jgi.p|Nanoce1779_2|591777, mRNA_5223 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591777
Unique NamemRNA_5223
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length599
Alignment locationscaffold_12:764638..765390 +

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Properties
Property NameValue
TranscriptId591863
TrackFilteredModels2
ProteinId591777
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:764638..765390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591777gene_5223Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591777mRNA_5223-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5223CDS_5223Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5223 ID=mRNA_5223|Name=jgi.p|Nanoce1779_2|591777|organism=Nannochloropsis oceanica|type=mRNA|length=599bp
TGTTGATGCTGCTGCTGCAGCTGCGGCTACTACTGCTGCTGCTGCTACTA
CTACTACTGCTGTTGCTATTGTTGTTGTTGTTGCTGCTGCTGCTAGTACT
ACTACTTCTATTACCGTTGCTGCTACCGCTGCTGCTATTGCTGCCGCTGT
TTCACACCGTGCGTTTTTGCGTCTCTTCACGTTGACTCGCGTGTGGTGGG
TTGGGAAAGGGAGGTCAAGCGTGACGATGCCGATGACGCTGCGACAAGCA
ACCTCATCCACCTCGTCTCTTTGTGCGATAAGTAAATAAAATAACCTCAG
CCACAACCATCCCATACAAACAAAACATTCGTCCTTCCATACCATGCACA
AACTCGACAATATCATGTGCAAAAGCGTGCTTTTGTTTTTCTTTTGAGGG
GATGAGTGCAACGGACATCTCTCCCCGCTTCTAATCAAAAGTCAAACAGG
AGAATTCTCTCGCCTTCTTTCTTTATCACTTCCCTCCTCACGTCTCCCCA
TCCAACGCTCACCAACTACCACCACACCCAGAGCCCACACACATGGCTTC
TGCTGCGGTGGCGACTAGAGTGCCGGGGATGGACATGGAGATGGACGGC
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protein sequence of jgi.p|Nanoce1779_2|591777

>mRNA_5223-protein ID=mRNA_5223-protein|Name=jgi.p|Nanoce1779_2|591777|organism=Nannochloropsis oceanica|type=polypeptide|length=60bp
MLLLQLRLLLLLLLLLLLLLLLLLLLLLLLVLLLLLPLLLPLLLLLPLFH
TVRFCVSSR*
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mRNA from alignment at scaffold_12:764638..765390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5223 ID=mRNA_5223|Name=jgi.p|Nanoce1779_2|591777|organism=Nannochloropsis oceanica|type=mRNA|length=753bp|location=Sequence derived from alignment at scaffold_12:764638..765390+ (Nannochloropsis oceanica)
TGTTGATGCTGCTGCTGCAGCTGCGGCTACTACTGCTGCTGCTGCTACTA
CTACTACTGCTGTTGCTATTGTTGTTGTTGTTGCTGCTGCTGCTAGTACT
ACTACTTCTATTACCGTTGCTGCTACCGCTGCTGCTATTGCTGCCGCTTG
AGCCCGACGACATGATTAGTAGTGGAGTGTCGTGGAGGGTGTGGAGGTAC
GGGAAAGATGGTGAGTGTGTGAGCAGGTACAAACAAGGACAGAGCAAGAT
AGATCTTCAAAAAAGGGCAGGATTAAATTATAAATGCAACATATTTGTAC
CTGTTTCACACCGTGCGTTTTTGCGTCTCTTCACGTTGACTCGCGTGTGG
TGGGTTGGGAAAGGGAGGTCAAGCGTGACGATGCCGATGACGCTGCGACA
AGCAACCTCATCCACCTCGTCTCTTTGTGCGATAAGTAAATAAAATAACC
TCAGCCACAACCATCCCATACAAACAAAACATTCGTCCTTCCATACCATG
CACAAACTCGACAATATCATGTGCAAAAGCGTGCTTTTGTTTTTCTTTTG
AGGGGATGAGTGCAACGGACATCTCTCCCCGCTTCTAATCAAAAGTCAAA
CAGGAGAATTCTCTCGCCTTCTTTCTTTATCACTTCCCTCCTCACGTCTC
CCCATCCAACGCTCACCAACTACCACCACACCCAGAGCCCACACACATGG
CTTCTGCTGCGGTGGCGACTAGAGTGCCGGGGATGGACATGGAGATGGAC
GGC
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Coding sequence (CDS) from alignment at scaffold_12:764638..765390+

>mRNA_5223 ID=mRNA_5223|Name=jgi.p|Nanoce1779_2|591777|organism=Nannochloropsis oceanica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_12:764638..765390+ (Nannochloropsis oceanica)
ATGCTGCTGCTGCAGCTGCGGCTACTACTGCTGCTGCTGCTACTACTACT
ACTGCTGTTGCTATTGTTGTTGTTGTTGCTGCTGCTGCTAGTACTACTAC
TTCTATTACCGTTGCTGCTACCGCTGCTGCTATTGCTGCCGCTGTTTCAC
ACCGTGCGTTTTTGCGTCTCTTCACGTTGAATGCTGCTGCTGCAGCTGCG
GCTACTACTGCTGCTGCTGCTACTACTACTACTGCTGTTGCTATTGTTGT
TGTTGTTGCTGCTGCTGCTAGTACTACTACTTCTATTACCGTTGCTGCTA
CCGCTGCTGCTATTGCTGCCGCTGTTTCACACCGTGCGTTTTTGCGTCTC
TTCACGTTGA
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Synonyms
Publications