jgi.p|Nanoce1779_2|591757, mRNA_5213 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591757
Unique Name	mRNA_5213
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1160
Alignment location	scaffold_12:748632..749791 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591843
Track	FilteredModels2
ProteinId	591757

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:748632..749791 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591757	gene_5213	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591757	mRNA_5213-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5213	CDS_5213	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:748632..749791+
coding sequence from alignment at scaffold_12:748632..749791+

mRNA sequence

>mRNA_5213 ID=mRNA_5213|Name=jgi.p|Nanoce1779_2|591757|organism=Nannochloropsis oceanica|type=mRNA|length=1160bp
CCTTTCAATCAATGTGTGCATCACATGCCTTTTTCTTTTTACAGGGTTTG
CTCTGCTTCTCAATCCCCTCAAAAACCATCGGACACACATCGACAGAGAA
GCTTTTTGAGGGGTTTTTGCTTTTTGACGTGTCATCTCCTCATTCTCCCC
TACAATGCAGGTACCATGACATCGCACTTAGTGTCAGGACCGCCGTCATC
CATGTTACCGGCTTTTCTGGGCATCTCGTTGCCACGCGAGCAGCAACACG
AGCCCGAGCCTCCTCACCCTCTCCACCATCCGGTCATAAAGGCAAGATCG
ACGGTGGTACGACATGTGTACCCCAACCCTGATTGCACAGGCCCCCTTCT
ACTTCGATGTTGCGACTCTGACGACAACAGTAGTCAAGAATGGGCCATGC
GCTCATGCTTGCTGCCGCCTTCATCCTCCCCTGCCTCACCACCCCCACCA
TCCCAACCGCCAGCCTTCCCTTCTACCGAACCCCGCCTCGTCACCAAGGA
GGACACCGGCAACAAACGTGTCGGGCGTTACACGACACTTGCTCCCAGTG
CCACTGCGGCACCAGGAACTGTGCTGATGTCTGCGCCTGCCCTTGTGGCT
GTGGTCGCGAGTCCCTCCATTGAACGCGTTTGTCATGTTTGCCTCCATCC
ACCGTTGCCCGGCCAGAAAATCCTTATGTGCGGAGACTGTCACACAGCTC
ATTATTGCTCCCACGGATGCTTTGATCAGGACGAGGACATGCACCATCTG
TTGTGCCTGCGCTTAAAACGACTGCGTGTGTACGCCCATCGACGGGCGCA
GGAGCGTCAAAGGGAACAGCAGCAGCAACCACGACCACAAGGATCTGTGT
CAATGTCATCGTTCGACATGGATGCCGCACGTCTTTCAATTCATATGCTT
GGCATGGCTGTAAACAACTTTGGAAAGCGTGCTGCAGCAACTGCTGCAGC
TAAAAGGAAGGACAGCAGCAGAAGCAGCAGCAGCAGTAGAATTCTCTATA
TGCCTCCTCCATTTAGTGAGCACGATGACCTCAGTACGGTCATGGCTTTG
ATAGCACACAAAGATGCAGAAGGGGGAAGGTTATGGAAGGAAGCATTGAA
AATGGCGCGAATGCTTGCGGAGCCAACGACGGCTGCAGAAATGGAAGGGG
AAGGGAAGGG

protein sequence of jgi.p|Nanoce1779_2|591757

>mRNA_5213-protein ID=mRNA_5213-protein|Name=jgi.p|Nanoce1779_2|591757|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MCASHAFFFLQGLLCFSIPSKTIGHTSTEKLFEGFLLFDVSSPHSPLQCR
YHDIALSVRTAVIHVTGFSGHLVATRAATRARASSPSPPSGHKGKIDGGT
TCVPQP*

mRNA from alignment at scaffold_12:748632..749791+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5213 ID=mRNA_5213|Name=jgi.p|Nanoce1779_2|591757|organism=Nannochloropsis oceanica|type=mRNA|length=1160bp|location=Sequence derived from alignment at scaffold_12:748632..749791+ (Nannochloropsis oceanica)
CCTTTCAATCAATGTGTGCATCACATGCCTTTTTCTTTTTACAGGGTTTG
CTCTGCTTCTCAATCCCCTCAAAAACCATCGGACACACATCGACAGAGAA
GCTTTTTGAGGGGTTTTTGCTTTTTGACGTGTCATCTCCTCATTCTCCCC
TACAATGCAGGTACCATGACATCGCACTTAGTGTCAGGACCGCCGTCATC
CATGTTACCGGCTTTTCTGGGCATCTCGTTGCCACGCGAGCAGCAACACG
AGCCCGAGCCTCCTCACCCTCTCCACCATCCGGTCATAAAGGCAAGATCG
ACGGTGGTACGACATGTGTACCCCAACCCTGATTGCACAGGCCCCCTTCT
ACTTCGATGTTGCGACTCTGACGACAACAGTAGTCAAGAATGGGCCATGC
GCTCATGCTTGCTGCCGCCTTCATCCTCCCCTGCCTCACCACCCCCACCA
TCCCAACCGCCAGCCTTCCCTTCTACCGAACCCCGCCTCGTCACCAAGGA
GGACACCGGCAACAAACGTGTCGGGCGTTACACGACACTTGCTCCCAGTG
CCACTGCGGCACCAGGAACTGTGCTGATGTCTGCGCCTGCCCTTGTGGCT
GTGGTCGCGAGTCCCTCCATTGAACGCGTTTGTCATGTTTGCCTCCATCC
ACCGTTGCCCGGCCAGAAAATCCTTATGTGCGGAGACTGTCACACAGCTC
ATTATTGCTCCCACGGATGCTTTGATCAGGACGAGGACATGCACCATCTG
TTGTGCCTGCGCTTAAAACGACTGCGTGTGTACGCCCATCGACGGGCGCA
GGAGCGTCAAAGGGAACAGCAGCAGCAACCACGACCACAAGGATCTGTGT
CAATGTCATCGTTCGACATGGATGCCGCACGTCTTTCAATTCATATGCTT
GGCATGGCTGTAAACAACTTTGGAAAGCGTGCTGCAGCAACTGCTGCAGC
TAAAAGGAAGGACAGCAGCAGAAGCAGCAGCAGCAGTAGAATTCTCTATA
TGCCTCCTCCATTTAGTGAGCACGATGACCTCAGTACGGTCATGGCTTTG
ATAGCACACAAAGATGCAGAAGGGGGAAGGTTATGGAAGGAAGCATTGAA
AATGGCGCGAATGCTTGCGGAGCCAACGACGGCTGCAGAAATGGAAGGGG
AAGGGAAGGG

Coding sequence (CDS) from alignment at scaffold_12:748632..749791+

>mRNA_5213 ID=mRNA_5213|Name=jgi.p|Nanoce1779_2|591757|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_12:748632..749791+ (Nannochloropsis oceanica)
ATGTGTGCATCACATGCCTTTTTCTTTTTACAGGGTTTGCTCTGCTTCTC
AATCCCCTCAAAAACCATCGGACACACATCGACAGAGAAGCTTTTTGAGG
GGTTTTTGCTTTTTGACGTGTCATCTCCTCATTCTCCCCTACAATGCAGG
TACCATGACATCGCACTTAGTGTCAGGACCGCCGTCATCCATGTTACCGG
CTTTTCTGGGCATCTCGTTGCCACGCGAGCAGCAACACGAGCCCGAGCCT
CCTCACCCTCTCCACCATCCGGTCATAAAGGCAAGATCGACGGTGGTACG
ACATGTGTACCCCAACCCTGA

Synonyms

Publications