRHLTKRHRIILTSVALDRAQ
MEQEARRIQYPRIGLGKGDGESIISQTVKEKGEEGDEEEDEKEEEEEQAQ
QQQQQQGGEEHKVVEKNSGQKRGNRLVEGEKVHEEEGKDEEGKDEEGGEE
DGGGPQMKKAEAEFGTRKSEMKSMRMTGDREEEEEVEEEEEDENKYVKVS
SGGMVQTEEEKKKPRGDGEEEEEREDEEEGDKEKEEED*
back to top

mRNA from alignment at scaffold_12:784518..785672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5233 ID=mRNA_5233|Name=jgi.p|Nanoce1779_2|591818|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp|location=Sequence derived from alignment at scaffold_12:784518..785672+ (Nannochloropsis oceanica)
ACAGCTCGTCACCAAAATCATGGGCAACGTGTTTCCTCCTTCTCCCAACG
GCGACGGCATCCAGCGCCCGCAAGCCCCTGCAACACCACGAACCCCGGCA
GTTGCTGCCCGGTGGCGGCCGCATCATCCCCAGTCCGGCTGTGAGAAAAT
TTTTTGCAATGGCTTTTGCGAGGATAACTGTCGCTTCTCTGTTTCGAGGT
TGGCATCTGCCTCCTACCTTTCTAGACGGGACAGGAGGAGTGGGGAGGTT
GATGAGATGGACGAGGAAGAAAAAGAGGGCAGAGAGACATCGACACCCGT
ATCTAGATGGTGGCAACAGAAGCGACAAAGGGAGGAGCAACAGGAGGTTT
TGGAAGAAGAGGAAGGTGAAGAGATCGGGAAAGGTGTGGAGGCAACGAGA
CGACACCACCGGCACTTAACCAAGCGGCATAGAATAATTCTGACTAGCGT
GGCCTTGGACCGGGCGCAAATGGAGCAGGAGGCAAGACGAATACAGTACC
CACGGATAGGATTGGGGAAAGGCGATGGGGAAAGTATCATTTCTCAAACA
GTGAAGGAGAAAGGGGAAGAGGGGGACGAGGAAGAGGACGAGAAAGAAGA
GGAGGAGGAGCAAGCGCAGCAGCAGCAGCAGCAGCAGGGAGGAGAAGAAC
ACAAAGTGGTGGAAAAAAATAGCGGACAAAAGCGAGGAAACCGACTTGTA
GAGGGCGAGAAAGTACATGAAGAAGAAGGAAAAGATGAGGAAGGAAAAGA
TGAGGAAGGAGGAGAGGAGGATGGAGGGGGTCCTCAGATGAAGAAGGCAG
AGGCCGAGTTTGGAACGAGAAAGAGCGAGATGAAGAGTATGCGTATGACG
GGGGATAGAGAGGAAGAAGAAGAGGTGGAGGAGGAAGAGGAGGATGAGAA
TAAATACGTGAAAGTTTCTTCAGGCGGAATGGTTCAAACGGAGGAAGAAA
AGAAAAAGCCCAGAGGGGATGGGGAGGAGGAGGAGGAGAGAGAGGACGAA
GAGGAGGGGGATAAGGAGAAGGAGGAGGAGGATTAGGCAGAGGAGGACAA
AGAAGAAGGGAAAGAGAAGGAAGAGAAAGAGGAGGAAGAGGAAGAAGAGG
AAGGTAAGGTTGGAGGAGGAGGAGTGAAAGGAGGGGAGGAGAGTATGAAG
TCGCA
back to top

Coding sequence (CDS) from alignment at scaffold_12:784518..785672+

>mRNA_5233 ID=mRNA_5233|Name=jgi.p|Nanoce1779_2|591818|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at scaffold_12:784518..785672+ (Nannochloropsis oceanica)
ATGGGCAACGTGTTTCCTCCTTCTCCCAACGGCGACGGCATCCAGCGCCC
GCAAGCCCCTGCAACACCACGAACCCCGGCAGTTGCTGCCCGGTGGCGGC
CGCATCATCCCCAGTCCGGCTGTGAGAAAATTTTTTGCAATGGCTTTTGC
GAGGATAACTGTCGCTTCTCTGTTTCGAGGTTGGCATCTGCCTCCTACCT
TTCTAGACGGGACAGGAGGAGTGGGGAGGTTGATGAGATGGACGAGGAAG
AAAAAGAGGGCAGAGAGACATCGACACCCGTATCTAGATGGTGGCAACAG
AAGCGACAAAGGGAGGAGCAACAGGAGGTTTTGGAAGAAGAGGAAGGTGA
AGAGATCGGGAAAGGTGTGGAGGCAACGAGACGACACCACCGGCACTTAA
CCAAGCGGCATAGAATAATTCTGACTAGCGTGGCCTTGGACCGGGCGCAA
ATGGAGCAGGAGGCAAGACGAATACAGTACCCACGGATAGGATTGGGGAA
AGGCGATGGGGAAAGTATCATTTCTCAAACAGTGAAGGAGAAAGGGGAAG
AGGGGGACGAGGAAGAGGACGAGAAAGAAGAGGAGGAGGAGCAAGCGCAG
CAGCAGCAGCAGCAGCAGGGAGGAGAAGAACACAAAGTGGTGGAAAAAAA
TAGCGGACAAAAGCGAGGAAACCGACTTGTAGAGGGCGAGAAAGTACATG
AAGAAGAAGGAAAAGATGAGGAAGGAAAAGATGAGGAAGGAGGAGAGGAG
GATGGAGGGGGTCCTCAGATGAAGAAGGCAGAGGCCGAGTTTGGAACGAG
AAAGAGCGAGATGAAGAGTATGCGTATGACGGGGGATAGAGAGGAAGAAG
AAGAGGTGGAGGAGGAAGAGGAGGATGAGAATAAATACGTGAAAGTTTCT
TCAGGCGGAATGGTTCAAACGGAGGAAGAAAAGAAAAAGCCCAGAGGGGA
TGGGGAGGAGGAGGAGGAGAGAGAGGACGAAGAGGAGGGGGATAAGGAGA
AGGAGGAGGAGGATTAG
back to top
Synonyms
Publications