jgi.p|Nanoce1779_2|566462, mRNA_5219 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566462
Unique NamemRNA_5219
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length654
Alignment locationscaffold_12:755031..755684 -

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Properties
Property NameValue
TranscriptId566548
TrackFilteredModels2
ProteinId566462
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:755031..755684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566462gene_5219Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5219CDS_5219Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566462mRNA_5219-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5219 ID=mRNA_5219|Name=jgi.p|Nanoce1779_2|566462|organism=Nannochloropsis oceanica|type=mRNA|length=654bp
ATGCTTGGACGCCTGTCACGGTGGCTCCGCGTGTTGGGCGTAGACGTTGA
ACTCCACGACTTCGACTTGCCCTCCATCCTTTCCCACAAGGGGGCCAGCA
GCCTGACCAACACGTGCAAGACCATTGTCCCTGCGCTTGTGGGGACTCCG
CCTCCGATTCTGGCAAAGGCCCACCGGACAGGGAGGGTTGTGTTGACGCG
AGACAAGCGGCTGGCGGAGAGCAGGCATAACACTTTATTGGGGGTGAGGA
CGTTCTTGATTAAGGGAAATGATACCCGACAGCAATTAGAGCAGGTGGTA
AGGTGGTTTGGGATTCGACTGGATGCGGATGAGCTGATGAGTCGATGCTC
TGGGTGTAATGCCAAGGGGTATGTGGCATTGACATCTGAGGAGATTGCGG
CGAGGAAGGACATACCGGAGAGGGTGAAGGAAAATGTGGAGACGTTCTGG
ACGTGTGTGAATGAGGGTTGTAAGAAGCTGTATTGGAAGGGGGAGATGTG
GAATAAAGCGAGTTCGAAATTCTCGACCATGATTGAGGAAATGAAGAGGA
GGGACTGGGAGATAGGGCGGGAAGGGGGAGGGAGGGAGGAGGAGGGCGAG
GAGGACGACGACGAGGACGACGACGAGGACGACGACGAGGACGAGGAGGT
GTAA
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protein sequence of jgi.p|Nanoce1779_2|566462

>mRNA_5219-protein ID=mRNA_5219-protein|Name=jgi.p|Nanoce1779_2|566462|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MLGRLSRWLRVLGVDVELHDFDLPSILSHKGASSLTNTCKTIVPALVGTP
PPILAKAHRTGRVVLTRDKRLAESRHNTLLGVRTFLIKGNDTRQQLEQVV
RWFGIRLDADELMSRCSGCNAKGYVALTSEEIAARKDIPERVKENVETFW
TCVNEGCKKLYWKGEMWNKASSKFSTMIEEMKRRDWEIGREGGGREEEGE
EDDDEDDDEDDDEDEEV*
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mRNA from alignment at scaffold_12:755031..755684-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5219 ID=mRNA_5219|Name=jgi.p|Nanoce1779_2|566462|organism=Nannochloropsis oceanica|type=mRNA|length=654bp|location=Sequence derived from alignment at scaffold_12:755031..755684- (Nannochloropsis oceanica)
ATGCTTGGACGCCTGTCACGGTGGCTCCGCGTGTTGGGCGTAGACGTTGA
ACTCCACGACTTCGACTTGCCCTCCATCCTTTCCCACAAGGGGGCCAGCA
GCCTGACCAACACGTGCAAGACCATTGTCCCTGCGCTTGTGGGGACTCCG
CCTCCGATTCTGGCAAAGGCCCACCGGACAGGGAGGGTTGTGTTGACGCG
AGACAAGCGGCTGGCGGAGAGCAGGCATAACACTTTATTGGGGGTGAGGA
CGTTCTTGATTAAGGGAAATGATACCCGACAGCAATTAGAGCAGGTGGTA
AGGTGGTTTGGGATTCGACTGGATGCGGATGAGCTGATGAGTCGATGCTC
TGGGTGTAATGCCAAGGGGTATGTGGCATTGACATCTGAGGAGATTGCGG
CGAGGAAGGACATACCGGAGAGGGTGAAGGAAAATGTGGAGACGTTCTGG
ACGTGTGTGAATGAGGGTTGTAAGAAGCTGTATTGGAAGGGGGAGATGTG
GAATAAAGCGAGTTCGAAATTCTCGACCATGATTGAGGAAATGAAGAGGA
GGGACTGGGAGATAGGGCGGGAAGGGGGAGGGAGGGAGGAGGAGGGCGAG
GAGGACGACGACGAGGACGACGACGAGGACGACGACGAGGACGAGGAGGT
GTAA
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Coding sequence (CDS) from alignment at scaffold_12:755031..755684-

>mRNA_5219 ID=mRNA_5219|Name=jgi.p|Nanoce1779_2|566462|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_12:755031..755684- (Nannochloropsis oceanica)
ATGCTTGGACGCCTGTCACGGTGGCTCCGCGTGTTGGGCGTAGACGTTGA
ACTCCACGACTTCGACTTGCCCTCCATCCTTTCCCACAAGGGGGCCAGCA
GCCTGACCAACACGTGCAAGACCATTGTCCCTGCGCTTGTGGGGACTCCG
CCTCCGATTCTGGCAAAGGCCCACCGGACAGGGAGGGTTGTGTTGACGCG
AGACAAGCGGCTGGCGGAGAGCAGGCATAACACTTTATTGGGGGTGAGGA
CGTTCTTGATTAAGGGAAATGATACCCGACAGCAATTAGAGCAGGTGGTA
AGGTGGTTTGGGATTCGACTGGATGCGGATGAGCTGATGAGTCGATGCTC
TGGGTGTAATGCCAAGGGGTATGTGGCATTGACATCTGAGGAGATTGCGG
CGAGGAAGGACATACCGGAGAGGGTGAAGGAAAATGTGGAGACGTTCTGG
ACGTGTGTGAATGAGGGTTGTAAGAAGCTGTATTGGAAGGGGGAGATGTG
GAATAAAGCGAGTTCGAAATTCTCGACCATGATTGAGGAAATGAAGAGGA
GGGACTGGGAGATAGGGCGGGAAGGGGGAGGGAGGGAGGAGGAGGGCGAG
GAGGACGACGACGAGGACGACGACGAGGACGACGACGAGGACGAGGAGGT
GTAA
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Synonyms
Publications