jgi.p|Nanoce1779_2|591808, mRNA_5231 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591808
Unique Name	mRNA_5231
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1489
Alignment location	scaffold_12:780594..782328 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591894
Track	FilteredModels2
ProteinId	591808

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:780594..782328 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591808	gene_5231	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591808	mRNA_5231-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5231	CDS_5231	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:780594..782328+
coding sequence from alignment at scaffold_12:780594..782328+

mRNA sequence

>mRNA_5231 ID=mRNA_5231|Name=jgi.p|Nanoce1779_2|591808|organism=Nannochloropsis oceanica|type=mRNA|length=1489bp
GATGGAAAGATCTCAACCGAGTCCACCATCCTCTCCATCAGCGACCGGAT
CAAGAGGAAGGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTACACCTGCCTCTTCCATCTCCACCATAACTACCGACCCTACCTCAGCC
TCCCTCTCAATCATCCAACGGAAGCTCCGGGAGACGGCCCGACAAACCCT
GGAGAGGACGAGTCGAATGGACACGGAATTAAAGGTCGCTAATCAGAAGG
GCCATGGATGGGAAGGGCAGGATATGCACGCGACTGCCGAGTTCCTTCAG
GAAGAGGAAGCGCTTGCTACGGGTGCGGAGGGAGTGCTCGAAAGGCAGGA
GGCGAGAAGAAAGATGATCGCGGCGATTGAGGATGAGGGCATTGAGAGTT
TGAGTCAGCATACAAAGGTCGGTCAGGAATGGAAAGCCAAGGAGGCTCTC
GCCCGAGGCCGGGCTGCCAAAAAAGCACGCAACGCTGCCCGTCGTGCCCG
TCGCTCCCAACGGGAAGAAAATGCCCTCCTCCCCCTGTATAAGAGCCTGA
AGAAAGGGGATAAAGTGGAGGCGAAATGGGGCAAGGACAACCTGTGGTAC
CCGGGCCTGATCAAGGCCTGCATGCATTCTGGCTATCCCATCATGAAAGC
CGAGGTGGTATTTGACGGGTGGGGAAACATAGACGAAGTGTCTTGGCAAG
ACATAAGGCTCCTTCAAGCGGGGTCGGAGGATGAGGACAGCGAGGAGGAG
AGCGAGAGTGAGGGAGAGACAGAGGGCGGGCAGGAGGGAGGAGAGGAGGA
GCAGAGGCCGGTTGTGGGAAGGCCGCGGGCGGTGTGGGAGACGTCTTCGG
AGAAGGAGGATGGCAAGGGTATGATGCTGATGGACCGAGAAAAAAAGTGG
GCGAGAAAGGAGGAGGAAGAGAAGGAGAGATTAGCAAAGCTTTGTAAAGA
AAAAGAAGAGGAGGAGGACGACGAGGAGCAGGGCTTGCTTAGTCCTGTCC
TCCTTCAGGCCAAGGCCCCTTGTGCTTCGGTGGTGGCTGCGGCGAGTGGG
ATGGGAGGAGGAGGAGGAGCAGGAGGCGCAGCAGCAGCAGCAGGAGGTGG
CTGGAAGGCCCGTGCCGCAGCGGCGAGAGATGCGGTCAAACGAAAACAGC
AAGCGGCGGCAGCGGCTGCAACTGCCGCTACTCCTGCCGCTGCTGCTATC
ACTGTTACTCCTACTCCTCCTGCTAGTGCTCCTGTTGCTGCTACTGCTGC
TGCATCGGGAATGTCGGTTGCGGCGTTTGCTTCTAAGCTGGCGCTGAAAG
TAGAGGAGGAAAAGGTATCGATGTTTTTACAGGATCAGGAGAGACCCAGA
TTGTGCATGTCGTGGGGTGGAGGGGAGGGGAAAGGGAAGAAGAAATAGGG
AAAGGAAAGGGAGGAGGAGGAGGAGGAGAGTGAATAATGGAGTAGGGGTG
TACATAGATTCCCGCGGGGCTTGTTGTGCTTGTAAAGGA

protein sequence of jgi.p|Nanoce1779_2|591808

>mRNA_5231-protein ID=mRNA_5231-protein|Name=jgi.p|Nanoce1779_2|591808|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MDTELKVANQKGHGWEGQDMHATAEFLQEEEALATGAEGVLERQEARRKM
IAAIEDEGIESLSQHTKVGQEWKAKEALARGRAAKKARNAARRARRSQRE
ENALLPLYKSLKKGDKVEAKWGKDNLWYPGLIKACMHSGYPIMKAEVVFD
GWGNIDEVSWQDIRLLQAGSEDEDSEEESESEGETEGGQEGGEEEQRPVV
GRPRAVWETSSEKEDGKGMMLMDREKKWARKEEEEKERLAKLCKEKEEEE
DDEEQGLLSPVLLQAKAPCASVVAAASGMGGGGGAGGAAAAAGGGWKARA
AAARDAVKRKQQAAAAAATAATPAAAAITVTPTPPASAPVAATAAASGMS
VAAFASKLALKVEEEKVSMFLQDQERPRLCMSWGGGEGKGKKK*

mRNA from alignment at scaffold_12:780594..782328+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5231 ID=mRNA_5231|Name=jgi.p|Nanoce1779_2|591808|organism=Nannochloropsis oceanica|type=mRNA|length=1735bp|location=Sequence derived from alignment at scaffold_12:780594..782328+ (Nannochloropsis oceanica)
GATGGAAAGATCTCAACCGAGTCCACCATCCTCTCCATCAGCGACCGGAT
CAAGAGGAAGGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTACACCTGCCTCTTCCATCTCCACCATAACTACCGACCCTACCTCAGCC
TCCCTCTCAATCATCCAACGGAAGCTCCGGGAGACGGCCCGACAAACCCT
GGAGAGGACGAGTCGAATGGACACGGAATTAAAGGTCGCTAATCAGAAGG
GCCATGGATGGGAAGGGCAGGATATGCACGCGACTGCCGAGTTCCTTCAG
GAAGAGGAAGCGCTTGCTACGGGTGCGGAGGGAGTGCTCGAAAGGCAGGA
GGCGAGAAGAAAGATGATCGCGGCGATTGAGGATGAGGGCATTGAGAGTT
TGAGTCAGCATACAAAGGTAGCGAGGGGACGAGGGAGAAAGGGAGGGGAG
GAGCAGGAGTGTGTAATGATAGCTCAGATCCACATGGATTACCCCTCGAT
TTTCCCACATTTCTTTTCTCGATCTCCCCCCCCTCTTCCCTTCAGGTCGG
TCAGGAATGGAAAGCCAAGGAGGCTCTCGCCCGAGGCCGGGCTGCCAAAA
AAGCACGCAACGCTGCCCGTCGTGCCCGTCGCTCCCAACGGGAAGAAAAT
GCCCTCCTCCCCCTGTATAAGAGCCTGAAGAAAGGGGATAAAGTGGAGGC
GAAATGGGGCAAGGACAACCTGTGGTACCCGGGCCTGATCAAGGTGGGAT
CTTATTACATCGAGGTTTATCTTCCTTGGTTCTCTTGTCCTCTTTCAGAT
TTATGCGGTGTGTCTGATCCTTTCCCTCCCTCCCTCTCTCCCTTCCTCCC
TCTTTCCCTAGGCCTGCATGCATTCTGGCTATCCCATCATGAAAGCCGAG
GTGGTATTTGACGGGTGGGGAAACATAGACGAAGTGTCTTGGCAAGACAT
AAGGCTCCTTCAAGCGGGGTCGGAGGATGAGGACAGCGAGGAGGAGAGCG
AGAGTGAGGGAGAGACAGAGGGCGGGCAGGAGGGAGGAGAGGAGGAGCAG
AGGCCGGTTGTGGGAAGGCCGCGGGCGGTGTGGGAGACGTCTTCGGAGAA
GGAGGATGGCAAGGGTATGATGCTGATGGACCGAGAAAAAAAGTGGGCGA
GAAAGGAGGAGGAAGAGAAGGAGAGATTAGCAAAGCTTTGTAAAGAAAAA
GAAGAGGAGGAGGACGACGAGGAGCAGGGCTTGCTTAGTCCTGTCCTCCT
TCAGGCCAAGGCCCCTTGTGCTTCGGTGGTGGCTGCGGCGAGTGGGATGG
GAGGAGGAGGAGGAGCAGGAGGCGCAGCAGCAGCAGCAGGAGGTGGCTGG
AAGGCCCGTGCCGCAGCGGCGAGAGATGCGGTCAAACGAAAACAGCAAGC
GGCGGCAGCGGCTGCAACTGCCGCTACTCCTGCCGCTGCTGCTATCACTG
TTACTCCTACTCCTCCTGCTAGTGCTCCTGTTGCTGCTACTGCTGCTGCA
TCGGGAATGTCGGTTGCGGCGTTTGCTTCTAAGCTGGCGCTGAAAGTAGA
GGAGGAAAAGGTATCGATGTTTTTACAGGATCAGGAGAGACCCAGATTGT
GCATGTCGTGGGGTGGAGGGGAGGGGAAAGGGAAGAAGAAATAGGGAAAG
GAAAGGGAGGAGGAGGAGGAGGAGAGTGAATAATGGAGTAGGGGTGTACA
TAGATTCCCGCGGGGCTTGTTGTGCTTGTAAAGGA

Coding sequence (CDS) from alignment at scaffold_12:780594..782328+

>mRNA_5231 ID=mRNA_5231|Name=jgi.p|Nanoce1779_2|591808|organism=Nannochloropsis oceanica|type=CDS|length=3546bp|location=Sequence derived from alignment at scaffold_12:780594..782328+ (Nannochloropsis oceanica)
ATGGACACGGAATTAAAGGTCGCTAATCAGAAGGGCCATGGATGGGAAGG
GCAGGATATGCACGCGACTGCCGAGTTCCTTCAGGAAGAGGAAGCGCTTG
CTACGGGTGCGGAGGGAGTGCTCGAAAGGCAGGAGGCGAGAAGAAAGATG
ATCGCGGCGATTGAGGATGAGGGCATTGAGAGTTTGAGTCAGCATACAAA
GGTCGGTCAGGAATGGAAAGCCAAGGAGGCTCTCGCCCGAGGCCGGGCTG
CCAAAAAAGCACGCAACGCTGCCCGTCGTGCCCGTCGCTCCCAACGGGAA
GAAAATGCCCTCCTCCCCCTGTATAAGAGCCTGAAGAAAGGGGATAAAGT
GGAGGCGAAATGGGGCAAGGACAACCTGTGGTACCCGGGCCTGATCAAGG
CCTGCATGCATTCTGGCTATCCCATCATGAAAGCCGAGGTGGTATTTGAC
GGGTGGGGAAACATAGACGAAGTGTCTTGGCAAGACATAAGGCTCCTTCA
AGCGGGGTCGGAGGATGAGGACAGCGAGGAGGAGAGCGAGAGTGAGGGAG
AGACAGAGGGCGGGCAGGAGGGAGGAGAGGAGGAGCAGAGGCCGGTTGTG
GGAAGGCCGCGGGCGGTGTGGGAGACGTCTTCGGAGAAGGAGGATGGCAA
GGGTATGATGCTGATGGACCGAGAAAAAAAGTGGGCGAGAAAGGAGGAGG
AAGAGAAGGAGAGATTAGCAAAGCTTTGTAAAGAAAAAGAAGAGGAGGAG
GACGACGAGGAGCAGGGCTTGCTTAGTCCTGTCCTCCTTCAGGCCAAGGC
CCCTTGTGCTTCGGTGGTGGCTGCGGCGAGTGGGATGGGAGGAGGAGGAG
GAGCAGGAGGCGCAGCAGCAGCAGCAGGAGGTGGCTGGAAGGCCCGTGCC
GCAGCGGCGAGAGATGCGGTCAAACGAAAACAGCAAGCGGCGGCAGCGGC
TGCAACTGCCGCTACTCCTGCCGCTGCTGCTATCACTGTTACTCCTACTC
CTCCTGCTAGTGCTCCTGTTGCTGCTACTGCTGCTGCATCGGGAATGTCG
GTTGCGGCGTTTGCTTCTAAGCTGGCGCTGAAAGTAGAGGAGGAAAAGGT
ATCGATGTTTTTACAGGATCAGGAGAGACCCAGATTGTGCATGTCGTGGG
GTGGAGGGGAGGGGAAAGGGAAGAAGAAATAGATGGACACGGAATTAAAG
GTCGCTAATCAGAAGGGCCATGGATGGGAAGGGCAGGATATGCACGCGAC
TGCCGAGTTCCTTCAGGAAGAGGAAGCGCTTGCTACGGGTGCGGAGGGAG
TGCTCGAAAGGCAGGAGGCGAGAAGAAAGATGATCGCGGCGATTGAGGAT
GAGGGCATTGAGAGTTTGAGTCAGCATACAAAGGTCGGTCAGGAATGGAA
AGCCAAGGAGGCTCTCGCCCGAGGCCGGGCTGCCAAAAAAGCACGCAACG
CTGCCCGTCGTGCCCGTCGCTCCCAACGGGAAGAAAATGCCCTCCTCCCC
CTGTATAAGAGCCTGAAGAAAGGGGATAAAGTGGAGGCGAAATGGGGCAA
GGACAACCTGTGGTACCCGGGCCTGATCAAGGCCTGCATGCATTCTGGCT
ATCCCATCATGAAAGCCGAGGTGGTATTTGACGGGTGGGGAAACATAGAC
GAAGTGTCTTGGCAAGACATAAGGCTCCTTCAAGCGGGGTCGGAGGATGA
GGACAGCGAGGAGGAGAGCGAGAGTGAGGGAGAGACAGAGGGCGGGCAGG
AGGGAGGAGAGGAGGAGCAGAGGCCGGTTGTGGGAAGGCCGCGGGCGGTG
TGGGAGACGTCTTCGGAGAAGGAGGATGGCAAGGGTATGATGCTGATGGA
CCGAGAAAAAAAGTGGGCGAGAAAGGAGGAGGAAGAGAAGGAGAGATTAG
CAAAGCTTTGTAAAGAAAAAGAAGAGGAGGAGGACGACGAGGAGCAGGGC
TTGCTTAGTCCTGTCCTCCTTCAGGCCAAGGCCCCTTGTGCTTCGGTGGT
GGCTGCGGCGAGTGGGATGGGAGGAGGAGGAGGAGCAGGAGGCGCAGCAG
CAGCAGCAGGAGGTGGCTGGAAGGCCCGTGCCGCAGCGGCGAGAGATGCG
GTCAAACGAAAACAGCAAGCGGCGGCAGCGGCTGCAACTGCCGCTACTCC
TGCCGCTGCTGCTATCACTGTTACTCCTACTCCTCCTGCTAGTGCTCCTG
TTGCTGCTACTGCTGCTGCATCGGGAATGTCGGTTGCGGCGTTTGCTTCT
AAGCTGGCGCTGAAAGTAGAGGAGGAAAAGGTATCGATGTTTTTACAGGA
TCAGGAGAGACCCAGATTGTGCATGTCGTGGGGTGGAGGGGAGGGGAAAG
GGAAGAAGAAATAGATGGACACGGAATTAAAGGTCGCTAATCAGAAGGGC
CATGGATGGGAAGGGCAGGATATGCACGCGACTGCCGAGTTCCTTCAGGA
AGAGGAAGCGCTTGCTACGGGTGCGGAGGGAGTGCTCGAAAGGCAGGAGG
CGAGAAGAAAGATGATCGCGGCGATTGAGGATGAGGGCATTGAGAGTTTG
AGTCAGCATACAAAGGTCGGTCAGGAATGGAAAGCCAAGGAGGCTCTCGC
CCGAGGCCGGGCTGCCAAAAAAGCACGCAACGCTGCCCGTCGTGCCCGTC
GCTCCCAACGGGAAGAAAATGCCCTCCTCCCCCTGTATAAGAGCCTGAAG
AAAGGGGATAAAGTGGAGGCGAAATGGGGCAAGGACAACCTGTGGTACCC
GGGCCTGATCAAGGCCTGCATGCATTCTGGCTATCCCATCATGAAAGCCG
AGGTGGTATTTGACGGGTGGGGAAACATAGACGAAGTGTCTTGGCAAGAC
ATAAGGCTCCTTCAAGCGGGGTCGGAGGATGAGGACAGCGAGGAGGAGAG
CGAGAGTGAGGGAGAGACAGAGGGCGGGCAGGAGGGAGGAGAGGAGGAGC
AGAGGCCGGTTGTGGGAAGGCCGCGGGCGGTGTGGGAGACGTCTTCGGAG
AAGGAGGATGGCAAGGGTATGATGCTGATGGACCGAGAAAAAAAGTGGGC
GAGAAAGGAGGAGGAAGAGAAGGAGAGATTAGCAAAGCTTTGTAAAGAAA
AAGAAGAGGAGGAGGACGACGAGGAGCAGGGCTTGCTTAGTCCTGTCCTC
CTTCAGGCCAAGGCCCCTTGTGCTTCGGTGGTGGCTGCGGCGAGTGGGAT
GGGAGGAGGAGGAGGAGCAGGAGGCGCAGCAGCAGCAGCAGGAGGTGGCT
GGAAGGCCCGTGCCGCAGCGGCGAGAGATGCGGTCAAACGAAAACAGCAA
GCGGCGGCAGCGGCTGCAACTGCCGCTACTCCTGCCGCTGCTGCTATCAC
TGTTACTCCTACTCCTCCTGCTAGTGCTCCTGTTGCTGCTACTGCTGCTG
CATCGGGAATGTCGGTTGCGGCGTTTGCTTCTAAGCTGGCGCTGAAAGTA
GAGGAGGAAAAGGTATCGATGTTTTTACAGGATCAGGAGAGACCCAGATT
GTGCATGTCGTGGGGTGGAGGGGAGGGGAAAGGGAAGAAGAAATAG

Synonyms

Publications