jgi.p|Nanoce1779_2|577573, mRNA_523 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577573
Unique NamemRNA_523
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1097
Alignment locationscaffold_3:1268169..1269913 +

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Properties
Property NameValue
TranscriptId577659
TrackFilteredModels2
ProteinId577573
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1268169..1269913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577573gene_523Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577573mRNA_523-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_523CDS_523Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_523 ID=mRNA_523|Name=jgi.p|Nanoce1779_2|577573|organism=Nannochloropsis oceanica|type=mRNA|length=1097bp
ACAGCACCATCACGAAAAGAAGAGCTAGCAAAATCCAGCACCGTCAGCAA
GGATGGGAAAGCATGGCAGCAAGCACCAGCAGCAGCCCAAGAAGCGGCAA
CAAGTGGACAACCAGGAATGGGAAGCTGTCCTGAAGGAGGCTAAAGTCGA
CGCCGTCCACAGCATTCTCATCACCCCACCGCAAAAACTCAACTTGGCGC
TGGTGGCTCTTTTTATGCCGTCCTTGCCTGTCGTCACTTTTTACAGCAGT
ATCATGTTTGAATTGTCCTTAGGGCAGTACGCTCCTCAATTCGTCGGCGT
CTCCGTGATTGCCGGCCTGCTCTTATACTACACATACGTACAAGTGGCCA
ATCTAAAGGAGGAAAAGCTTATCAAGCAACGAGATTTGATGCCCAGTGGA
AACCTGAGCAAAAAGGATAAAGAGGCTTGGCAAGCGACGCTGTACTCTTC
CACCACGATGGAGTCCCTATCCTACGCTCTCTTTGTCTGCAATGCTCTCT
ACCTCGCCGCATTCCTCTACCTGGCTTTTTCCGCGTCGCCTAAATACGGC
ATCGTCGCCGGTACAAACCACCTATTGAGCACCCTCCTCCCCGCAGTTCT
TCTCGCTGCCCGACCAAGCTTTTTTGTGTGGTGATCTAGGGGACAGGGAT
GGATGGAAGAAGTGACCGAGGGGGTGAGAGGCAATGTAGTATAAATTAGA
TCAAGACTAAGATGTGGCTCGGTTCTGTAAGAGGCGGCATAAGAAGGGAG
GGGAAAAGGAAAGCAGATAAGACAAACTGTTACTACCAATGTCATCGCAT
GAGATCTTTCTGTCATAGCATTTCATTTACGTTCGTGGGATTGCTTCGTC
CCTGTGTTTTATAAGAGCTAACTATCGCGTTGGGGTGGGTTTATCAGAAG
CCATCGCCTTGACAGCAGCAGCACTAGGGGGAGTACCGATTACCACATTT
CCACCCCGATTGCCACCCCCCACCACTACAGGCTATTATAAAGGCCACGG
CTTCAAGTGGTACCTCGTCGGTTGTTTCTTGAGCAACGTTTGGACGTGCG
TGCGGAGAGGGGACCAAATCTCGCAATACTTTGAGTGCTGCCCGCCG
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protein sequence of jgi.p|Nanoce1779_2|577573

>mRNA_523-protein ID=mRNA_523-protein|Name=jgi.p|Nanoce1779_2|577573|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MGKHGSKHQQQPKKRQQVDNQEWEAVLKEAKVDAVHSILITPPQKLNLAL
VALFMPSLPVVTFYSSIMFELSLGQYAPQFVGVSVIAGLLLYYTYVQVAN
LKEEKLIKQRDLMPSGNLSKKDKEAWQATLYSSTTMESLSYALFVCNALY
LAAFLYLAFSASPKYGIVAGTNHLLSTLLPAVLLAARPSFFVW*
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mRNA from alignment at scaffold_3:1268169..1269913+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_523 ID=mRNA_523|Name=jgi.p|Nanoce1779_2|577573|organism=Nannochloropsis oceanica|type=mRNA|length=1745bp|location=Sequence derived from alignment at scaffold_3:1268169..1269913+ (Nannochloropsis oceanica)
ACAGCACCATCACGAAAAGAAGAGCTAGCAAAATCCAGCACCGTCAGCAA
GGATGGGAAAGCATGGCAGCAAGCACCAGCAGCAGCCCAAGAAGCGGCAA
CAAGTGGACAACCAGGAATGGGAAGCTGTCCTGAAGGAGGCTAAAGTCGA
CGCCGTCCACAGCATTCTCATCACCCCACCGCAAAGTTAGTTCTTGATAT
GTGTACATGTGGGTCTAGAGATGGCCAAATGGGCTTGTTTGTCTGTAGAC
ACGACGGACGCTGTTGGATCCTGCGATACCATCTCGCTACCCAACACGAT
AATTTTGTATTAACAACAACTATACACGCACATACGCACATAAATACGCA
CAGAACTCAACTTGGCGCTGGTGGCTCTTTTTATGCCGTCCTTGCCTGTC
GTCACTTTTTACAGCAGTATCATGTTTGAATTGTCCTTAGGGCAGGTGAG
AGGTGAAGGATGCGAAATTGAGTGAGGGCATAGATGGTTTCGTTTTGTGT
GGGTGCTTGGACGCTTGGACGCTTGGACGCAAGTAATTGCCAAAGTGGTC
ATTTAAAGCATTCTGGCATGTAGTTACGCATATTCTTACATGTGGCTTTG
CTTATCTCTTCCCTCTGAACCCCGATCCTCCCTCTTTCAGTACGCTCCTC
AATTCGTCGGCGTCTCCGTGATTGCCGGCCTGCTCTTATACTACACATAC
GTACAAGTGGCCAATCTAAAGGAGGAAAAGCTTATCAAGCAACGGTGCGT
ACACTAAAGAAAAGTACATTGAAGGGGGGGGATGAGCACGGGATTGTTTT
CACAGCCTGCAGGATAAATTAGGATTGTTCCATGCGATGGGTAGTTGATC
TTAACTCTGTCTACATCTCCCTCTTTTCCCCGCATGAATATAGAGATTTG
ATGCCCAGTGGAAACCTGAGCAAAAAGGATAAAGAGGCTTGGCAAGCGAC
GCTGTACTCTTCCACCACGATGGAGTCCCTATCCTACGCTCTCTTTGTCT
GCAATGCTCTCTACCTCGTACGTACATCAATGTTTGCCCTATTTGCCGCC
AGTATCTCGTTCTTGTAGCCAGAAAGACTGAGAAAGGCTGTCATCATCGT
CCAATTATGCTCACAAAACGCCCCCTCTTTCTCTCAATTTCTCCTTTGCG
CAGGCCGCATTCCTCTACCTGGCTTTTTCCGCGTCGCCTAAATACGGCAT
CGTCGCCGGTACAAACCACCTATTGAGCACCCTCCTCCCCGCAGTTCTTC
TCGCTGCCCGACCAAGCTTTTTTGTGTGGTGATCTAGGGGACAGGGATGG
ATGGAAGAAGTGACCGAGGGGGTGAGAGGCAATGTAGTATAAATTAGATC
AAGACTAAGATGTGGCTCGGTTCTGTAAGAGGCGGCATAAGAAGGGAGGG
GAAAAGGAAAGCAGATAAGACAAACTGTTACTACCAATGTCATCGCATGA
GATCTTTCTGTCATAGCATTTCATTTACGTTCGTGGGATTGCTTCGTCCC
TGTGTTTTATAAGAGCTAACTATCGCGTTGGGGTGGGTTTATCAGAAGCC
ATCGCCTTGACAGCAGCAGCACTAGGGGGAGTACCGATTACCACATTTCC
ACCCCGATTGCCACCCCCCACCACTACAGGCTATTATAAAGGCCACGGCT
TCAAGTGGTACCTCGTCGGTTGTTTCTTGAGCAACGTTTGGACGTGCGTG
CGGAGAGGGGACCAAATCTCGCAATACTTTGAGTGCTGCCCGCCG
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Coding sequence (CDS) from alignment at scaffold_3:1268169..1269913+

>mRNA_523 ID=mRNA_523|Name=jgi.p|Nanoce1779_2|577573|organism=Nannochloropsis oceanica|type=CDS|length=2910bp|location=Sequence derived from alignment at scaffold_3:1268169..1269913+ (Nannochloropsis oceanica)
ATGGGAAAGCATGGCAGCAAGCACCAGCAGCAGCCCAAGAAGCGGCAACA
AGTGGACAACCAGGAATGGGAAGCTGTCCTGAAGGAGGCTAAAGTCGACG
CCGTCCACAGCATTCTCATCACCCCACCGCAAAAACTCAACTTGGCGCTG
GTGGCTCTTTTTATGCCGTCCTTGCCTGTCGTCACTTTTTACAGCAGTAT
CATGTTTGAATTGTCCTTAGGGCAGTACGCTCCTCAATTCGTCGGCGTCT
CCGTGATTGCCGGCCTGCTCTTATACTACACATACGTACAAGTGGCCAAT
CTAAAGGAGGAAAAGCTTATCAAGCAACGAGATTTGATGCCCAGTGGAAA
CCTGAGCAAAAAGGATAAAGAGGCTTGGCAAGCGACGCTGTACTCTTCCA
CCACGATGGAGTCCCTATCCTACGCTCTCTTTGTCTGCAATGCTCTCTAC
CTCGCCGCATTCCTCTACCTGGCTTTTTCCGCGTCGCCTAAATACGGCAT
CGTCGCCGGTACAAACCACCTATTGAGCACCCTCCTCCCCGCAGTTCTTC
TCGCTGCCCGACCAAGCTTTTTTGTGTGGTGAATGGGAAAGCATGGCAGC
AAGCACCAGCAGCAGCCCAAGAAGCGGCAACAAGTGGACAACCAGGAATG
GGAAGCTGTCCTGAAGGAGGCTAAAGTCGACGCCGTCCACAGCATTCTCA
TCACCCCACCGCAAAAACTCAACTTGGCGCTGGTGGCTCTTTTTATGCCG
TCCTTGCCTGTCGTCACTTTTTACAGCAGTATCATGTTTGAATTGTCCTT
AGGGCAGTACGCTCCTCAATTCGTCGGCGTCTCCGTGATTGCCGGCCTGC
TCTTATACTACACATACGTACAAGTGGCCAATCTAAAGGAGGAAAAGCTT
ATCAAGCAACGAGATTTGATGCCCAGTGGAAACCTGAGCAAAAAGGATAA
AGAGGCTTGGCAAGCGACGCTGTACTCTTCCACCACGATGGAGTCCCTAT
CCTACGCTCTCTTTGTCTGCAATGCTCTCTACCTCGCCGCATTCCTCTAC
CTGGCTTTTTCCGCGTCGCCTAAATACGGCATCGTCGCCGGTACAAACCA
CCTATTGAGCACCCTCCTCCCCGCAGTTCTTCTCGCTGCCCGACCAAGCT
TTTTTGTGTGGTGAATGGGAAAGCATGGCAGCAAGCACCAGCAGCAGCCC
AAGAAGCGGCAACAAGTGGACAACCAGGAATGGGAAGCTGTCCTGAAGGA
GGCTAAAGTCGACGCCGTCCACAGCATTCTCATCACCCCACCGCAAAAAC
TCAACTTGGCGCTGGTGGCTCTTTTTATGCCGTCCTTGCCTGTCGTCACT
TTTTACAGCAGTATCATGTTTGAATTGTCCTTAGGGCAGTACGCTCCTCA
ATTCGTCGGCGTCTCCGTGATTGCCGGCCTGCTCTTATACTACACATACG
TACAAGTGGCCAATCTAAAGGAGGAAAAGCTTATCAAGCAACGAGATTTG
ATGCCCAGTGGAAACCTGAGCAAAAAGGATAAAGAGGCTTGGCAAGCGAC
GCTGTACTCTTCCACCACGATGGAGTCCCTATCCTACGCTCTCTTTGTCT
GCAATGCTCTCTACCTCGCCGCATTCCTCTACCTGGCTTTTTCCGCGTCG
CCTAAATACGGCATCGTCGCCGGTACAAACCACCTATTGAGCACCCTCCT
CCCCGCAGTTCTTCTCGCTGCCCGACCAAGCTTTTTTGTGTGGTGAATGG
GAAAGCATGGCAGCAAGCACCAGCAGCAGCCCAAGAAGCGGCAACAAGTG
GACAACCAGGAATGGGAAGCTGTCCTGAAGGAGGCTAAAGTCGACGCCGT
CCACAGCATTCTCATCACCCCACCGCAAAAACTCAACTTGGCGCTGGTGG
CTCTTTTTATGCCGTCCTTGCCTGTCGTCACTTTTTACAGCAGTATCATG
TTTGAATTGTCCTTAGGGCAGTACGCTCCTCAATTCGTCGGCGTCTCCGT
GATTGCCGGCCTGCTCTTATACTACACATACGTACAAGTGGCCAATCTAA
AGGAGGAAAAGCTTATCAAGCAACGAGATTTGATGCCCAGTGGAAACCTG
AGCAAAAAGGATAAAGAGGCTTGGCAAGCGACGCTGTACTCTTCCACCAC
GATGGAGTCCCTATCCTACGCTCTCTTTGTCTGCAATGCTCTCTACCTCG
CCGCATTCCTCTACCTGGCTTTTTCCGCGTCGCCTAAATACGGCATCGTC
GCCGGTACAAACCACCTATTGAGCACCCTCCTCCCCGCAGTTCTTCTCGC
TGCCCGACCAAGCTTTTTTGTGTGGTGAATGGGAAAGCATGGCAGCAAGC
ACCAGCAGCAGCCCAAGAAGCGGCAACAAGTGGACAACCAGGAATGGGAA
GCTGTCCTGAAGGAGGCTAAAGTCGACGCCGTCCACAGCATTCTCATCAC
CCCACCGCAAAAACTCAACTTGGCGCTGGTGGCTCTTTTTATGCCGTCCT
TGCCTGTCGTCACTTTTTACAGCAGTATCATGTTTGAATTGTCCTTAGGG
CAGTACGCTCCTCAATTCGTCGGCGTCTCCGTGATTGCCGGCCTGCTCTT
ATACTACACATACGTACAAGTGGCCAATCTAAAGGAGGAAAAGCTTATCA
AGCAACGAGATTTGATGCCCAGTGGAAACCTGAGCAAAAAGGATAAAGAG
GCTTGGCAAGCGACGCTGTACTCTTCCACCACGATGGAGTCCCTATCCTA
CGCTCTCTTTGTCTGCAATGCTCTCTACCTCGCCGCATTCCTCTACCTGG
CTTTTTCCGCGTCGCCTAAATACGGCATCGTCGCCGGTACAAACCACCTA
TTGAGCACCCTCCTCCCCGCAGTTCTTCTCGCTGCCCGACCAAGCTTTTT
TGTGTGGTGA
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Synonyms
Publications