jgi.p|Nanoce1779_2|591767, mRNA_5218 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591767
Unique NamemRNA_5218
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length388
Alignment locationscaffold_12:754697..755084 +

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Properties
Property NameValue
TranscriptId591853
TrackFilteredModels2
ProteinId591767
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:754697..755084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591767gene_5218Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591767mRNA_5218-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5218CDS_5218Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5218 ID=mRNA_5218|Name=jgi.p|Nanoce1779_2|591767|organism=Nannochloropsis oceanica|type=mRNA|length=388bp
CGTGTGTATATTTGTATGTCTGCATGGCTTCATGCCCTCCCCCCCCTTCT
TCTTCTCCTTCTTCATCATCATCATCTTCTTTGATTTTAATTATTGCATG
TCACCCCTGTGGCAGTGTCTGTTCGATTTTTCCTATTACATTGTATGCGC
TCACATTCTCGCAGGCTATGGGTCCTTCCTTTACTCCTTCCCCTTCCTCC
ATTCCTGTGTCCGCACAGCCTCACACCGTACAGTGTGAGTCCCTACCTGC
CTCTACACAGCATCTCATTACTGTACACAAAGTGTTTATATTCCCCATTC
CCTTTCCTTTCTTTCCAATTAAGATGGAGCATCATTACACCTCCTCGTCC
TCGTCGTCGTCCTCGTCGTCGTCCTCGTCGTCGTCCTC
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protein sequence of jgi.p|Nanoce1779_2|591767

>mRNA_5218-protein ID=mRNA_5218-protein|Name=jgi.p|Nanoce1779_2|591767|organism=Nannochloropsis oceanica|type=polypeptide|length=69bp
MPSPPFFFSFFIIIIFFDFNYCMSPLWQCLFDFSYYIVCAHILAGYGSFL
YSFPFLHSCVRTASHRTV*
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mRNA from alignment at scaffold_12:754697..755084+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5218 ID=mRNA_5218|Name=jgi.p|Nanoce1779_2|591767|organism=Nannochloropsis oceanica|type=mRNA|length=388bp|location=Sequence derived from alignment at scaffold_12:754697..755084+ (Nannochloropsis oceanica)
CGTGTGTATATTTGTATGTCTGCATGGCTTCATGCCCTCCCCCCCCTTCT
TCTTCTCCTTCTTCATCATCATCATCTTCTTTGATTTTAATTATTGCATG
TCACCCCTGTGGCAGTGTCTGTTCGATTTTTCCTATTACATTGTATGCGC
TCACATTCTCGCAGGCTATGGGTCCTTCCTTTACTCCTTCCCCTTCCTCC
ATTCCTGTGTCCGCACAGCCTCACACCGTACAGTGTGAGTCCCTACCTGC
CTCTACACAGCATCTCATTACTGTACACAAAGTGTTTATATTCCCCATTC
CCTTTCCTTTCTTTCCAATTAAGATGGAGCATCATTACACCTCCTCGTCC
TCGTCGTCGTCCTCGTCGTCGTCCTCGTCGTCGTCCTC
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Coding sequence (CDS) from alignment at scaffold_12:754697..755084+

>mRNA_5218 ID=mRNA_5218|Name=jgi.p|Nanoce1779_2|591767|organism=Nannochloropsis oceanica|type=CDS|length=207bp|location=Sequence derived from alignment at scaffold_12:754697..755084+ (Nannochloropsis oceanica)
ATGCCCTCCCCCCCCTTCTTCTTCTCCTTCTTCATCATCATCATCTTCTT
TGATTTTAATTATTGCATGTCACCCCTGTGGCAGTGTCTGTTCGATTTTT
CCTATTACATTGTATGCGCTCACATTCTCGCAGGCTATGGGTCCTTCCTT
TACTCCTTCCCCTTCCTCCATTCCTGTGTCCGCACAGCCTCACACCGTAC
AGTGTGA
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Synonyms
Publications