jgi.p|Nanoce1779_2|566459, mRNA_5215 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|566459
Unique Name	mRNA_5215
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1452
Alignment location	scaffold_12:749673..751124 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	566545
Track	FilteredModels2
ProteinId	566459

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:749673..751124 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|566459	gene_5215	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|566459	mRNA_5215-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5215	CDS_5215	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:749673..751124+
coding sequence from alignment at scaffold_12:749673..751124+

mRNA sequence

>mRNA_5215 ID=mRNA_5215|Name=jgi.p|Nanoce1779_2|566459|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp
ATGGCTTTGATAGCACACAAAGATGCAGAAGGGGGAAGGTTATGGAAGGA
AGCATTGAAAATGGCGCGAATGCTTGCGGAGCCAACGACGGCTGCAGAAA
TGGAAGGGGAAGGGAAGGGAGATAAGGAGGGCTGGGGTTCGAATGGGGAT
CTGCTATTTCGAGTGTTTCCACCTGAGCAGGTGGCTGACTTGTTGGTGCG
GATGACGATAAACAGCCATCCCTGCTCTGTCTCCATCCCGAGCAGGAGCA
GCAGCAGCAGCACCAACAGCGGGACCATGTCTCTCAGTCCCTCAATTCAG
CAGCAGCTACAACAGCAAGTGCAAATTCTCGGCCTTTTCCCCTCCGTGGC
TGGAAAGGTCAATCACTCCTGCCGCCCCTCTGCTGCCCTGAGCTTCAGCT
ACACCCCTCCACAACAGGGAGGGAAGGAGGAAGTGAAGGAGGGACAGTGG
TGGCACCAGCACCTCAGAGCGGAGCTACGGGCGGTGCATGGGCTGGTCGG
CGGGGAGGAGGTGACATATTCTTACCTTTCCTCTCTACATTTTTCAAGGA
CAGAGAGACGAGAGCTGTTGAAGCAGGGCTTTCATTTTTTGTGCGGATGT
TGCCGGTGTGAGGAGGAGGAGAAGGAGGAGGCGGAGGCGAAGAAGAGAGG
AACACAGGAGTGGGCATGCTTGACATGTGGAGGTCGGGTTGAGCTGATGC
CATCTGTGGGGGAGGACGAGGGTGGGGAAAGGATGAAGGAGACAGAAAAC
AAAGGCTCGATGATGAAATGCATTAATTTACCCAGGCAATGTACTACCCT
CCTCCCCCAGCACCATTACCTTCAAGCTGTCCAACGAGGTCATGATCTTG
TGGCACAAGCGCAGCAAATAATGACAACATCCTTTTCCTCGTCCTTGTCT
TCGCCTCCTCCCTCCGCTGTTAAGTGCATGAAAGACTTGGGTGAGTGGTT
GGTGTCGGCGGGGTCTCTGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAA
GCACGGTTGCTAGCGGACAAGCACCCTTTGCGATGTGAGGCTGCGTTGCT
CTTAATGGGTATGGGACAAGAAAGAGTAAGGAGGCAGGGAGGGAGGGAGG
GAGGGAGGATGACGATGGAGGAGGAGATGGCCGTCGCAGTAGCAGCAGGA
GGGATGGAGTTATTTTTGTTGGGAAAGCATTTAGAAGAGCAGCCACAGAG
GGCATCATTTCTAGTAATTAAGGCAAAAGCAATGGTTGCCTTGGCGCAAG
ATAGGGAGGGAGGGAGGGAGGTGTGGAGGGAGGCTTTGAGGTTCCAGGCG
CGTCGTTTGGCACAAAAAGCCCAAGGGATATACGAGAGGGCATGGGGGAA
GGAGCATGTGATGGTCGTTGGGGTAAGGAGAATGGTAAAAGAGCTGGAAT
GA

protein sequence of jgi.p|Nanoce1779_2|566459

>mRNA_5215-protein ID=mRNA_5215-protein|Name=jgi.p|Nanoce1779_2|566459|organism=Nannochloropsis oceanica|type=polypeptide|length=484bp
MALIAHKDAEGGRLWKEALKMARMLAEPTTAAEMEGEGKGDKEGWGSNGD
LLFRVFPPEQVADLLVRMTINSHPCSVSIPSRSSSSSTNSGTMSLSPSIQ
QQLQQQVQILGLFPSVAGKVNHSCRPSAALSFSYTPPQQGGKEEVKEGQW
WHQHLRAELRAVHGLVGGEEVTYSYLSSLHFSRTERRELLKQGFHFLCGC
CRCEEEEKEEAEAKKRGTQEWACLTCGGRVELMPSVGEDEGGERMKETEN
KGSMMKCINLPRQCTTLLPQHHYLQAVQRGHDLVAQAQQIMTTSFSSSLS
SPPPSAVKCMKDLGEWLVSAGSLGGGGGGGGGGGGGGGGGGGGGGGGGGE
ARLLADKHPLRCEAALLLMGMGQERVRRQGGREGGRMTMEEEMAVAVAAG
GMELFLLGKHLEEQPQRASFLVIKAKAMVALAQDREGGREVWREALRFQA
RRLAQKAQGIYERAWGKEHVMVVGVRRMVKELE*

mRNA from alignment at scaffold_12:749673..751124+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5215 ID=mRNA_5215|Name=jgi.p|Nanoce1779_2|566459|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp|location=Sequence derived from alignment at scaffold_12:749673..751124+ (Nannochloropsis oceanica)
ATGGCTTTGATAGCACACAAAGATGCAGAAGGGGGAAGGTTATGGAAGGA
AGCATTGAAAATGGCGCGAATGCTTGCGGAGCCAACGACGGCTGCAGAAA
TGGAAGGGGAAGGGAAGGGAGATAAGGAGGGCTGGGGTTCGAATGGGGAT
CTGCTATTTCGAGTGTTTCCACCTGAGCAGGTGGCTGACTTGTTGGTGCG
GATGACGATAAACAGCCATCCCTGCTCTGTCTCCATCCCGAGCAGGAGCA
GCAGCAGCAGCACCAACAGCGGGACCATGTCTCTCAGTCCCTCAATTCAG
CAGCAGCTACAACAGCAAGTGCAAATTCTCGGCCTTTTCCCCTCCGTGGC
TGGAAAGGTCAATCACTCCTGCCGCCCCTCTGCTGCCCTGAGCTTCAGCT
ACACCCCTCCACAACAGGGAGGGAAGGAGGAAGTGAAGGAGGGACAGTGG
TGGCACCAGCACCTCAGAGCGGAGCTACGGGCGGTGCATGGGCTGGTCGG
CGGGGAGGAGGTGACATATTCTTACCTTTCCTCTCTACATTTTTCAAGGA
CAGAGAGACGAGAGCTGTTGAAGCAGGGCTTTCATTTTTTGTGCGGATGT
TGCCGGTGTGAGGAGGAGGAGAAGGAGGAGGCGGAGGCGAAGAAGAGAGG
AACACAGGAGTGGGCATGCTTGACATGTGGAGGTCGGGTTGAGCTGATGC
CATCTGTGGGGGAGGACGAGGGTGGGGAAAGGATGAAGGAGACAGAAAAC
AAAGGCTCGATGATGAAATGCATTAATTTACCCAGGCAATGTACTACCCT
CCTCCCCCAGCACCATTACCTTCAAGCTGTCCAACGAGGTCATGATCTTG
TGGCACAAGCGCAGCAAATAATGACAACATCCTTTTCCTCGTCCTTGTCT
TCGCCTCCTCCCTCCGCTGTTAAGTGCATGAAAGACTTGGGTGAGTGGTT
GGTGTCGGCGGGGTCTCTGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAA
GCACGGTTGCTAGCGGACAAGCACCCTTTGCGATGTGAGGCTGCGTTGCT
CTTAATGGGTATGGGACAAGAAAGAGTAAGGAGGCAGGGAGGGAGGGAGG
GAGGGAGGATGACGATGGAGGAGGAGATGGCCGTCGCAGTAGCAGCAGGA
GGGATGGAGTTATTTTTGTTGGGAAAGCATTTAGAAGAGCAGCCACAGAG
GGCATCATTTCTAGTAATTAAGGCAAAAGCAATGGTTGCCTTGGCGCAAG
ATAGGGAGGGAGGGAGGGAGGTGTGGAGGGAGGCTTTGAGGTTCCAGGCG
CGTCGTTTGGCACAAAAAGCCCAAGGGATATACGAGAGGGCATGGGGGAA
GGAGCATGTGATGGTCGTTGGGGTAAGGAGAATGGTAAAAGAGCTGGAAT
GA

Coding sequence (CDS) from alignment at scaffold_12:749673..751124+

>mRNA_5215 ID=mRNA_5215|Name=jgi.p|Nanoce1779_2|566459|organism=Nannochloropsis oceanica|type=CDS|length=1452bp|location=Sequence derived from alignment at scaffold_12:749673..751124+ (Nannochloropsis oceanica)
ATGGCTTTGATAGCACACAAAGATGCAGAAGGGGGAAGGTTATGGAAGGA
AGCATTGAAAATGGCGCGAATGCTTGCGGAGCCAACGACGGCTGCAGAAA
TGGAAGGGGAAGGGAAGGGAGATAAGGAGGGCTGGGGTTCGAATGGGGAT
CTGCTATTTCGAGTGTTTCCACCTGAGCAGGTGGCTGACTTGTTGGTGCG
GATGACGATAAACAGCCATCCCTGCTCTGTCTCCATCCCGAGCAGGAGCA
GCAGCAGCAGCACCAACAGCGGGACCATGTCTCTCAGTCCCTCAATTCAG
CAGCAGCTACAACAGCAAGTGCAAATTCTCGGCCTTTTCCCCTCCGTGGC
TGGAAAGGTCAATCACTCCTGCCGCCCCTCTGCTGCCCTGAGCTTCAGCT
ACACCCCTCCACAACAGGGAGGGAAGGAGGAAGTGAAGGAGGGACAGTGG
TGGCACCAGCACCTCAGAGCGGAGCTACGGGCGGTGCATGGGCTGGTCGG
CGGGGAGGAGGTGACATATTCTTACCTTTCCTCTCTACATTTTTCAAGGA
CAGAGAGACGAGAGCTGTTGAAGCAGGGCTTTCATTTTTTGTGCGGATGT
TGCCGGTGTGAGGAGGAGGAGAAGGAGGAGGCGGAGGCGAAGAAGAGAGG
AACACAGGAGTGGGCATGCTTGACATGTGGAGGTCGGGTTGAGCTGATGC
CATCTGTGGGGGAGGACGAGGGTGGGGAAAGGATGAAGGAGACAGAAAAC
AAAGGCTCGATGATGAAATGCATTAATTTACCCAGGCAATGTACTACCCT
CCTCCCCCAGCACCATTACCTTCAAGCTGTCCAACGAGGTCATGATCTTG
TGGCACAAGCGCAGCAAATAATGACAACATCCTTTTCCTCGTCCTTGTCT
TCGCCTCCTCCCTCCGCTGTTAAGTGCATGAAAGACTTGGGTGAGTGGTT
GGTGTCGGCGGGGTCTCTGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAA
GCACGGTTGCTAGCGGACAAGCACCCTTTGCGATGTGAGGCTGCGTTGCT
CTTAATGGGTATGGGACAAGAAAGAGTAAGGAGGCAGGGAGGGAGGGAGG
GAGGGAGGATGACGATGGAGGAGGAGATGGCCGTCGCAGTAGCAGCAGGA
GGGATGGAGTTATTTTTGTTGGGAAAGCATTTAGAAGAGCAGCCACAGAG
GGCATCATTTCTAGTAATTAAGGCAAAAGCAATGGTTGCCTTGGCGCAAG
ATAGGGAGGGAGGGAGGGAGGTGTGGAGGGAGGCTTTGAGGTTCCAGGCG
CGTCGTTTGGCACAAAAAGCCCAAGGGATATACGAGAGGGCATGGGGGAA
GGAGCATGTGATGGTCGTTGGGGTAAGGAGAATGGTAAAAGAGCTGGAAT
GA

Synonyms

Publications