jgi.p|Nanoce1779_2|577567, mRNA_522 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577567
Unique Name	mRNA_522
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2224
Alignment location	scaffold_3:1265555..1267778 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577653
Track	FilteredModels2
ProteinId	577567

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1265555..1267778 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577567	gene_522	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577567	mRNA_522-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_522	CDS_522	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1265555..1267778+
coding sequence from alignment at scaffold_3:1265555..1267778+

mRNA sequence

>mRNA_522 ID=mRNA_522|Name=jgi.p|Nanoce1779_2|577567|organism=Nannochloropsis oceanica|type=mRNA|length=2224bp
GGGCGCACTTCGTCGCAGGACGGGTACAAAAAAGAAGAACAAGTACCAAC
TTGGGATCTGCTTCTTAAGCCTGTCAAGAGGTGGGAAGGGAAAAGGGCTG
TGGGTGAGCGCCGTGGGGTCGAATGAGACCAGGCGATGTGCCAGCTATGG
TGTTCAGGTTGGTTGAAGAGGGAGAGAAGCAAAAAAACAGGTCTCCTATG
GGTTGTAAAAGCCGCGCCACACGGCTACCCTTTGAAATTGCATGGAAACA
TCCCTCCCCGTTGGCCTCACGAGATGAGAGACATTGATGTGGTGAATGTT
GTGGTAAAGGTCGAGAAACTTTCAATTGCAGAGCCAGAGGGCACGAAACA
ACGAGGACTTGGACGACTAATCTCTGGGGCAGCTGCTGTTATTCGGGGGG
TCTCGTTCTTTTTGATTGCGAGTGACACACATTGCGTGCAAGGTAGGTGG
CGTGTCGCATCGTCCCGCCGGTTGTATGTCGCTTCCCTTGCGCTTGCAGT
GCCTAGAATGTAATCTCACAATCATCAGAATGAACTATAGGTCTTTCATT
TCCCCAACTTGCCGACCGAACACCCGATTCAGGCGGAACAATTCATGCCC
ACCCCGCACGCTTAAGCACGCACCACACACATACACGTACGCCCCACAGA
ACAACCATGCAGGCCCTCGTCAACCTCGGTCGTCGCGCTGCCACCAGCCT
CGTCCATCCCCCATTCAAGGCTGCTGCTGCAATAAACCGTACAGCTGCAC
TCTCCGACTCCACCTCCTACGCGACCACCGCCCTCCTACGACGACGACTT
TTCCTCTCCACGCCCACGCACACGCTCACCACACTCTTCCAGCCTCTCCG
TCCCTTTTCCTCCGAGCCTGCGGGGTCCTCATCCTACTCGACAATGACCG
CCTTCGACCCCTTTAATCCCACAGAGGAACATAGCCAGCTTCGGGGCATG
ATTCGGGCCTTTGTCGAAAAGGAAGTGGACCCCCAAGCCTTGGCATTCAA
TCGACGGGAAGAATTCAATTTGACTTTGTTTAGGAAGCTGGGTGAACTAG
GTCTGCTGGGGTTGACGGTCTCCGTGGAGTATGGCGGGTCAGGCATGGAT
GCTGCGGCGGTGGCCATTGTGCATGAGGAGATCTCGGCTGCGGACCCAGC
ATTCTGCCTGGCTTACCTTGCCCATTCCTTGTTGTTTGTAAATAATCTGG
CGCAGAATGGGACGTCTGCTCAGAAGCTTAAGTACCTTCCGAAGGCGTGT
TCGGGGGAGGTGGTGGGAGGCATGTGTATGAGTGAGCCGGGAGCGGGGAC
TGATGTGCTAGGGATGAATACAACGGCGGTTAAGTCGCAGGATGGGTCAT
TCTACACGTTGAATGGTGCCAAAATGTGGATTACGAATGGGACGTTAGAC
GGGGAGACAACGGGGGATGTGTATCTGGTTTATGCGAGGACGGGGAAAGG
ACCTAAGGACCTGAGTATGTTTGTGGTGGAGAAGGGGACGGAGGGGTTTG
GGTTGGGGCAGAAGCTGGAGGACAAGCTGGGCATGCGCGCTTCGATGACT
GCAGAGCTGGTTTTTGATGAATGTAGGGTTCCTGTAGAAAATTTGGTGGG
AAAGGAGCATGGGGCGGCGATTTGCATGATGAGGAATTTGGAGATTGAGC
GGGTGGGACTTGCAGCCATGTCGGTTGGCTTGGCCAGGAGATGTGTAGAG
GTGATGAATCGATACGCCAAGGAGAGGAAAGCTTTTGGACAGTCGTTGAA
TGAGTTTGGTCAGGTGCAGAAACATGTGGCGGAGAGCTATGCGGAGTATA
TGGCTGGAAGGACGTACCTTTATTTTGTAGCAAATCACCTGGACTTAGCA
TCCTCGGGGAATGGGCTTGATGCGGATGGAGTAAAACTGTACTGTGCGAA
GATGGGAAAGGAGGTAGCAGATCGGGCGATTCAAGTTTTGGGGGGGTATG
GGTATGTTGGGGAGTATCAAGTGGAGAGGTTGTGGAGGGATGCGAAGTTG
CTGGAGATCGGGGGCGGTACGAGTGAGGCGCATCATAAAAATATGGTGCG
GGACTTGAAAAGGCACCATGAGCGGCTGCTATAATATTGGTGTGGGAAGA
AGGGTGGGGCCGGTGAGGGGGTTCGTAAGGTGGAAAAAAAGGAGGAGGAG
GACGACGACGACGACGACGACGACGATAATGAAACTTGGAGCCTCTCGGG
GTGCGATGGGGAATAGCTGTTCAG

protein sequence of jgi.p|Nanoce1779_2|577567

>mRNA_522-protein ID=mRNA_522-protein|Name=jgi.p|Nanoce1779_2|577567|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MQALVNLGRRAATSLVHPPFKAAAAINRTAALSDSTSYATTALLRRRLFL
STPTHTLTTLFQPLRPFSSEPAGSSSYSTMTAFDPFNPTEEHSQLRGMIR
AFVEKEVDPQALAFNRREEFNLTLFRKLGELGLLGLTVSVEYGGSGMDAA
AVAIVHEEISAADPAFCLAYLAHSLLFVNNLAQNGTSAQKLKYLPKACSG
EVVGGMCMSEPGAGTDVLGMNTTAVKSQDGSFYTLNGAKMWITNGTLDGE
TTGDVYLVYARTGKGPKDLSMFVVEKGTEGFGLGQKLEDKLGMRASMTAE
LVFDECRVPVENLVGKEHGAAICMMRNLEIERVGLAAMSVGLARRCVEVM
NRYAKERKAFGQSLNEFGQVQKHVAESYAEYMAGRTYLYFVANHLDLASS
GNGLDADGVKLYCAKMGKEVADRAIQVLGGYGYVGEYQVERLWRDAKLLE
IGGGTSEAHHKNMVRDLKRHHERLL*

mRNA from alignment at scaffold_3:1265555..1267778+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_522 ID=mRNA_522|Name=jgi.p|Nanoce1779_2|577567|organism=Nannochloropsis oceanica|type=mRNA|length=2224bp|location=Sequence derived from alignment at scaffold_3:1265555..1267778+ (Nannochloropsis oceanica)
GGGCGCACTTCGTCGCAGGACGGGTACAAAAAAGAAGAACAAGTACCAAC
TTGGGATCTGCTTCTTAAGCCTGTCAAGAGGTGGGAAGGGAAAAGGGCTG
TGGGTGAGCGCCGTGGGGTCGAATGAGACCAGGCGATGTGCCAGCTATGG
TGTTCAGGTTGGTTGAAGAGGGAGAGAAGCAAAAAAACAGGTCTCCTATG
GGTTGTAAAAGCCGCGCCACACGGCTACCCTTTGAAATTGCATGGAAACA
TCCCTCCCCGTTGGCCTCACGAGATGAGAGACATTGATGTGGTGAATGTT
GTGGTAAAGGTCGAGAAACTTTCAATTGCAGAGCCAGAGGGCACGAAACA
ACGAGGACTTGGACGACTAATCTCTGGGGCAGCTGCTGTTATTCGGGGGG
TCTCGTTCTTTTTGATTGCGAGTGACACACATTGCGTGCAAGGTAGGTGG
CGTGTCGCATCGTCCCGCCGGTTGTATGTCGCTTCCCTTGCGCTTGCAGT
GCCTAGAATGTAATCTCACAATCATCAGAATGAACTATAGGTCTTTCATT
TCCCCAACTTGCCGACCGAACACCCGATTCAGGCGGAACAATTCATGCCC
ACCCCGCACGCTTAAGCACGCACCACACACATACACGTACGCCCCACAGA
ACAACCATGCAGGCCCTCGTCAACCTCGGTCGTCGCGCTGCCACCAGCCT
CGTCCATCCCCCATTCAAGGCTGCTGCTGCAATAAACCGTACAGCTGCAC
TCTCCGACTCCACCTCCTACGCGACCACCGCCCTCCTACGACGACGACTT
TTCCTCTCCACGCCCACGCACACGCTCACCACACTCTTCCAGCCTCTCCG
TCCCTTTTCCTCCGAGCCTGCGGGGTCCTCATCCTACTCGACAATGACCG
CCTTCGACCCCTTTAATCCCACAGAGGAACATAGCCAGCTTCGGGGCATG
ATTCGGGCCTTTGTCGAAAAGGAAGTGGACCCCCAAGCCTTGGCATTCAA
TCGACGGGAAGAATTCAATTTGACTTTGTTTAGGAAGCTGGGTGAACTAG
GTCTGCTGGGGTTGACGGTCTCCGTGGAGTATGGCGGGTCAGGCATGGAT
GCTGCGGCGGTGGCCATTGTGCATGAGGAGATCTCGGCTGCGGACCCAGC
ATTCTGCCTGGCTTACCTTGCCCATTCCTTGTTGTTTGTAAATAATCTGG
CGCAGAATGGGACGTCTGCTCAGAAGCTTAAGTACCTTCCGAAGGCGTGT
TCGGGGGAGGTGGTGGGAGGCATGTGTATGAGTGAGCCGGGAGCGGGGAC
TGATGTGCTAGGGATGAATACAACGGCGGTTAAGTCGCAGGATGGGTCAT
TCTACACGTTGAATGGTGCCAAAATGTGGATTACGAATGGGACGTTAGAC
GGGGAGACAACGGGGGATGTGTATCTGGTTTATGCGAGGACGGGGAAAGG
ACCTAAGGACCTGAGTATGTTTGTGGTGGAGAAGGGGACGGAGGGGTTTG
GGTTGGGGCAGAAGCTGGAGGACAAGCTGGGCATGCGCGCTTCGATGACT
GCAGAGCTGGTTTTTGATGAATGTAGGGTTCCTGTAGAAAATTTGGTGGG
AAAGGAGCATGGGGCGGCGATTTGCATGATGAGGAATTTGGAGATTGAGC
GGGTGGGACTTGCAGCCATGTCGGTTGGCTTGGCCAGGAGATGTGTAGAG
GTGATGAATCGATACGCCAAGGAGAGGAAAGCTTTTGGACAGTCGTTGAA
TGAGTTTGGTCAGGTGCAGAAACATGTGGCGGAGAGCTATGCGGAGTATA
TGGCTGGAAGGACGTACCTTTATTTTGTAGCAAATCACCTGGACTTAGCA
TCCTCGGGGAATGGGCTTGATGCGGATGGAGTAAAACTGTACTGTGCGAA
GATGGGAAAGGAGGTAGCAGATCGGGCGATTCAAGTTTTGGGGGGGTATG
GGTATGTTGGGGAGTATCAAGTGGAGAGGTTGTGGAGGGATGCGAAGTTG
CTGGAGATCGGGGGCGGTACGAGTGAGGCGCATCATAAAAATATGGTGCG
GGACTTGAAAAGGCACCATGAGCGGCTGCTATAATATTGGTGTGGGAAGA
AGGGTGGGGCCGGTGAGGGGGTTCGTAAGGTGGAAAAAAAGGAGGAGGAG
GACGACGACGACGACGACGACGACGATAATGAAACTTGGAGCCTCTCGGG
GTGCGATGGGGAATAGCTGTTCAG

Coding sequence (CDS) from alignment at scaffold_3:1265555..1267778+

>mRNA_522 ID=mRNA_522|Name=jgi.p|Nanoce1779_2|577567|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_3:1265555..1267778+ (Nannochloropsis oceanica)
ATGCAGGCCCTCGTCAACCTCGGTCGTCGCGCTGCCACCAGCCTCGTCCA
TCCCCCATTCAAGGCTGCTGCTGCAATAAACCGTACAGCTGCACTCTCCG
ACTCCACCTCCTACGCGACCACCGCCCTCCTACGACGACGACTTTTCCTC
TCCACGCCCACGCACACGCTCACCACACTCTTCCAGCCTCTCCGTCCCTT
TTCCTCCGAGCCTGCGGGGTCCTCATCCTACTCGACAATGACCGCCTTCG
ACCCCTTTAATCCCACAGAGGAACATAGCCAGCTTCGGGGCATGATTCGG
GCCTTTGTCGAAAAGGAAGTGGACCCCCAAGCCTTGGCATTCAATCGACG
GGAAGAATTCAATTTGACTTTGTTTAGGAAGCTGGGTGAACTAGGTCTGC
TGGGGTTGACGGTCTCCGTGGAGTATGGCGGGTCAGGCATGGATGCTGCG
GCGGTGGCCATTGTGCATGAGGAGATCTCGGCTGCGGACCCAGCATTCTG
CCTGGCTTACCTTGCCCATTCCTTGTTGTTTGTAAATAATCTGGCGCAGA
ATGGGACGTCTGCTCAGAAGCTTAAGTACCTTCCGAAGGCGTGTTCGGGG
GAGGTGGTGGGAGGCATGTGTATGAGTGAGCCGGGAGCGGGGACTGATGT
GCTAGGGATGAATACAACGGCGGTTAAGTCGCAGGATGGGTCATTCTACA
CGTTGAATGGTGCCAAAATGTGGATTACGAATGGGACGTTAGACGGGGAG
ACAACGGGGGATGTGTATCTGGTTTATGCGAGGACGGGGAAAGGACCTAA
GGACCTGAGTATGTTTGTGGTGGAGAAGGGGACGGAGGGGTTTGGGTTGG
GGCAGAAGCTGGAGGACAAGCTGGGCATGCGCGCTTCGATGACTGCAGAG
CTGGTTTTTGATGAATGTAGGGTTCCTGTAGAAAATTTGGTGGGAAAGGA
GCATGGGGCGGCGATTTGCATGATGAGGAATTTGGAGATTGAGCGGGTGG
GACTTGCAGCCATGTCGGTTGGCTTGGCCAGGAGATGTGTAGAGGTGATG
AATCGATACGCCAAGGAGAGGAAAGCTTTTGGACAGTCGTTGAATGAGTT
TGGTCAGGTGCAGAAACATGTGGCGGAGAGCTATGCGGAGTATATGGCTG
GAAGGACGTACCTTTATTTTGTAGCAAATCACCTGGACTTAGCATCCTCG
GGGAATGGGCTTGATGCGGATGGAGTAAAACTGTACTGTGCGAAGATGGG
AAAGGAGGTAGCAGATCGGGCGATTCAAGTTTTGGGGGGGTATGGGTATG
TTGGGGAGTATCAAGTGGAGAGGTTGTGGAGGGATGCGAAGTTGCTGGAG
ATCGGGGGCGGTACGAGTGAGGCGCATCATAAAAATATGGTGCGGGACTT
GAAAAGGCACCATGAGCGGCTGCTATAA

Synonyms

Publications