jgi.p|Nanoce1779_2|591815, mRNA_5232 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591815
Unique NamemRNA_5232
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length712
Alignment locationscaffold_12:783039..784109 -

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Properties
Property NameValue
TranscriptId591901
TrackFilteredModels2
ProteinId591815
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:783039..784109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591815gene_5232Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591815mRNA_5232-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5232CDS_5232Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5232 ID=mRNA_5232|Name=jgi.p|Nanoce1779_2|591815|organism=Nannochloropsis oceanica|type=mRNA|length=712bp
ACAGCATTTGACTTCTGTTTCGTCAGTACGAAACCTTCAAGAGGACTCCT
TGCTTGTAAAGCAGGCCCGCTCACTTCCACCTTTTTCGTCTTCCTCCACG
CCGCACAACATCTGCATCAAGCACGCCATGAGTTCTGGTGCAGGTGGTGC
GGTACAACAACCCTACATCCCCACCGATGCCGAGCAAGCAGAGCACTTGC
AGAATCTGATCCGGAAACTCAAGGAATTTTGGGTGGAGCAACTGGCGGAG
ATGGAAAGCTTGAGTCTGGCCACGGAACAGGACTTCAAAAACTACATCGA
CCTCCCTCTGGCCCGAATCAAGCGCATCATGAAAAGTGATGAAGATGTGC
ACATGATCAGTGCGGAGGTCCTGGTTTTGTTCGCCAAGGCCTGCGAGATG
TTTATTTTGGAGCTGACCATCCGCGCGTGGTGCTACAGCGAGAGGAGCAA
GCGCCGGACGTTGCAACGAGAGGATATCCAGGCGGCCATTGCGAACGCCG
ATATTTTGGATTTTTTGGTAAACATCGTGTGAACGTGGAGGGAGAGAGAG
ATAGGTTGATTGGAGAGGGAGTGGCAGATGTGTTTTATATCGAGAGGGGT
GCAAGACAATAAGCCTATTTTGGATAGAGGGAGGGAGAGAGGGAGGGAAG
GTAGAAAGGACGCGGGTGTGTAGATATATCTTGCTTCTAACCCACGGCGT
TGTTCAAATATT
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protein sequence of jgi.p|Nanoce1779_2|591815

>mRNA_5232-protein ID=mRNA_5232-protein|Name=jgi.p|Nanoce1779_2|591815|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MSSGAGGAVQQPYIPTDAEQAEHLQNLIRKLKEFWVEQLAEMESLSLATE
QDFKNYIDLPLARIKRIMKSDEDVHMISAEVLVLFAKACEMFILELTIRA
WCYSERSKRRTLQREDIQAAIANADILDFLVNIV*
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mRNA from alignment at scaffold_12:783039..784109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5232 ID=mRNA_5232|Name=jgi.p|Nanoce1779_2|591815|organism=Nannochloropsis oceanica|type=mRNA|length=1071bp|location=Sequence derived from alignment at scaffold_12:783039..784109- (Nannochloropsis oceanica)
ACAGCATTTGACTTCTGTTTCGTCAGTACGAAACCTTCAAGAGGACTCCT
TGCTTGTAAAGCAGGCCCGCTCACTTCCACCTTTTTCGTCTTCCTCCACG
CCGCACAACATCTGCATCAAGCACGCCATGAGTTCTGGTGCAGGTGGTGC
GGTACAACAACCCTACATCCCCACCGATGCCGAGCAAGCAGAGCACTTGC
AGAATCTGATCCGGAAACTCAAGGAATTTTGGGTGGAGCAACTGGCGGAG
ATGGAAAGCTTGAGTCTGGCCACGGAACAGGTGCGTGTATGTGGATGTAT
GCGTGGGTGCGTGGATAGCGCGTGATTTGGAAGGAGGGAGATTTTTGACT
GGTGACAGAAGTGTTCATTGTGTAATTTCTGACATGTGCAAGCGCTTTGC
TCGTCCTTCCACGCCATGTGAAATGATCACTACAGTCGTTCAAGGCCATA
AACTAATCCTCTTTTCCTCCCATTCTCACTCCTTCTCCCGCCCTCCCCGC
CCCAATAAGGACTTCAAAAACTACATCGACCTCCCTCTGGCCCGAATCAA
GCGCATCATGAAAAGTGATGAAGATGTGCACATGATCAGTGCGGAGGTCC
TGGTTTTGTTCGCCAAGGCCTGCGAGATGTTTATTTTGGAGCTGACCATC
CGCGCGTGGTGCTACAGCGAGAGGAGCAAGCGCCGGACGGTACGCCTCTT
TTTTTATTTTCCTCCCTCCCTCCCTTTCCTTTCCTTATGCTGCATTTTCG
ACGTGTATTTTTCCCCTGCTCTTCTCACTCTAATCCTGCCTCCTTTCCTC
TTTCCCCCCCTCTCCCAAGTTGCAACGAGAGGATATCCAGGCGGCCATTG
CGAACGCCGATATTTTGGATTTTTTGGTAAACATCGTGTGAACGTGGAGG
GAGAGAGAGATAGGTTGATTGGAGAGGGAGTGGCAGATGTGTTTTATATC
GAGAGGGGTGCAAGACAATAAGCCTATTTTGGATAGAGGGAGGGAGAGAG
GGAGGGAAGGTAGAAAGGACGCGGGTGTGTAGATATATCTTGCTTCTAAC
CCACGGCGTTGTTCAAATATT
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Coding sequence (CDS) from alignment at scaffold_12:783039..784109-

>mRNA_5232 ID=mRNA_5232|Name=jgi.p|Nanoce1779_2|591815|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_12:783039..784109- (Nannochloropsis oceanica)
TTGCAACGAGAGGATATCCAGGCGGCCATTGCGAACGCCGATATTTTGGA
TTTTTTGGTAAACATCGTGTGAGACTTCAAAAACTACATCGACCTCCCTC
TGGCCCGAATCAAGCGCATCATGAAAAGTGATGAAGATGTGCACATGATC
AGTGCGGAGGTCCTGGTTTTGTTCGCCAAGGCCTGCGAGATGTTTATTTT
GGAGCTGACCATCCGCGCGTGGTGCTACAGCGAGAGGAGCAAGCGCCGGA
CGATGAGTTCTGGTGCAGGTGGTGCGGTACAACAACCCTACATCCCCACC
GATGCCGAGCAAGCAGAGCACTTGCAGAATCTGATCCGGAAACTCAAGGA
ATTTTGGGTGGAGCAACTGGCGGAGATGGAAAGCTTGAGTCTGGCCACGG
AACAGTTGCAACGAGAGGATATCCAGGCGGCCATTGCGAACGCCGATATT
TTGGATTTTTTGGTAAACATCGTGTGAGACTTCAAAAACTACATCGACCT
CCCTCTGGCCCGAATCAAGCGCATCATGAAAAGTGATGAAGATGTGCACA
TGATCAGTGCGGAGGTCCTGGTTTTGTTCGCCAAGGCCTGCGAGATGTTT
ATTTTGGAGCTGACCATCCGCGCGTGGTGCTACAGCGAGAGGAGCAAGCG
CCGGACGATGAGTTCTGGTGCAGGTGGTGCGGTACAACAACCCTACATCC
CCACCGATGCCGAGCAAGCAGAGCACTTGCAGAATCTGATCCGGAAACTC
AAGGAATTTTGGGTGGAGCAACTGGCGGAGATGGAAAGCTTGAGTCTGGC
CACGGAACAGTTGCAACGAGAGGATATCCAGGCGGCCATTGCGAACGCCG
ATATTTTGGATTTTTTGGTAAACATCGTGTGAGACTTCAAAAACTACATC
GACCTCCCTCTGGCCCGAATCAAGCGCATCATGAAAAGTGATGAAGATGT
GCACATGATCAGTGCGGAGGTCCTGGTTTTGTTCGCCAAGGCCTGCGAGA
TGTTTATTTTGGAGCTGACCATCCGCGCGTGGTGCTACAGCGAGAGGAGC
AAGCGCCGGACGATGAGTTCTGGTGCAGGTGGTGCGGTACAACAACCCTA
CATCCCCACCGATGCCGAGCAAGCAGAGCACTTGCAGAATCTGATCCGGA
AACTCAAGGAATTTTGGGTGGAGCAACTGGCGGAGATGGAAAGCTTGAGT
CTGGCCACGGAACAG
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Synonyms
Publications