jgi.p|Nanoce1779_2|58793, mRNA_5217 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|58793
Unique Name	mRNA_5217
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2355
Alignment location	scaffold_12:752201..754555 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	58879
Track	FilteredModels2
ProteinId	58793

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:752201..754555 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|58793	gene_5217	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|58793	mRNA_5217-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5217	CDS_5217	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:752201..754555+
coding sequence from alignment at scaffold_12:752201..754555+

mRNA sequence

>mRNA_5217 ID=mRNA_5217|Name=jgi.p|Nanoce1779_2|58793|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp
CAATGGGAAGGGAAGGAAAAGAAGGGGTTTAGGACGGCGGCAAACAGCGA
GCAAACATGTCTTGTTGGTAACTTGGGCGACAGAGTGCAGGCCTGCTCTG
GCTCTCCAGTTTATCCGCCTTACTATGCTTCTACCACGATGTCATACTTA
ACCCCACAGGAGGCTTGCGTCGACAAGTCACTTGCGTTGCGTCACCTACG
GCTCTCGCGTACGCTCCCAGCAATAAATAAATAAAAACCTATTAATAAAT
TTGCCGAGGAAGATACGTGTAGGATAAATCAAACGCGCATGTCTGCGCAT
GCTTGGAGAGTGTAGACAAATTCTCATCAGGGATATGCAGGTTGATGAGT
TGGAGAAGGTTGCTATACTTACCCCCTGCCAAGTCACCCAATATTGGACT
CTCATTCATCTCCATCGGCACACTACAAACGCTGACTCCTATTCCACCCC
ATGAACTCAGGTATGACCCCTTCATGCACCACTTCGAGTAGCTCGGCAAC
GTCCACGCGCAAGGCCGAGTTTATTTCGGTTCGCAAGTCCCTCGTCCAAC
CCGCCACACCCCCTCCTTCCAGCCAACCCCCTCAAGTGCCCCTCGCAGGC
TGCGATATGATTTACGATCACTTTCAAATTAAGGCCGCTTTCTTCTTTAC
CGAGATCCTGAACCCCCCGTTGCTGAAAGCAAGCCTGGCTAAGGCCTTGG
ATGCATATCCGCTGCTTGCGGGCCGCGCACGGAAATCAGGTAGCAGTGCT
GCGTGGATTGATTGTTGTGGATCAGGCGTGGAGGTCGTTGAGCAAGTGGC
GCGTGTGACGGGCACGGACGGATTGGTACACGGATATACAAATGAATTCA
TGGATTCGTTTGCTCGAGGGGCGTTCATGACGAAAGCGAACGACAAGAGC
TCCCCTCTAATGACTGTGACACTGACGGAGGTGACGTACGGAGAAAGCTT
GTCCTGTCGTTACCGGGGTATCTCGGCCTTTTCCTGTCGCTGCGCGGGGG
AGGGAGACGAGGACGAAATAGAGGAGAGAAGAGAGGAATCAGCAGGAGCA
GCAGCGTCCCCGCCCGTGCCTGATACCGCAAGCCGCATGGTCAGGACCAA
CGCCAGCAGCACCTCTCCCCCACCCCAATTTAACCCACCCTCCACCAGCC
TTCCCCCCATACCTTCCCGCACCGTCCCTTCACCCGGCGCTATCTCTCCC
CCAACCATTCGATACGCCATCGGTCTCTCCTGCTCCCATTCCGCCGCGGA
CGGGTGTGCGATTTCTGCCTTTCTGGGCACATGGGTCAGAGCGGGAGCCA
ACCTGCCTATGCAACACTCTATCCACACCCGAGGTCCCCTCCTAAACCAT
GGGCCTTTGGACGACGAGCGTCAGCCATCCCCTGCTAAATATCGCCTTCT
TTCGCCCCTGGGCAAGGCCATGTTGATGTGGCGTTTTGCGTGGCACCAGA
TTGGGTGCGAGGTGGCCATTTTGAGGTTTGACAGGGAGGAAGTGGAGGAG
GTGAAGAGACAGGCAATGAAACGCTTGCATGGAAGTGAGCAATGGGTCTC
GACGAGCAATGCCCTGGCGGCCCATCTGTGGCCAATTATGTCGGATTTAT
TGACTGGAGCACGAAAGGGAGGGCGGGGGGAAGGGACGGGTCTGTTGGTG
CCCATGAGTGTGGTGGTAAACAGTAGGAAGCAACTGGGCTTGCCGACGCA
TTATTGCGGAAACGTAGTGTCGATCCAGGACGTACCCGACGGGAAGACCG
AAGATGACCTCACAGCCCGTGCCCTTAAAGTCCGTTATGCGTCAGCGGCC
TCTGAGGAGGAAGCGCGACGCGATCATTCTTATATGCAGAGGGTAGGGAC
TCGAGGCCAGGGAGACTCTCTTTCGTACAAGCGAATGGCGGACATGATCA
TGGGCAAGCCAGGGCTGCTCTGGGACGATATTTCAAGTTTTTCGAGCGGT
GCCATGGCTCACTTGAGATTTGGGGGCGCCTCACCCGTTGGAGCAGACCT
CTCCGCGCTCTCCATTCCGGGAATGATGTTTGTCGTGGCCCCTCCGCTAG
GGCAGGAGGGAGGAGGGGAGGGAGGGAAGGAGGTGAGGGTGGCGTTGCCA
AAGAAATTAGCGCGGAAGTTGAGGAGCAGTGAGTGGCAGGGGAGGGTTCA
TAAATTTAGGCGGTGGCCCACGGCGAGGGCGTCGCCGGCTTTGATACCTG
CCGAGGGGGAGGGAGGGGGAGAGGGAGAGGAAAAGACAAAAGTGGAAGGT
GGGATTTTGGGACTTGAGGAGGATGGGAAGGACTCACATAAGAGATCGGA
GGAAGGGGAACCGACAATGATGAAGGAGAAGGTTTGGGGGCTGTAGCGTT
TTGTG

protein sequence of jgi.p|Nanoce1779_2|58793

>mRNA_5217-protein ID=mRNA_5217-protein|Name=jgi.p|Nanoce1779_2|58793|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MNSGMTPSCTTSSSSATSTRKAEFISVRKSLVQPATPPPSSQPPQVPLAG
CDMIYDHFQIKAAFFFTEILNPPLLKASLAKALDAYPLLAGRARKSGSSA
AWIDCCGSGVEVVEQVARVTGTDGLVHGYTNEFMDSFARGAFMTKANDKS
SPLMTVTLTEVTYGESLSCRYRGISAFSCRCAGEGDEDEIEERREESAGA
AASPPVPDTASRMVRTNASSTSPPPQFNPPSTSLPPIPSRTVPSPGAISP
PTIRYAIGLSCSHSAADGCAISAFLGTWVRAGANLPMQHSIHTRGPLLNH
GPLDDERQPSPAKYRLLSPLGKAMLMWRFAWHQIGCEVAILRFDREEVEE
VKRQAMKRLHGSEQWVSTSNALAAHLWPIMSDLLTGARKGGRGEGTGLLV
PMSVVVNSRKQLGLPTHYCGNVVSIQDVPDGKTEDDLTARALKVRYASAA
SEEEARRDHSYMQRVGTRGQGDSLSYKRMADMIMGKPGLLWDDISSFSSG
AMAHLRFGGASPVGADLSALSIPGMMFVVAPPLGQEGGGEGGKEVRVALP
KKLARKLRSSEWQGRVHKFRRWPTARASPALIPAEGEGGGEGEEKTKVEG
GILGLEEDGKDSHKRSEEGEPTMMKEKVWGL*

mRNA from alignment at scaffold_12:752201..754555+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5217 ID=mRNA_5217|Name=jgi.p|Nanoce1779_2|58793|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp|location=Sequence derived from alignment at scaffold_12:752201..754555+ (Nannochloropsis oceanica)
CAATGGGAAGGGAAGGAAAAGAAGGGGTTTAGGACGGCGGCAAACAGCGA
GCAAACATGTCTTGTTGGTAACTTGGGCGACAGAGTGCAGGCCTGCTCTG
GCTCTCCAGTTTATCCGCCTTACTATGCTTCTACCACGATGTCATACTTA
ACCCCACAGGAGGCTTGCGTCGACAAGTCACTTGCGTTGCGTCACCTACG
GCTCTCGCGTACGCTCCCAGCAATAAATAAATAAAAACCTATTAATAAAT
TTGCCGAGGAAGATACGTGTAGGATAAATCAAACGCGCATGTCTGCGCAT
GCTTGGAGAGTGTAGACAAATTCTCATCAGGGATATGCAGGTTGATGAGT
TGGAGAAGGTTGCTATACTTACCCCCTGCCAAGTCACCCAATATTGGACT
CTCATTCATCTCCATCGGCACACTACAAACGCTGACTCCTATTCCACCCC
ATGAACTCAGGTATGACCCCTTCATGCACCACTTCGAGTAGCTCGGCAAC
GTCCACGCGCAAGGCCGAGTTTATTTCGGTTCGCAAGTCCCTCGTCCAAC
CCGCCACACCCCCTCCTTCCAGCCAACCCCCTCAAGTGCCCCTCGCAGGC
TGCGATATGATTTACGATCACTTTCAAATTAAGGCCGCTTTCTTCTTTAC
CGAGATCCTGAACCCCCCGTTGCTGAAAGCAAGCCTGGCTAAGGCCTTGG
ATGCATATCCGCTGCTTGCGGGCCGCGCACGGAAATCAGGTAGCAGTGCT
GCGTGGATTGATTGTTGTGGATCAGGCGTGGAGGTCGTTGAGCAAGTGGC
GCGTGTGACGGGCACGGACGGATTGGTACACGGATATACAAATGAATTCA
TGGATTCGTTTGCTCGAGGGGCGTTCATGACGAAAGCGAACGACAAGAGC
TCCCCTCTAATGACTGTGACACTGACGGAGGTGACGTACGGAGAAAGCTT
GTCCTGTCGTTACCGGGGTATCTCGGCCTTTTCCTGTCGCTGCGCGGGGG
AGGGAGACGAGGACGAAATAGAGGAGAGAAGAGAGGAATCAGCAGGAGCA
GCAGCGTCCCCGCCCGTGCCTGATACCGCAAGCCGCATGGTCAGGACCAA
CGCCAGCAGCACCTCTCCCCCACCCCAATTTAACCCACCCTCCACCAGCC
TTCCCCCCATACCTTCCCGCACCGTCCCTTCACCCGGCGCTATCTCTCCC
CCAACCATTCGATACGCCATCGGTCTCTCCTGCTCCCATTCCGCCGCGGA
CGGGTGTGCGATTTCTGCCTTTCTGGGCACATGGGTCAGAGCGGGAGCCA
ACCTGCCTATGCAACACTCTATCCACACCCGAGGTCCCCTCCTAAACCAT
GGGCCTTTGGACGACGAGCGTCAGCCATCCCCTGCTAAATATCGCCTTCT
TTCGCCCCTGGGCAAGGCCATGTTGATGTGGCGTTTTGCGTGGCACCAGA
TTGGGTGCGAGGTGGCCATTTTGAGGTTTGACAGGGAGGAAGTGGAGGAG
GTGAAGAGACAGGCAATGAAACGCTTGCATGGAAGTGAGCAATGGGTCTC
GACGAGCAATGCCCTGGCGGCCCATCTGTGGCCAATTATGTCGGATTTAT
TGACTGGAGCACGAAAGGGAGGGCGGGGGGAAGGGACGGGTCTGTTGGTG
CCCATGAGTGTGGTGGTAAACAGTAGGAAGCAACTGGGCTTGCCGACGCA
TTATTGCGGAAACGTAGTGTCGATCCAGGACGTACCCGACGGGAAGACCG
AAGATGACCTCACAGCCCGTGCCCTTAAAGTCCGTTATGCGTCAGCGGCC
TCTGAGGAGGAAGCGCGACGCGATCATTCTTATATGCAGAGGGTAGGGAC
TCGAGGCCAGGGAGACTCTCTTTCGTACAAGCGAATGGCGGACATGATCA
TGGGCAAGCCAGGGCTGCTCTGGGACGATATTTCAAGTTTTTCGAGCGGT
GCCATGGCTCACTTGAGATTTGGGGGCGCCTCACCCGTTGGAGCAGACCT
CTCCGCGCTCTCCATTCCGGGAATGATGTTTGTCGTGGCCCCTCCGCTAG
GGCAGGAGGGAGGAGGGGAGGGAGGGAAGGAGGTGAGGGTGGCGTTGCCA
AAGAAATTAGCGCGGAAGTTGAGGAGCAGTGAGTGGCAGGGGAGGGTTCA
TAAATTTAGGCGGTGGCCCACGGCGAGGGCGTCGCCGGCTTTGATACCTG
CCGAGGGGGAGGGAGGGGGAGAGGGAGAGGAAAAGACAAAAGTGGAAGGT
GGGATTTTGGGACTTGAGGAGGATGGGAAGGACTCACATAAGAGATCGGA
GGAAGGGGAACCGACAATGATGAAGGAGAAGGTTTGGGGGCTGTAGCGTT
TTGTG

Coding sequence (CDS) from alignment at scaffold_12:752201..754555+

>mRNA_5217 ID=mRNA_5217|Name=jgi.p|Nanoce1779_2|58793|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at scaffold_12:752201..754555+ (Nannochloropsis oceanica)
ATGAACTCAGGTATGACCCCTTCATGCACCACTTCGAGTAGCTCGGCAAC
GTCCACGCGCAAGGCCGAGTTTATTTCGGTTCGCAAGTCCCTCGTCCAAC
CCGCCACACCCCCTCCTTCCAGCCAACCCCCTCAAGTGCCCCTCGCAGGC
TGCGATATGATTTACGATCACTTTCAAATTAAGGCCGCTTTCTTCTTTAC
CGAGATCCTGAACCCCCCGTTGCTGAAAGCAAGCCTGGCTAAGGCCTTGG
ATGCATATCCGCTGCTTGCGGGCCGCGCACGGAAATCAGGTAGCAGTGCT
GCGTGGATTGATTGTTGTGGATCAGGCGTGGAGGTCGTTGAGCAAGTGGC
GCGTGTGACGGGCACGGACGGATTGGTACACGGATATACAAATGAATTCA
TGGATTCGTTTGCTCGAGGGGCGTTCATGACGAAAGCGAACGACAAGAGC
TCCCCTCTAATGACTGTGACACTGACGGAGGTGACGTACGGAGAAAGCTT
GTCCTGTCGTTACCGGGGTATCTCGGCCTTTTCCTGTCGCTGCGCGGGGG
AGGGAGACGAGGACGAAATAGAGGAGAGAAGAGAGGAATCAGCAGGAGCA
GCAGCGTCCCCGCCCGTGCCTGATACCGCAAGCCGCATGGTCAGGACCAA
CGCCAGCAGCACCTCTCCCCCACCCCAATTTAACCCACCCTCCACCAGCC
TTCCCCCCATACCTTCCCGCACCGTCCCTTCACCCGGCGCTATCTCTCCC
CCAACCATTCGATACGCCATCGGTCTCTCCTGCTCCCATTCCGCCGCGGA
CGGGTGTGCGATTTCTGCCTTTCTGGGCACATGGGTCAGAGCGGGAGCCA
ACCTGCCTATGCAACACTCTATCCACACCCGAGGTCCCCTCCTAAACCAT
GGGCCTTTGGACGACGAGCGTCAGCCATCCCCTGCTAAATATCGCCTTCT
TTCGCCCCTGGGCAAGGCCATGTTGATGTGGCGTTTTGCGTGGCACCAGA
TTGGGTGCGAGGTGGCCATTTTGAGGTTTGACAGGGAGGAAGTGGAGGAG
GTGAAGAGACAGGCAATGAAACGCTTGCATGGAAGTGAGCAATGGGTCTC
GACGAGCAATGCCCTGGCGGCCCATCTGTGGCCAATTATGTCGGATTTAT
TGACTGGAGCACGAAAGGGAGGGCGGGGGGAAGGGACGGGTCTGTTGGTG
CCCATGAGTGTGGTGGTAAACAGTAGGAAGCAACTGGGCTTGCCGACGCA
TTATTGCGGAAACGTAGTGTCGATCCAGGACGTACCCGACGGGAAGACCG
AAGATGACCTCACAGCCCGTGCCCTTAAAGTCCGTTATGCGTCAGCGGCC
TCTGAGGAGGAAGCGCGACGCGATCATTCTTATATGCAGAGGGTAGGGAC
TCGAGGCCAGGGAGACTCTCTTTCGTACAAGCGAATGGCGGACATGATCA
TGGGCAAGCCAGGGCTGCTCTGGGACGATATTTCAAGTTTTTCGAGCGGT
GCCATGGCTCACTTGAGATTTGGGGGCGCCTCACCCGTTGGAGCAGACCT
CTCCGCGCTCTCCATTCCGGGAATGATGTTTGTCGTGGCCCCTCCGCTAG
GGCAGGAGGGAGGAGGGGAGGGAGGGAAGGAGGTGAGGGTGGCGTTGCCA
AAGAAATTAGCGCGGAAGTTGAGGAGCAGTGAGTGGCAGGGGAGGGTTCA
TAAATTTAGGCGGTGGCCCACGGCGAGGGCGTCGCCGGCTTTGATACCTG
CCGAGGGGGAGGGAGGGGGAGAGGGAGAGGAAAAGACAAAAGTGGAAGGT
GGGATTTTGGGACTTGAGGAGGATGGGAAGGACTCACATAAGAGATCGGA
GGAAGGGGAACCGACAATGATGAAGGAGAAGGTTTGGGGGCTGTAG

Synonyms

Publications