jgi.p|Nanoce1779_2|591758, mRNA_5214 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591758
Unique NamemRNA_5214
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1003
Alignment locationscaffold_12:748789..749791 -

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Properties
Property NameValue
TranscriptId591844
TrackFilteredModels2
ProteinId591758
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:748789..749791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591758gene_5214Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591758mRNA_5214-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5214CDS_5214Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5214 ID=mRNA_5214|Name=jgi.p|Nanoce1779_2|591758|organism=Nannochloropsis oceanica|type=mRNA|length=1003bp
CCCTTCCCTTCCCCTTCCATTTCTGCAGCCGTCGTTGGCTCCGCAAGCAT
TCGCGCCATTTTCAATGCTTCCTTCCATAACCTTCCCCCTTCTGCATCTT
TGTGTGCTATCAAAGCCATGACCGTACTGAGGTCATCGTGCTCACTAAAT
GGAGGAGGCATATAGAGAATTCTACTGCTGCTGCTGCTTCTGCTGCTGTC
CTTCCTTTTAGCTGCAGCAGTTGCTGCAGCACGCTTTCCAAAGTTGTTTA
CAGCCATGCCAAGCATATGAATTGAAAGACGTGCGGCATCCATGTCGAAC
GATGACATTGACACAGATCCTTGTGGTCGTGGTTGCTGCTGCTGTTCCCT
TTGACGCTCCTGCGCCCGTCGATGGGCGTACACACGCAGTCGTTTTAAGC
GCAGGCACAACAGATGGTGCATGTCCTCGTCCTGATCAAAGCATCCGTGG
GAGCAATAATGAGCTGTGTGACAGTCTCCGCACATAAGGATTTTCTGGCC
GGGCAACGGTGGATGGAGGCAAACATGACAAACGCGTTCAATGGAGGGAC
TCGCGACCACAGCCACAAGGGCAGGCGCAGACATCAGCACAGTTCCTGGT
GCCGCAGTGGCACTGGGAGCAAGTGTCGTGTAACGCCCGACACGTTTGTT
GCCGGTGTCCTCCTTGGTGACGAGGCGGGGTTCGGTAGAAGGGAAGGCTG
GCGGTTGGGATGGTGGGGGTGGTGAGGCAGGGGAGGATGAAGGCGGCAGC
AAGCATGAGCGCATGGCCCATTCTTGACTACTGTTGTCGTCAGAGTCGCA
ACATCGAAGTAGAAGGGGGCCTGTGCAATCAGGGTTGGGGTACACATGTC
GTACCACCGTCGATCTTGCCTTTATGACCGGATGGTGGAGAGGGTGAGGA
GGCTCGGGCTCGTGTTGCTGCTCGCGTGGCAACGAGATGCCCAGAAAAGC
CGGTAACATGGATGACGGCGGTCCTGACACTAAGTGCGATGTCATGGTAC
CTG
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protein sequence of jgi.p|Nanoce1779_2|591758

>mRNA_5214-protein ID=mRNA_5214-protein|Name=jgi.p|Nanoce1779_2|591758|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MVHVLVLIKASVGAIMSCVTVSAHKDFLAGQRWMEANMTNAFNGGTRDHS
HKGRRRHQHSSWCRSGTGSKCRVTPDTFVAGVLLGDEAGFGRREGWRLGW
WGW*
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mRNA from alignment at scaffold_12:748789..749791-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5214 ID=mRNA_5214|Name=jgi.p|Nanoce1779_2|591758|organism=Nannochloropsis oceanica|type=mRNA|length=1003bp|location=Sequence derived from alignment at scaffold_12:748789..749791- (Nannochloropsis oceanica)
CCCTTCCCTTCCCCTTCCATTTCTGCAGCCGTCGTTGGCTCCGCAAGCAT
TCGCGCCATTTTCAATGCTTCCTTCCATAACCTTCCCCCTTCTGCATCTT
TGTGTGCTATCAAAGCCATGACCGTACTGAGGTCATCGTGCTCACTAAAT
GGAGGAGGCATATAGAGAATTCTACTGCTGCTGCTGCTTCTGCTGCTGTC
CTTCCTTTTAGCTGCAGCAGTTGCTGCAGCACGCTTTCCAAAGTTGTTTA
CAGCCATGCCAAGCATATGAATTGAAAGACGTGCGGCATCCATGTCGAAC
GATGACATTGACACAGATCCTTGTGGTCGTGGTTGCTGCTGCTGTTCCCT
TTGACGCTCCTGCGCCCGTCGATGGGCGTACACACGCAGTCGTTTTAAGC
GCAGGCACAACAGATGGTGCATGTCCTCGTCCTGATCAAAGCATCCGTGG
GAGCAATAATGAGCTGTGTGACAGTCTCCGCACATAAGGATTTTCTGGCC
GGGCAACGGTGGATGGAGGCAAACATGACAAACGCGTTCAATGGAGGGAC
TCGCGACCACAGCCACAAGGGCAGGCGCAGACATCAGCACAGTTCCTGGT
GCCGCAGTGGCACTGGGAGCAAGTGTCGTGTAACGCCCGACACGTTTGTT
GCCGGTGTCCTCCTTGGTGACGAGGCGGGGTTCGGTAGAAGGGAAGGCTG
GCGGTTGGGATGGTGGGGGTGGTGAGGCAGGGGAGGATGAAGGCGGCAGC
AAGCATGAGCGCATGGCCCATTCTTGACTACTGTTGTCGTCAGAGTCGCA
ACATCGAAGTAGAAGGGGGCCTGTGCAATCAGGGTTGGGGTACACATGTC
GTACCACCGTCGATCTTGCCTTTATGACCGGATGGTGGAGAGGGTGAGGA
GGCTCGGGCTCGTGTTGCTGCTCGCGTGGCAACGAGATGCCCAGAAAAGC
CGGTAACATGGATGACGGCGGTCCTGACACTAAGTGCGATGTCATGGTAC
CTG
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Coding sequence (CDS) from alignment at scaffold_12:748789..749791-

>mRNA_5214 ID=mRNA_5214|Name=jgi.p|Nanoce1779_2|591758|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_12:748789..749791- (Nannochloropsis oceanica)
ATGGTGCATGTCCTCGTCCTGATCAAAGCATCCGTGGGAGCAATAATGAG
CTGTGTGACAGTCTCCGCACATAAGGATTTTCTGGCCGGGCAACGGTGGA
TGGAGGCAAACATGACAAACGCGTTCAATGGAGGGACTCGCGACCACAGC
CACAAGGGCAGGCGCAGACATCAGCACAGTTCCTGGTGCCGCAGTGGCAC
TGGGAGCAAGTGTCGTGTAACGCCCGACACGTTTGTTGCCGGTGTCCTCC
TTGGTGACGAGGCGGGGTTCGGTAGAAGGGAAGGCTGGCGGTTGGGATGG
TGGGGGTGGTGA
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Synonyms
Publications