jgi.p|Nanoce1779_2|59233, mRNA_5221 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|59233
Unique NamemRNA_5221
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length649
Alignment locationscaffold_12:760323..760971 +

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Properties
Property NameValue
TranscriptId59319
TrackFilteredModels2
ProteinId59233
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:760323..760971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|59233gene_5221Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|59233mRNA_5221-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5221CDS_5221Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5221 ID=mRNA_5221|Name=jgi.p|Nanoce1779_2|59233|organism=Nannochloropsis oceanica|type=mRNA|length=649bp
GGTTGACGGTGAAAGACACATATCTGAGTGGGGGATGGTTAACTCGCGAT
GGTGATGACGCATAAATTTTGCTTTCATGCCAAGCAACAAAATCAGAGCA
ATGAGGCTAGCAACACCACAATATCAGCAAGTTATTGAATATCATGTCTT
TCGTGGGCGTGCTTTTCATGCTTTTGCGGGTTTATGCAGCTGCTCGTTTG
AACTCACACTTCGGTCAAAGGGTGATACGTGCCGAAAAGCAATTGGAGAC
ATAAAAGTGAAGGCGATGCAAACTAAAGTTAGACCGGGCATCTTTCTTAT
TTTTCTTCGTCTTGCACTTTCTCTTCTTCTTCGTCTGAATCTCCCTCTTT
TCTTCCTGAGTTCGGTATCTTTTCTGATATGGTCATACCTGTGTGGTACT
GCTGCTCGGTTCTGTTCCTTTGTGCACTCACCACCTTTGTCTGCGTGTTT
CTCTCTGTGCCTCTGTCTGAGTGTCAGTCTCTATTTCTGACTCTGCGTCC
ATTTGTTATGTTTGTCTCAGTCCCTGTCTGTCTTCTCCTTTCTGTCTCCA
TCTTTCTGTATCTATGTCTGTGACTGTCTGTTTCAGTTGTACTGCCCTGT
TTCCCGGACTCTCACTATCCGTCCCCTCTTTCTCTCATTCTCCCTCTTT
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protein sequence of jgi.p|Nanoce1779_2|59233

>mRNA_5221-protein ID=mRNA_5221-protein|Name=jgi.p|Nanoce1779_2|59233|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MPSNKIRAMRLATPQYQQVIEYHVFRGRAFHAFAGLCSCSFELTLRSKGD
TCRKAIGDIKVKAMQTKVRPGIFLIFLRLALSLLLRLNLPLFFLSSVSFL
IWSYLCGTAARFCSFVHSPPLSACFSLCLCLSVSLYF*
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mRNA from alignment at scaffold_12:760323..760971+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5221 ID=mRNA_5221|Name=jgi.p|Nanoce1779_2|59233|organism=Nannochloropsis oceanica|type=mRNA|length=649bp|location=Sequence derived from alignment at scaffold_12:760323..760971+ (Nannochloropsis oceanica)
GGTTGACGGTGAAAGACACATATCTGAGTGGGGGATGGTTAACTCGCGAT
GGTGATGACGCATAAATTTTGCTTTCATGCCAAGCAACAAAATCAGAGCA
ATGAGGCTAGCAACACCACAATATCAGCAAGTTATTGAATATCATGTCTT
TCGTGGGCGTGCTTTTCATGCTTTTGCGGGTTTATGCAGCTGCTCGTTTG
AACTCACACTTCGGTCAAAGGGTGATACGTGCCGAAAAGCAATTGGAGAC
ATAAAAGTGAAGGCGATGCAAACTAAAGTTAGACCGGGCATCTTTCTTAT
TTTTCTTCGTCTTGCACTTTCTCTTCTTCTTCGTCTGAATCTCCCTCTTT
TCTTCCTGAGTTCGGTATCTTTTCTGATATGGTCATACCTGTGTGGTACT
GCTGCTCGGTTCTGTTCCTTTGTGCACTCACCACCTTTGTCTGCGTGTTT
CTCTCTGTGCCTCTGTCTGAGTGTCAGTCTCTATTTCTGACTCTGCGTCC
ATTTGTTATGTTTGTCTCAGTCCCTGTCTGTCTTCTCCTTTCTGTCTCCA
TCTTTCTGTATCTATGTCTGTGACTGTCTGTTTCAGTTGTACTGCCCTGT
TTCCCGGACTCTCACTATCCGTCCCCTCTTTCTCTCATTCTCCCTCTTT
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Coding sequence (CDS) from alignment at scaffold_12:760323..760971+

>mRNA_5221 ID=mRNA_5221|Name=jgi.p|Nanoce1779_2|59233|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_12:760323..760971+ (Nannochloropsis oceanica)
ATGCCAAGCAACAAAATCAGAGCAATGAGGCTAGCAACACCACAATATCA
GCAAGTTATTGAATATCATGTCTTTCGTGGGCGTGCTTTTCATGCTTTTG
CGGGTTTATGCAGCTGCTCGTTTGAACTCACACTTCGGTCAAAGGGTGAT
ACGTGCCGAAAAGCAATTGGAGACATAAAAGTGAAGGCGATGCAAACTAA
AGTTAGACCGGGCATCTTTCTTATTTTTCTTCGTCTTGCACTTTCTCTTC
TTCTTCGTCTGAATCTCCCTCTTTTCTTCCTGAGTTCGGTATCTTTTCTG
ATATGGTCATACCTGTGTGGTACTGCTGCTCGGTTCTGTTCCTTTGTGCA
CTCACCACCTTTGTCTGCGTGTTTCTCTCTGTGCCTCTGTCTGAGTGTCA
GTCTCTATTTCTGA
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Synonyms
Publications