jgi.p|Nanoce1779_2|591758, mRNA_5214 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591758
Unique Name	mRNA_5214
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1003
Alignment location	scaffold_12:748789..749791 -

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Properties


Property Name	Value
TranscriptId	591844
Track	FilteredModels2
ProteinId	591758

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:748789..749791 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591758	gene_5214	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591758	mRNA_5214-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5214	CDS_5214	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:748789..749791-
coding sequence from alignment at scaffold_12:748789..749791-

mRNA sequence

>mRNA_5214 ID=mRNA_5214|Name=jgi.p|Nanoce1779_2|591758|organism=Nannochloropsis oceanica|type=mRNA|length=1003bp
CCCTTCCCTTCCCCTTCCATTTCTGCAGCCGTCGTTGGCTCCGCAAGCAT
TCGCGCCATTTTCAATGCTTCCTTCCATAACCTTCCCCCTTCTGCATCTT
TGTGTGCTATCAAAGCCATGACCGTACTGAGGTCATCGTGCTCACTAAAT
GGAGGAGGCATATAGAGAATTCTACTGCTGCTGCTGCTTCTGCTGCTGTC
CTTCCTTTTAGCTGCAGCAGTTGCTGCAGCACGCTTTCCAAAGTTGTTTA
CAGCCATGCCAAGCATATGAATTGAAAGACGTGCGGCATCCATGTCGAAC
GATGACATTGACACAGATCCTTGTGGTCGTGGTTGCTGCTGCTGTTCCCT
TTGACGCTCCTGCGCCCGTCGATGGGCGTACACACGCAGTCGTTTTAAGC
GCAGGCACAACAGATGGTGCATGTCCTCGTCCTGATCAAAGCATCCGTGG
GAGCAATAATGAGCTGTGTGACAGTCTCCGCACATAAGGATTTTCTGGCC
GGGCAACGGTGGATGGAGGCAAACATGACAAACGCGTTCAATGGAGGGAC
TCGCGACCACAGCCACAAGGGCAGGCGCAGACATCAGCACAGTTCCTGGT
GCCGCAGTGGCACTGGGAGCAAGTGTCGTGTAACGCCCGACACGTTTGTT
GCCGGTGTCCTCCTTGGTGACGAGGCGGGGTTCGGTAGAAGGGAAGGCTG
GCGGTTGGGATGGTGGGGGTGGTGAGGCAGGGGAGGATGAAGGCGGCAGC
AAGCATGAGCGCATGGCCCATTCTTGACTACTGTTGTCGTCAGAGTCGCA
ACATCGAAGTAGAAGGGGGCCTGTGCAATCAGGGTTGGGGTACACATGTC
GTACCACCGTCGATCTTGCCTTTATGACCGGATGGTGGAGAGGGTGAGGA
GGCTCGGGCTCGTGTTGCTGCTCGCGTGGCAACGAGATGCCCAGAAAAGC
CGGTAACATGGATGACGGCGGTCCTGACACTAAGTGCGATGTCATGGTAC
CTG

protein sequence of jgi.p|Nanoce1779_2|591758

>mRNA_5214-protein ID=mRNA_5214-protein|Name=jgi.p|Nanoce1779_2|591758|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MVHVLVLIKASVGAIMSCVTVSAHKDFLAGQRWMEANMTNAFNGGTRDHS
HKGRRRHQHSSWCRSGTGSKCRVTPDTFVAGVLLGDEAGFGRREGWRLGW
WGW*

mRNA from alignment at scaffold_12:748789..749791-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5214 ID=mRNA_5214|Name=jgi.p|Nanoce1779_2|591758|organism=Nannochloropsis oceanica|type=mRNA|length=1003bp|location=Sequence derived from alignment at scaffold_12:748789..749791- (Nannochloropsis oceanica)
CCCTTCCCTTCCCCTTCCATTTCTGCAGCCGTCGTTGGCTCCGCAAGCAT
TCGCGCCATTTTCAATGCTTCCTTCCATAACCTTCCCCCTTCTGCATCTT
TGTGTGCTATCAAAGCCATGACCGTACTGAGGTCATCGTGCTCACTAAAT
GGAGGAGGCATATAGAGAATTCTACTGCTGCTGCTGCTTCTGCTGCTGTC
CTTCCTTTTAGCTGCAGCAGTTGCTGCAGCACGCTTTCCAAAGTTGTTTA
CAGCCATGCCAAGCATATGAATTGAAAGACGTGCGGCATCCATGTCGAAC
GATGACATTGACACAGATCCTTGTGGTCGTGGTTGCTGCTGCTGTTCCCT
TTGACGCTCCTGCGCCCGTCGATGGGCGTACACACGCAGTCGTTTTAAGC
GCAGGCACAACAGATGGTGCATGTCCTCGTCCTGATCAAAGCATCCGTGG
GAGCAATAATGAGCTGTGTGACAGTCTCCGCACATAAGGATTTTCTGGCC
GGGCAACGGTGGATGGAGGCAAACATGACAAACGCGTTCAATGGAGGGAC
TCGCGACCACAGCCACAAGGGCAGGCGCAGACATCAGCACAGTTCCTGGT
GCCGCAGTGGCACTGGGAGCAAGTGTCGTGTAACGCCCGACACGTTTGTT
GCCGGTGTCCTCCTTGGTGACGAGGCGGGGTTCGGTAGAAGGGAAGGCTG
GCGGTTGGGATGGTGGGGGTGGTGAGGCAGGGGAGGATGAAGGCGGCAGC
AAGCATGAGCGCATGGCCCATTCTTGACTACTGTTGTCGTCAGAGTCGCA
ACATCGAAGTAGAAGGGGGCCTGTGCAATCAGGGTTGGGGTACACATGTC
GTACCACCGTCGATCTTGCCTTTATGACCGGATGGTGGAGAGGGTGAGGA
GGCTCGGGCTCGTGTTGCTGCTCGCGTGGCAACGAGATGCCCAGAAAAGC
CGGTAACATGGATGACGGCGGTCCTGACACTAAGTGCGATGTCATGGTAC
CTG

Coding sequence (CDS) from alignment at scaffold_12:748789..749791-

>mRNA_5214 ID=mRNA_5214|Name=jgi.p|Nanoce1779_2|591758|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_12:748789..749791- (Nannochloropsis oceanica)
ATGGTGCATGTCCTCGTCCTGATCAAAGCATCCGTGGGAGCAATAATGAG
CTGTGTGACAGTCTCCGCACATAAGGATTTTCTGGCCGGGCAACGGTGGA
TGGAGGCAAACATGACAAACGCGTTCAATGGAGGGACTCGCGACCACAGC
CACAAGGGCAGGCGCAGACATCAGCACAGTTCCTGGTGCCGCAGTGGCAC
TGGGAGCAAGTGTCGTGTAACGCCCGACACGTTTGTTGCCGGTGTCCTCC
TTGGTGACGAGGCGGGGTTCGGTAGAAGGGAAGGCTGGCGGTTGGGATGG
TGGGGGTGGTGA

Synonyms

Publications