jgi.p|Nanoce1779_2|591806, mRNA_5230 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591806
Unique NamemRNA_5230
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1229
Alignment locationscaffold_12:779505..780748 -

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Properties
Property NameValue
TranscriptId591892
TrackFilteredModels2
ProteinId591806
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:779505..780748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591806gene_5230Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591806mRNA_5230-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5230CDS_5230Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5230 ID=mRNA_5230|Name=jgi.p|Nanoce1779_2|591806|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp
AGGGAGGCTGAGGTAGGGTCGGTAGTTATGGTGGAGATGGAAGAGGCAGG
TGTAGCAGCAGCAGCAGCAGCAGCAGCGACCTTCCTCTTGATCCGGTCGC
TGATGGAGAGGATGGTGGACTCGGTTGAGATCTTTCCATCCTTCATATCC
CTCGACCTATCCATTATTTTTTCTCTGTACTTGTCACGGCTCTGATTGTC
TCGACGGCTGGAGCAGTTTCCTTTCCTACTCCTACTCCTGCTCCTGCTCC
TGCTCCTGCTCCTACTTTTTCGTTTGTTTCTGCTATTTTCTCCATTGTTC
TTGCTCTCATGTGTCCTAGCCTTCTGAATTTCTCTCCCAAATTCATCTAT
CTCTACCTCCTCCTCTTTACTGTTACTCCTTTCTCTCTTTTTCCTGTCGT
CCCTGAGTCGCTCCCTGCCTCCATCCCTCGTCCTCCCCCTGCTGCGACTG
CGCTTCTCTTCTCGTCCTCGGAACTGATGCATTTTCTCATTCGTCTCACG
CTCGCTACTGTGGCTCCGAAATTCCTCCTCGTGTTGATTATGATGCCTTT
CTTCACGTCTTCTTTCGTGGCGGTTGCGGTGGCTGTGGTCGCGCTCGCGG
TGGTGGAGATGTGGGGAGCGCGAACGGGAGCGTCGACGGAGAGAGCCGTT
GCTACTGCTGCTGCCGCCGCTGGCCATCTTCTCCCGCCTATCCTTTCCCT
TATTTTTTTCCTTCCTTTCTATCTCCTGCTTTCTTTTGTCGCTATCGTCA
TCGTCGTCGGTTCGGGCGTTCACCTTGGCCTCCTTGCGTCTTGGTGATGA
TAGTCGCGTTGGGGGTAGGGGAGGCGAGGTTGGACCGGAACAGAATCCCA
AGCCGCGTTTGCTACCCTTCGCCACAGCATGAGATACCGTCTGGTTGTAG
AGCCGCGCTTGATCATCCTCCGTGAAGCCACCGCCGCTGCTGCTCATGGG
TTTGCTTGTGTGATGGTTTGGATGTAATGGCGTAAGAATGTAAGAATGAA
TGCGACTTTTTTTGGAAAGATAGAGGCAGGGAATGGGAGCGGGAAGGGTA
AAGCGACATATTCCGTGAGACCAAAATGGAGACGGACATGCCTCCATAGA
GGAAGCAAAGAAGTTTGAAAAAAAAATGAGTCCTCCAGTGTGTCTTTGTC
TTATCAGGAACAAATGATTACAATGCTTCGCTTTGCCAACGGTTCTGGGG
TCTCTTCCACCCGCCCCACTTTTCTTCTG
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protein sequence of jgi.p|Nanoce1779_2|591806

>mRNA_5230-protein ID=mRNA_5230-protein|Name=jgi.p|Nanoce1779_2|591806|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MCPSLLNFSPKFIYLYLLLFTVTPFSLFPVVPESLPASIPRPPPAATALL
FSSSELMHFLIRLTLATVAPKFLLVLIMMPFFTSSFVAVAVAVVALAVVE
MWGARTGASTERAVATAAAAAGHLLPPILSLIFFLPFYLLLSFVAIVIVV
GSGVHLGLLASW*
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mRNA from alignment at scaffold_12:779505..780748-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5230 ID=mRNA_5230|Name=jgi.p|Nanoce1779_2|591806|organism=Nannochloropsis oceanica|type=mRNA|length=1244bp|location=Sequence derived from alignment at scaffold_12:779505..780748- (Nannochloropsis oceanica)
AGGGAGGCTGAGGTAGGGTCGGTAGTTATGGTGGAGATGGAAGAGGCAGG
TGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACCTTCC
TCTTGATCCGGTCGCTGATGGAGAGGATGGTGGACTCGGTTGAGATCTTT
CCATCCTTCATATCCCTCGACCTATCCATTATTTTTTCTCTGTACTTGTC
ACGGCTCTGATTGTCTCGACGGCTGGAGCAGTTTCCTTTCCTACTCCTAC
TCCTGCTCCTGCTCCTGCTCCTGCTCCTACTTTTTCGTTTGTTTCTGCTA
TTTTCTCCATTGTTCTTGCTCTCATGTGTCCTAGCCTTCTGAATTTCTCT
CCCAAATTCATCTATCTCTACCTCCTCCTCTTTACTGTTACTCCTTTCTC
TCTTTTTCCTGTCGTCCCTGAGTCGCTCCCTGCCTCCATCCCTCGTCCTC
CCCCTGCTGCGACTGCGCTTCTCTTCTCGTCCTCGGAACTGATGCATTTT
CTCATTCGTCTCACGCTCGCTACTGTGGCTCCGAAATTCCTCCTCGTGTT
GATTATGATGCCTTTCTTCACGTCTTCTTTCGTGGCGGTTGCGGTGGCTG
TGGTCGCGCTCGCGGTGGTGGAGATGTGGGGAGCGCGAACGGGAGCGTCG
ACGGAGAGAGCCGTTGCTACTGCTGCTGCCGCCGCTGGCCATCTTCTCCC
GCCTATCCTTTCCCTTATTTTTTTCCTTCCTTTCTATCTCCTGCTTTCTT
TTGTCGCTATCGTCATCGTCGTCGGTTCGGGCGTTCACCTTGGCCTCCTT
GCGTCTTGGTGATGATAGTCGCGTTGGGGGTAGGGGAGGCGAGGTTGGAC
CGGAACAGAATCCCAAGCCGCGTTTGCTACCCTTCGCCACAGCATGAGAT
ACCGTCTGGTTGTAGAGCCGCGCTTGATCATCCTCCGTGAAGCCACCGCC
GCTGCTGCTCATGGGTTTGCTTGTGTGATGGTTTGGATGTAATGGCGTAA
GAATGTAAGAATGAATGCGACTTTTTTTGGAAAGATAGAGGCAGGGAATG
GGAGCGGGAAGGGTAAAGCGACATATTCCGTGAGACCAAAATGGAGACGG
ACATGCCTCCATAGAGGAAGCAAAGAAGTTTGAAAAAAAAATGAGTCCTC
CAGTGTGTCTTTGTCTTATCAGGAACAAATGATTACAATGCTTCGCTTTG
CCAACGGTTCTGGGGTCTCTTCCACCCGCCCCACTTTTCTTCTG
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Coding sequence (CDS) from alignment at scaffold_12:779505..780748-

>mRNA_5230 ID=mRNA_5230|Name=jgi.p|Nanoce1779_2|591806|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_12:779505..780748- (Nannochloropsis oceanica)
ATGTGTCCTAGCCTTCTGAATTTCTCTCCCAAATTCATCTATCTCTACCT
CCTCCTCTTTACTGTTACTCCTTTCTCTCTTTTTCCTGTCGTCCCTGAGT
CGCTCCCTGCCTCCATCCCTCGTCCTCCCCCTGCTGCGACTGCGCTTCTC
TTCTCGTCCTCGGAACTGATGCATTTTCTCATTCGTCTCACGCTCGCTAC
TGTGGCTCCGAAATTCCTCCTCGTGTTGATTATGATGCCTTTCTTCACGT
CTTCTTTCGTGGCGGTTGCGGTGGCTGTGGTCGCGCTCGCGGTGGTGGAG
ATGTGGGGAGCGCGAACGGGAGCGTCGACGGAGAGAGCCGTTGCTACTGC
TGCTGCCGCCGCTGGCCATCTTCTCCCGCCTATCCTTTCCCTTATTTTTT
TCCTTCCTTTCTATCTCCTGCTTTCTTTTGTCGCTATCGTCATCGTCGTC
GGTTCGGGCGTTCACCTTGGCCTCCTTGCGTCTTGGTGA
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Synonyms
Publications