jgi.p|Nanoce1779_2|591796, mRNA_5227 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591796
Unique Name	mRNA_5227
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1336
Alignment location	scaffold_12:773685..776087 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591882
Track	FilteredModels2
ProteinId	591796

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:773685..776087 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591796	gene_5227	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591796	mRNA_5227-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5227	CDS_5227	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:773685..776087+
coding sequence from alignment at scaffold_12:773685..776087+

mRNA sequence

>mRNA_5227 ID=mRNA_5227|Name=jgi.p|Nanoce1779_2|591796|organism=Nannochloropsis oceanica|type=mRNA|length=1336bp
ACAGACGAGCAAACGATGGAAGAAGGTCCACCACCCCCGCCACCCCCGCC
CTCAAACGAGATTGTGGATATAACCGACAAGATTGCCAAGTCGGAGTGTT
TTGTGTTGAACGCGGATCCCAAGTACCCGTGGGACAACCTATTTATGGGC
GATGATCGTCTTCAGCTCCGATCTGATACCGACGAGCAATTGGTGTTGCA
TTTGGTGTTTTCTGAATCAGTGAAAGTGCATAGCATGAATCTTGTCGCGC
CAGAGCCAGACGCGGCCCCTACCACGGTAAAGCTGTACTTGAATAAGACC
TCCTTCTCCTTCGATGACGCCGAGAGTATCGAGCCCACGCAGGTACTGGA
GCTGACCGAGGAGGATCACAAGCCCGACAAGGTGACGCTGCTGAAATTCG
TCAAGTTCCAGCGCGTCTCCTCACTGACCATATTCATCGAGAGCAACGGG
GGCGCTGAATACACAGCTCTATCCAAGCTTCGATTGTTTGGCACGCCGCT
GCAAGGCACCGACGTGAACAAGATCCAGAAGCAGGGGTAAGTGGGCGAGG
GGGAGGGAGGGAGAGGCGTGAAATGTGGGACTGATGGGTTGCGCCTTTTT
GTCTTTTTATTTTTATCACAGGCAACAAAATTAAGGCCTGCAAGGGTGAG
GAAGAGGGGGAAAAGAGGTGTGTGGAGAGAGGGAGAGAGGGCGCTTGCCC
ACTATCTGAGATGCTTTAAAAGAAAAAGAATTGGACGAGAAACATCTCTC
TCTCTCTCTCTCTCACGTTCTCCAGTCGCATGCGTCAGATCGTGGTGCGG
CTGTTGCCCTTGTGTGCAGGGTTTCCACTGTATTTATTTGATTTACCTTC
ATAGCCGTCGTCTAAGTCTTCTTCATGGACATCACATTCTTCTTCCTCTT
GCTGTACTTATCTTTCTGTTCGTGGCCATCGAGATGGTGGTGATCATGAT
AGTGATCTGCTTGACATGGATACCGTGTGAGGATCTTCATAATCGGCATA
AACACATAATAACAATCGTGTTGATTATTATGACCTGCTTCTCTTCTGAA
TCATCGTGACAATGATGATAATTATCATCTGCTTCTCTTCTGGATCATCA
TAGCATCTGCTTGTCATCTTACATCCAAAGCATCTGCTTGGGTCAAATTA
CATTATATTTTGGGAGCAGTCAGCTTTTCCGGCATATCCTGCATTACAGA
GAAGGGAGGAGGGGAGAGGGAGGGAGAGAGGGAGGAAGAGGAGCGAGGGA
CGAATGTCAAATGAGAATGTCCCGGGGTCCAGCGGCTCCATTTAAGGGAG
GGAGAGAGGAAGGGAGCCCCCCGACTCCAAGACGTG

protein sequence of jgi.p|Nanoce1779_2|591796

>mRNA_5227-protein ID=mRNA_5227-protein|Name=jgi.p|Nanoce1779_2|591796|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MEEGPPPPPPPPSNEIVDITDKIAKSECFVLNADPKYPWDNLFMGDDRLQ
LRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFD
DAESIEPTQVLELTEEDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYT
ALSKLRLFGTPLQGTDVNKIQKQG*

mRNA from alignment at scaffold_12:773685..776087+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5227 ID=mRNA_5227|Name=jgi.p|Nanoce1779_2|591796|organism=Nannochloropsis oceanica|type=mRNA|length=2403bp|location=Sequence derived from alignment at scaffold_12:773685..776087+ (Nannochloropsis oceanica)
ACAGACGAGCAAACGATGGAAGAAGGTCCACCACCCCCGCCACCCCCGCC
CTCAAACGAGATTGTGGATATAACCGACAAGATTGCCAAGTCGGAGTGTT
TTGTGTTGAACGCGGTAGGTGTGAGAGAGTTCGACAGGGTGTGTCAGGAG
GGCAGGATGGAGACAGAGGGGGCAGGGAGTGAGGTTCTAGGCAAGCTAGT
CGGCATCGTGATGTAAAGGGAGCGGTATAACGACTATAGGACGGGTGTCT
GCATTTGCTTCGGTTCCTTCCATGGTCCTTTTCCGTAAGCGCCGTTATCC
CCACATGCTATCCCTCCTTTCGTCACCCGCCCCCCCTTTCCCTCTCTCTC
TTTTCCTCCTCACCCAAACAATTAGAAAGACGGCATTTCGATCACCTCTA
TATTCATCAGCAGTATGCCGCCGTCCTTACGCGTATGCGTCCCTTCCTCC
CCTCCCTTCCTTTCCACACCCAGGATCCCAAGTACCCGTGGGACAACCTA
TTTATGGGCGATGATCGTCTTCAGCTCCGATCTGATACCGACGAGCAATT
GGTGTTGCATTTGGTGTTTTCTGAATCAGTGAAAGTGCATAGCATGAATC
TTGTCGCGCCAGAGCCAGGTACATTGGATGGGTATGCGTGAGGGATTGTC
GCCTCATGTATCATAACTGACCTCTTTCCTCCCTTTCTCATCACACGCCC
GCCCGCCATTCCCCCCCCCCCCCACCCATCCACCCCCCCAAATCCCTACC
CCCCCACCCCCCCACCCACATACATATATACACATATACATACAGACGCG
GCCCCTACCACGGTAAAGCTGTACTTGAATAAGACCTCCTTCTCCTTCGA
TGACGCCGAGAGTATCGAGCCCACGCAGGTACTGGAGCTGACCGAGGAGG
ATCACAAGCCCGACAAGGTATATATATAAAGGAGGGAGGGAGGGAGGGAG
GGAAGGAGGTTTAGGACTTTGGCTACTTGAACGAAAATGGATGTCCGGAA
TCATTTTTCATTTGAAAGAAGCGTCGTGGACTGGATGGCATTGACCCCTA
CCTCCCTCCCTCCCTCCCGCGAGTGCAGGTGACGCTGCTGAAATTCGTCA
AGTTCCAGCGCGTCTCCTCACTGACCATATTCATCGAGAGCAACGGGGGC
GCTGAATACACAGCTCTATCCAAGCTTCGATTGTTTGGCACGCCGCTGCA
AGGCACCGACGTGAACAAGATCCAGAAGCAGGGGTAAGTGGGCGAGGGGG
AGGGAGGGAGAGGCGTGAAATGTGGGACTGATGGGTTGCGCCTTTTTGTC
TTTTTATTTTTATCACAGGCAACAAAATTAAGGCCTGCAAGGGTGAGGAA
GAGGGGGAAAAGAGGTGTGTGGAGAGAGGGAGAGAGGGCGCTTGCCCACT
ATCTGAGATGCTTTAAAAGAAAAAGAATTGGACGAGAAACATCTCTCTCT
CTCTCTCTCTCACGTTCTCCAGTCGCATGCGTCAGATCGTGGTGCGGCTG
TTGCCCTTGTGTGCAGGGTTTCCACTGTATTTATTTGATTTACCTTCATA
GCCGTCGTCTAAGTCTTCTTCATGGACATCACATTCTTCTTCCTCTTGCT
GTACTTATCTTTCTGTTCGTGGCCATCGAGATGGTGGTGATCATGATAGT
GATCTGCTTGACATGGATACCGTGTGAGGATCTTCATAATCGGCATAAAC
ACATAATAACAATCGTGTTGATTATTATGACCTGCTTCTCTTCTGAATCA
TCGTGACAATGATGATAATTATCATCTGCTTCTCTTCTGGATCATCATAG
CATCTGCTTGTCATCTTACATCCAAAGCATCTGCTTGGGTCAAATTACAT
TATATTTTGGGAGCAGTCAGCTTTTCCGGCATATCCTGCATTACAGAGAA
GGGAGGAGGGGAGAGGGAGGGAGAGAGGGAGGAAGAGGAGCGAGGGACGA
ATGTCAAATGAGAATGTCCCGGGGTCCAGCGGCTCCATTTAAGGGAGGGA
GAGAGGAAGGGAGGGAGAAGGGCAGGGAGGAAGGACAGAGAATATGGTTT
CTATCGTCAGCATCTTTTAACGTTGCATTCCCTCCCTCCTTCCCTCCGTC
CCTCCCTCCCTCCCTCCCTCAAGCCGTGCCTGGGCGACGGCGCGTCTCGA
GTCGTCCCCTGAGCTCCAATTTTCATAATCTTTGGCCAAGATCTGACACA
CAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGCAATGGACCT
GTTAGTCTTGCATTGATTTCGCATCATCCTTCCGTCGGTCCGTCGGTCCG
TCCGTCCGTCCCTCCCTCCCTCCCTCCCTACCTTGACAAACCGAGGCACC
ATCACCTTAAGCACGCCCTTGATGACCAGAGAGCCCCCCGACTCCAAGAC
GTG

Coding sequence (CDS) from alignment at scaffold_12:773685..776087+

>mRNA_5227 ID=mRNA_5227|Name=jgi.p|Nanoce1779_2|591796|organism=Nannochloropsis oceanica|type=CDS|length=2100bp|location=Sequence derived from alignment at scaffold_12:773685..776087+ (Nannochloropsis oceanica)
ATGGAAGAAGGTCCACCACCCCCGCCACCCCCGCCCTCAAACGAGATTGT
GGATATAACCGACAAGATTGCCAAGTCGGAGTGTTTTGTGTTGAACGCGG
ATCCCAAGTACCCGTGGGACAACCTATTTATGGGCGATGATCGTCTTCAG
CTCCGATCTGATACCGACGAGCAATTGGTGTTGCATTTGGTGTTTTCTGA
ATCAGTGAAAGTGCATAGCATGAATCTTGTCGCGCCAGAGCCAGACGCGG
CCCCTACCACGGTAAAGCTGTACTTGAATAAGACCTCCTTCTCCTTCGAT
GACGCCGAGAGTATCGAGCCCACGCAGGTACTGGAGCTGACCGAGGAGGA
TCACAAGCCCGACAAGGTGACGCTGCTGAAATTCGTCAAGTTCCAGCGCG
TCTCCTCACTGACCATATTCATCGAGAGCAACGGGGGCGCTGAATACACA
GCTCTATCCAAGCTTCGATTGTTTGGCACGCCGCTGCAAGGCACCGACGT
GAACAAGATCCAGAAGCAGGGGTAAATGGAAGAAGGTCCACCACCCCCGC
CACCCCCGCCCTCAAACGAGATTGTGGATATAACCGACAAGATTGCCAAG
TCGGAGTGTTTTGTGTTGAACGCGGATCCCAAGTACCCGTGGGACAACCT
ATTTATGGGCGATGATCGTCTTCAGCTCCGATCTGATACCGACGAGCAAT
TGGTGTTGCATTTGGTGTTTTCTGAATCAGTGAAAGTGCATAGCATGAAT
CTTGTCGCGCCAGAGCCAGACGCGGCCCCTACCACGGTAAAGCTGTACTT
GAATAAGACCTCCTTCTCCTTCGATGACGCCGAGAGTATCGAGCCCACGC
AGGTACTGGAGCTGACCGAGGAGGATCACAAGCCCGACAAGGTGACGCTG
CTGAAATTCGTCAAGTTCCAGCGCGTCTCCTCACTGACCATATTCATCGA
GAGCAACGGGGGCGCTGAATACACAGCTCTATCCAAGCTTCGATTGTTTG
GCACGCCGCTGCAAGGCACCGACGTGAACAAGATCCAGAAGCAGGGGTAA
ATGGAAGAAGGTCCACCACCCCCGCCACCCCCGCCCTCAAACGAGATTGT
GGATATAACCGACAAGATTGCCAAGTCGGAGTGTTTTGTGTTGAACGCGG
ATCCCAAGTACCCGTGGGACAACCTATTTATGGGCGATGATCGTCTTCAG
CTCCGATCTGATACCGACGAGCAATTGGTGTTGCATTTGGTGTTTTCTGA
ATCAGTGAAAGTGCATAGCATGAATCTTGTCGCGCCAGAGCCAGACGCGG
CCCCTACCACGGTAAAGCTGTACTTGAATAAGACCTCCTTCTCCTTCGAT
GACGCCGAGAGTATCGAGCCCACGCAGGTACTGGAGCTGACCGAGGAGGA
TCACAAGCCCGACAAGGTGACGCTGCTGAAATTCGTCAAGTTCCAGCGCG
TCTCCTCACTGACCATATTCATCGAGAGCAACGGGGGCGCTGAATACACA
GCTCTATCCAAGCTTCGATTGTTTGGCACGCCGCTGCAAGGCACCGACGT
GAACAAGATCCAGAAGCAGGGGTAAATGGAAGAAGGTCCACCACCCCCGC
CACCCCCGCCCTCAAACGAGATTGTGGATATAACCGACAAGATTGCCAAG
TCGGAGTGTTTTGTGTTGAACGCGGATCCCAAGTACCCGTGGGACAACCT
ATTTATGGGCGATGATCGTCTTCAGCTCCGATCTGATACCGACGAGCAAT
TGGTGTTGCATTTGGTGTTTTCTGAATCAGTGAAAGTGCATAGCATGAAT
CTTGTCGCGCCAGAGCCAGACGCGGCCCCTACCACGGTAAAGCTGTACTT
GAATAAGACCTCCTTCTCCTTCGATGACGCCGAGAGTATCGAGCCCACGC
AGGTACTGGAGCTGACCGAGGAGGATCACAAGCCCGACAAGGTGACGCTG
CTGAAATTCGTCAAGTTCCAGCGCGTCTCCTCACTGACCATATTCATCGA
GAGCAACGGGGGCGCTGAATACACAGCTCTATCCAAGCTTCGATTGTTTG
GCACGCCGCTGCAAGGCACCGACGTGAACAAGATCCAGAAGCAGGGGTAA

Synonyms

Publications