jgi.p|Nanoce1779_2|591785, mRNA_5225 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591785
Unique NamemRNA_5225
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1494
Alignment locationscaffold_12:769715..771461 -

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Properties
Property NameValue
TranscriptId591871
TrackFilteredModels2
ProteinId591785
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:769715..771461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591785gene_5225Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591785mRNA_5225-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5225CDS_5225Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5225 ID=mRNA_5225|Name=jgi.p|Nanoce1779_2|591785|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp
CTCCTCCTCCTCCTCCTCCTCCTATCCTTCAGTTCCTCCTTCCTCTCCTT
CGCTAAAAAGGCGCAACAGCAGTAGCAGTAGCAGCAGCAGCAGTGTTGTC
GACTCGTCTTTGTATGCTATGAAGGTCCTACGCAAGTCCCACCTGGTGGC
AAAGCACCAAATCGATCGCACCCGGGTGGAAAAAGCCATCATGGACAGAG
TCTCTCACCCCTTTATCATGCACATGCACGCGGCCTTCCAATCGGAGAAT
TTTTTGTTTATGATGTTGGAGTACTGTAGGGGGGGCGAGCTCTTGTTCCA
CTTGGCCCGCCGGCGCCGTTTCTCGGAGAGCGCGACTCGATTTTATGCCG
CGGAGTTGGTGCTGGCGTTGGAATACCTGCACCGCCACGACATTGTTTTT
CGGGATTTAAAACCCGAGAACATTTTATTGGACGCAGAAGGTCATTTGCG
ACTGGGGGATTTTGGGCTGGCCAAATGCGGTGTAAGACAGCCGGAAACAG
GGGCGTTGTCCATGTGCGGCACGCCCGAATACATGGCTCCCGAGGTGTTG
GCGCAGCAGCAGTATGGCCAGAGTGTTGATTGGTGGAGCTTGGGCATGCT
GACGTACGAGATGATGACAGGGTACCCCCCTTGGTACACCCGCGACCGCA
AAAAGCTCGTCCGTCGTGTGAAGTTTGCCCCGCTCACCATCCCTTCCTCC
TTCTCACCTTCTCTCGCCTCCTTCATCGAATCCTTGCTCGTCCGGCACCC
TCTGAAACGCCTGGGAGGAAAGGGAGGGACAGGCCAGGTGAAGAGGCATG
CGTTCTTTAAGTTTATCTCATGGGAGGCAGTATTAAGCAAAAAGGTTATC
CCCCCTATTAGGCCCTGTGAGGACGGGGGGAGGAACGACGAGAGGTCCAG
CAGCGTGGGCAGTGGCAGCAGTGCTCAGGCTGGGGGGGGGTTGACATGCA
AGTCCCCTGTGTGCCGGCTCCAGGGCCATCAGAAGGATCTTGATCCTTCT
TCCCCTCGGAGGCTTAATTTCCTCTCGAATTCATACTCCTCTTCTCCCAA
TGGGGTCGCCACCGCCGCAGGCAAGGGAGGGGGAGGGCGTCATCCTCTCA
ACAAGGAGGAGGGGGAAGAGGAGGAGGAGGAGGAGGAAGTGTGCCCTCAT
GAATACATCGGGACGGAGAACTTCGAAAAGGAATTCACCGGCTTGGACGT
GGCGAGTGCATTTGAAGTGCTGGAGCCGCTGTCGCCTCACTCGAATGCCA
TTTTTTCGAATTTCAGCACCGAGCCCACGATCCGGGTATTGAAGTGGAAG
GGAAGGAGGGTGGGAAGGGGGAATGGCCCGCTTGTGAAGAAAGCGAGCGA
GAAGGAGGTTGGTTTGCTCGGGGGAACAGGGAGCGTGGCTGTGGTATCTG
TGAATGATGAGGAAGGAGGGAGGGGCGGAGGACGGTGGGAAGAGATAAGG
GGGCCAAGTGGCGCGTAGGTGAAGAGAAGGAAAAGAGGAAGGGA
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protein sequence of jgi.p|Nanoce1779_2|591785

>mRNA_5225-protein ID=mRNA_5225-protein|Name=jgi.p|Nanoce1779_2|591785|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MKVLRKSHLVAKHQIDRTRVEKAIMDRVSHPFIMHMHAAFQSENFLFMML
EYCRGGELLFHLARRRRFSESATRFYAAELVLALEYLHRHDIVFRDLKPE
NILLDAEGHLRLGDFGLAKCGVRQPETGALSMCGTPEYMAPEVLAQQQYG
QSVDWWSLGMLTYEMMTGYPPWYTRDRKKLVRRVKFAPLTIPSSFSPSLA
SFIESLLVRHPLKRLGGKGGTGQVKRHAFFKFISWEAVLSKKVIPPIRPC
EDGGRNDERSSSVGSGSSAQAGGGLTCKSPVCRLQGHQKDLDPSSPRRLN
FLSNSYSSSPNGVATAAGKGGGGRHPLNKEEGEEEEEEEEVCPHEYIGTE
NFEKEFTGLDVASAFEVLEPLSPHSNAIFSNFSTEPTIRVLKWKGRRVGR
GNGPLVKKASEKEVGLLGGTGSVAVVSVNDEEGGRGGGRWEEIRGPSGA*
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mRNA from alignment at scaffold_12:769715..771461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5225 ID=mRNA_5225|Name=jgi.p|Nanoce1779_2|591785|organism=Nannochloropsis oceanica|type=mRNA|length=1747bp|location=Sequence derived from alignment at scaffold_12:769715..771461- (Nannochloropsis oceanica)
CTCCTCCTCCTCCTCCTCCTCCTATCCTTCAGTTCCTCCTTCCTCTCCTT
CGCTAAAAAGGCGCAACAGCAGTAGCAGTAGCAGCAGCAGCAGTGTTGTC
GACTCGTCTTTGTATGCTATGAAGGTCCTACGCAAGTCCCACCTGGTGGC
AAAGCACCAAATCGATCGCACCCGGGTGGAAAAAGCCATCATGGACAGAG
TCTCTCACCCCTTTATCATGCACATGCACGCGGCCTTCCAATCGGAGAAT
TTTTTGTTTATGATGTTGGAGTACTGTAGGGGGGGCGAGCTCTTGTTCCA
CTTGGCCCGCCGGCGCCGTTTCTCGGAGAGCGCGACTCGATTTTATGCCG
CGGAGTTGGTGCTGGCGTTGGAATACCTGCACCGCCACGACATTGTTTTT
CGGGATTTAAAACCCGAGAACATTTTATTGGACGCAGAAGGTCATTTGCG
ACTGGGGGATTTTGGGCTGGCCAAATGCGGTGTAAGACAGCCGGAAACAG
GGGCGTTGTCCATGTGCGGCACGCCCGAATACATGGCTCCCGAGGTGTTG
GCGCAGCAGCAGTATGGCCAGAGTGTTGATTGGTGGAGCTTGGGCATGCT
GACGTACGAGATGATGACAGGGTACCCCCCTTGGTAAGTCCGTGGGCCCT
CCCTCCCTCCGTCCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCTT
GCTAGGGCAGTGTGCGTAATGGTGGAGGAGACTCTCAGCCCCGTCTCCCA
TACTGGTTAAGACGCAAGCCATGACTTGACTCTTCCTCTCTTTTGTCTTT
CATTGTCTCCTTCCCCTTTCTCCCTTCCACAAAATTCGTACTCAACCTTC
CTCCCTCCCTCCCTCCTCCCTCTCTCGCTCGCTCAGGTACACCCGCGACC
GCAAAAAGCTCGTCCGTCGTGTGAAGTTTGCCCCGCTCACCATCCCTTCC
TCCTTCTCACCTTCTCTCGCCTCCTTCATCGAATCCTTGCTCGTCCGGCA
CCCTCTGAAACGCCTGGGAGGAAAGGGAGGGACAGGCCAGGTGAAGAGGC
ATGCGTTCTTTAAGTTTATCTCATGGGAGGCAGTATTAAGCAAAAAGGTT
ATCCCCCCTATTAGGCCCTGTGAGGACGGGGGGAGGAACGACGAGAGGTC
CAGCAGCGTGGGCAGTGGCAGCAGTGCTCAGGCTGGGGGGGGGTTGACAT
GCAAGTCCCCTGTGTGCCGGCTCCAGGGCCATCAGAAGGATCTTGATCCT
TCTTCCCCTCGGAGGCTTAATTTCCTCTCGAATTCATACTCCTCTTCTCC
CAATGGGGTCGCCACCGCCGCAGGCAAGGGAGGGGGAGGGCGTCATCCTC
TCAACAAGGAGGAGGGGGAAGAGGAGGAGGAGGAGGAGGAAGTGTGCCCT
CATGAATACATCGGGACGGAGAACTTCGAAAAGGAATTCACCGGCTTGGA
CGTGGCGAGTGCATTTGAAGTGCTGGAGCCGCTGTCGCCTCACTCGAATG
CCATTTTTTCGAATTTCAGCACCGAGCCCACGATCCGGGTATTGAAGTGG
AAGGGAAGGAGGGTGGGAAGGGGGAATGGCCCGCTTGTGAAGAAAGCGAG
CGAGAAGGAGGTTGGTTTGCTCGGGGGAACAGGGAGCGTGGCTGTGGTAT
CTGTGAATGATGAGGAAGGAGGGAGGGGCGGAGGACGGTGGGAAGAGATA
AGGGGGCCAAGTGGCGCGTAGGTGAAGAGAAGGAAAAGAGGAAGGGA
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Coding sequence (CDS) from alignment at scaffold_12:769715..771461-

>mRNA_5225 ID=mRNA_5225|Name=jgi.p|Nanoce1779_2|591785|organism=Nannochloropsis oceanica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_12:769715..771461- (Nannochloropsis oceanica)
GTACACCCGCGACCGCAAAAAGCTCGTCCGTCGTGTGAAGTTTGCCCCGC
TCACCATCCCTTCCTCCTTCTCACCTTCTCTCGCCTCCTTCATCGAATCC
TTGCTCGTCCGGCACCCTCTGAAACGCCTGGGAGGAAAGGGAGGGACAGG
CCAGGTGAAGAGGCATGCGTTCTTTAAGTTTATCTCATGGGAGGCAGTAT
TAAGCAAAAAGGTTATCCCCCCTATTAGGCCCTGTGAGGACGGGGGGAGG
AACGACGAGAGGTCCAGCAGCGTGGGCAGTGGCAGCAGTGCTCAGGCTGG
GGGGGGGTTGACATGCAAGTCCCCTGTGTGCCGGCTCCAGGGCCATCAGA
AGGATCTTGATCCTTCTTCCCCTCGGAGGCTTAATTTCCTCTCGAATTCA
TACTCCTCTTCTCCCAATGGGGTCGCCACCGCCGCAGGCAAGGGAGGGGG
AGGGCGTCATCCTCTCAACAAGGAGGAGGGGGAAGAGGAGGAGGAGGAGG
AGGAAGTGTGCCCTCATGAATACATCGGGACGGAGAACTTCGAAAAGGAA
TTCACCGGCTTGGACGTGGCGAGTGCATTTGAAGTGCTGGAGCCGCTGTC
GCCTCACTCGAATGCCATTTTTTCGAATTTCAGCACCGAGCCCACGATCC
GGGTATTGAAGTGGAAGGGAAGGAGGGTGGGAAGGGGGAATGGCCCGCTT
GTGAAGAAAGCGAGCGAGAAGGAGGTTGGTTTGCTCGGGGGAACAGGGAG
CGTGGCTGTGGTATCTGTGAATGATGAGGAAGGAGGGAGGGGCGGAGGAC
GGTGGGAAGAGATAAGGGGGCCAAGTGGCGCGTAGATGAAGGTCCTACGC
AAGTCCCACCTGGTGGCAAAGCACCAAATCGATCGCACCCGGGTGGAAAA
AGCCATCATGGACAGAGTCTCTCACCCCTTTATCATGCACATGCACGCGG
CCTTCCAATCGGAGAATTTTTTGTTTATGATGTTGGAGTACTGTAGGGGG
GGCGAGCTCTTGTTCCACTTGGCCCGCCGGCGCCGTTTCTCGGAGAGCGC
GACTCGATTTTATGCCGCGGAGTTGGTGCTGGCGTTGGAATACCTGCACC
GCCACGACATTGTTTTTCGGGATTTAAAACCCGAGAACATTTTATTGGAC
GCAGAAGGTCATTTGCGACTGGGGGATTTTGGGCTGGCCAAATGCGGTGT
AAGACAGCCGGAAACAGGGGCGTTGTCCATGTGCGGCACGCCCGAATACA
TGGCTCCCGAGGTGTTGGCGCAGCAGCAGTATGGCCAGAGTGTTGATTGG
TGGAGCTTGGGCATGCTGACGTACGAGATGATGACAGGGTACCCCCCTTG
GTACACCCGCGACCGCAAAAAGCTCGTCCGTCGTGTGAAGTTTGCCCCGC
TCACCATCCCTTCCTCCTTCTCACCTTCTCTCGCCTCCTTCATCGAATCC
TTGCTCGTCCGGCACCCTCTGAAACGCCTGGGAGGAAAGGGAGGGACAGG
CCAGGTGAAGAGGCATGCGTTCTTTAAGTTTATCTCATGGGAGGCAGTAT
TAAGCAAAAAGGTTATCCCCCCTATTAGGCCCTGTGAGGACGGGGGGAGG
AACGACGAGAGGTCCAGCAGCGTGGGCAGTGGCAGCAGTGCTCAGGCTGG
GGGGGGGTTGACATGCAAGTCCCCTGTGTGCCGGCTCCAGGGCCATCAGA
AGGATCTTGATCCTTCTTCCCCTCGGAGGCTTAATTTCCTCTCGAATTCA
TACTCCTCTTCTCCCAATGGGGTCGCCACCGCCGCAGGCAAGGGAGGGGG
AGGGCGTCATCCTCTCAACAAGGAGGAGGGGGAAGAGGAGGAGGAGGAGG
AGGAAGTGTGCCCTCATGAATACATCGGGACGGAGAACTTCGAAAAGGAA
TTCACCGGCTTGGACGTGGCGAGTGCATTTGAAGTGCTGGAGCCGCTGTC
GCCTCACTCGAATGCCATTTTTTCGAATTTCAGCACCGAGCCCACGATCC
GGGTATTGAAGTGGAAGGGAAGGAGGGTGGGAAGGGGGAATGGCCCGCTT
GTGAAGAAAGCGAGCGAGAAGGAGGTTGGTTTGCTCGGGGGAACAGGGAG
CGTGGCTGTGGTATCTGTGAATGATGAGGAAGGAGGGAGGGGCGGAGGAC
GGTGGGAAGAGATAAGGGGGCCAAGTGGCGCGTAGATGAAGGTCCTACGC
AAGTCCCACCTGGTGGCAAAGCACCAAATCGATCGCACCCGGGTGGAAAA
AGCCATCATGGACAGAGTCTCTCACCCCTTTATCATGCACATGCACGCGG
CCTTCCAATCGGAGAATTTTTTGTTTATGATGTTGGAGTACTGTAGGGGG
GGCGAGCTCTTGTTCCACTTGGCCCGCCGGCGCCGTTTCTCGGAGAGCGC
GACTCGATTTTATGCCGCGGAGTTGGTGCTGGCGTTGGAATACCTGCACC
GCCACGACATTGTTTTTCGGGATTTAAAACCCGAGAACATTTTATTGGAC
GCAGAAGGTCATTTGCGACTGGGGGATTTTGGGCTGGCCAAATGCGGTGT
AAGACAGCCGGAAACAGGGGCGTTGTCCATGTGCGGCACGCCCGAATACA
TGGCTCCCGAGGTGTTGGCGCAGCAGCAGTATGGCCAGAGTGTTGATTGG
TGGAGCTTGGGCATGCTGACGTACGAGATGATGACAGGGTACCCCCCTTG
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Synonyms
Publications