jgi.p|Nanoce1779_2|591762, mRNA_5216 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591762
Unique NamemRNA_5216
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length832
Alignment locationscaffold_12:751339..752170 -

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Properties
Property NameValue
TranscriptId591848
TrackFilteredModels2
ProteinId591762
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:751339..752170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591762gene_5216Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591762mRNA_5216-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5216CDS_5216Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5216 ID=mRNA_5216|Name=jgi.p|Nanoce1779_2|591762|organism=Nannochloropsis oceanica|type=mRNA|length=832bp
CAGGCAGCCAGCGTGGCCCTGATCTCGTACCTGTGGCAAATAGCAGCGTC
TTCATTGTCCTCTTCTTCTCGTCCTGCCCACGGTATCCCATTAGCAAGCC
ACCATGCCCACCCCACCAAACTCCTGTGTCTTCGTCCCCCAGTGCCGCTC
CTTCCCGTACCTTTTCACCAAAATCCGCGACCTGAAGAGTTCCAACGAAA
GTTTTGCCTTTTATTCCTCGCGTATCATGACGGTCTTGGCCGAAGAGGCG
TTGGGTTTGGTTCCCTCCGCCCCTTTCCCTGTCGAGACCCCAACCCAAGC
AATGTTTGCTGGCACGCGTCTTATCGAAGAGGAAAGCCGGCTTTGCCTCG
TTTCCATCATTCGAGCGGGAGACAGTCTAATGGAAGCCGCTCGTAAACTT
GTTCCTCAGGCCGCGGTGGGGAAAATCCTGATTCAGCGTGACGAGAGCAG
CCGGGAGAAGTTGCCTGTTCATTACTACTCGAAACTCCCTCCTGACATTG
ATACTCGCTTCGTCATCCTGTGCGATCCCATGCTCGGCACGGGCGGAAGT
GCACTGTGTGCACTTGATATAATCGTCCAACAAGGGGGCGTGTCACCGAA
GCGAATAGTGTTTGTGTGTGTGGTGGCCTCGCCGGAGGGGCTACAAGCCC
TGCATGCGCGATACCCGGAAGTACAGGTCGTGGCAGGCGCGATAGATGAG
GGGTTGAATGAGGAGAAGTACATCATGCCGGGGCTGGGCGACTTTGGAGA
TCGATTTTATAACACCACCACCTCGACGTGGTTGAAAAAGGAGGTGGAGG
GATAGAGGGATTGATGGAAGAAGAATTTGGGG
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protein sequence of jgi.p|Nanoce1779_2|591762

>mRNA_5216-protein ID=mRNA_5216-protein|Name=jgi.p|Nanoce1779_2|591762|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MPTPPNSCVFVPQCRSFPYLFTKIRDLKSSNESFAFYSSRIMTVLAEEAL
GLVPSAPFPVETPTQAMFAGTRLIEEESRLCLVSIIRAGDSLMEAARKLV
PQAAVGKILIQRDESSREKLPVHYYSKLPPDIDTRFVILCDPMLGTGGSA
LCALDIIVQQGGVSPKRIVFVCVVASPEGLQALHARYPEVQVVAGAIDEG
LNEEKYIMPGLGDFGDRFYNTTTSTWLKKEVEG*
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mRNA from alignment at scaffold_12:751339..752170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5216 ID=mRNA_5216|Name=jgi.p|Nanoce1779_2|591762|organism=Nannochloropsis oceanica|type=mRNA|length=832bp|location=Sequence derived from alignment at scaffold_12:751339..752170- (Nannochloropsis oceanica)
CAGGCAGCCAGCGTGGCCCTGATCTCGTACCTGTGGCAAATAGCAGCGTC
TTCATTGTCCTCTTCTTCTCGTCCTGCCCACGGTATCCCATTAGCAAGCC
ACCATGCCCACCCCACCAAACTCCTGTGTCTTCGTCCCCCAGTGCCGCTC
CTTCCCGTACCTTTTCACCAAAATCCGCGACCTGAAGAGTTCCAACGAAA
GTTTTGCCTTTTATTCCTCGCGTATCATGACGGTCTTGGCCGAAGAGGCG
TTGGGTTTGGTTCCCTCCGCCCCTTTCCCTGTCGAGACCCCAACCCAAGC
AATGTTTGCTGGCACGCGTCTTATCGAAGAGGAAAGCCGGCTTTGCCTCG
TTTCCATCATTCGAGCGGGAGACAGTCTAATGGAAGCCGCTCGTAAACTT
GTTCCTCAGGCCGCGGTGGGGAAAATCCTGATTCAGCGTGACGAGAGCAG
CCGGGAGAAGTTGCCTGTTCATTACTACTCGAAACTCCCTCCTGACATTG
ATACTCGCTTCGTCATCCTGTGCGATCCCATGCTCGGCACGGGCGGAAGT
GCACTGTGTGCACTTGATATAATCGTCCAACAAGGGGGCGTGTCACCGAA
GCGAATAGTGTTTGTGTGTGTGGTGGCCTCGCCGGAGGGGCTACAAGCCC
TGCATGCGCGATACCCGGAAGTACAGGTCGTGGCAGGCGCGATAGATGAG
GGGTTGAATGAGGAGAAGTACATCATGCCGGGGCTGGGCGACTTTGGAGA
TCGATTTTATAACACCACCACCTCGACGTGGTTGAAAAAGGAGGTGGAGG
GATAGAGGGATTGATGGAAGAAGAATTTGGGG
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Coding sequence (CDS) from alignment at scaffold_12:751339..752170-

>mRNA_5216 ID=mRNA_5216|Name=jgi.p|Nanoce1779_2|591762|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_12:751339..752170- (Nannochloropsis oceanica)
ATGCCCACCCCACCAAACTCCTGTGTCTTCGTCCCCCAGTGCCGCTCCTT
CCCGTACCTTTTCACCAAAATCCGCGACCTGAAGAGTTCCAACGAAAGTT
TTGCCTTTTATTCCTCGCGTATCATGACGGTCTTGGCCGAAGAGGCGTTG
GGTTTGGTTCCCTCCGCCCCTTTCCCTGTCGAGACCCCAACCCAAGCAAT
GTTTGCTGGCACGCGTCTTATCGAAGAGGAAAGCCGGCTTTGCCTCGTTT
CCATCATTCGAGCGGGAGACAGTCTAATGGAAGCCGCTCGTAAACTTGTT
CCTCAGGCCGCGGTGGGGAAAATCCTGATTCAGCGTGACGAGAGCAGCCG
GGAGAAGTTGCCTGTTCATTACTACTCGAAACTCCCTCCTGACATTGATA
CTCGCTTCGTCATCCTGTGCGATCCCATGCTCGGCACGGGCGGAAGTGCA
CTGTGTGCACTTGATATAATCGTCCAACAAGGGGGCGTGTCACCGAAGCG
AATAGTGTTTGTGTGTGTGGTGGCCTCGCCGGAGGGGCTACAAGCCCTGC
ATGCGCGATACCCGGAAGTACAGGTCGTGGCAGGCGCGATAGATGAGGGG
TTGAATGAGGAGAAGTACATCATGCCGGGGCTGGGCGACTTTGGAGATCG
ATTTTATAACACCACCACCTCGACGTGGTTGAAAAAGGAGGTGGAGGGAT
AG
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Synonyms
Publications