jgi.p|Nanoce1779_2|591753, mRNA_5211 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591753
Unique NamemRNA_5211
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length729
Alignment locationscaffold_12:745780..746508 -

Link to JBrowse

Properties
Property NameValue
TranscriptId591839
TrackFilteredModels2
ProteinId591753
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:745780..746508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591753gene_5211Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591753mRNA_5211-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5211CDS_5211Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5211 ID=mRNA_5211|Name=jgi.p|Nanoce1779_2|591753|organism=Nannochloropsis oceanica|type=mRNA|length=729bp
GGTATCTTGAGACCGATGGGGGGGCAGAGCACAATAGTTTCTGTCTGAGG
GGAGAAATGGAAGGAGAGAAGGGATGAGGGAGAAGGGAGGGAGAGAAAAG
TGTGACGAAAGTTTCTTGTTGTAAGATAAGTGAAAAGAAGGGAGATTGAG
AGTGGGTAGACTGACAAGCTGCAGGATCGGGGAAGAAGAGGACCGAGAGC
CATAGATTTGGACTCCGCCACAGCAGGACGGGATGAAACCATAAATTTTA
AATTGAACAAGAGGGCCCAAATAGAATTGAGTTGACTAATAACAGAGGTT
GATGGTTCGGAGACGAATGGTTCTCTTTGTTGCCGTTCTGTTCATGGATA
GTGGAGTGGGCTTTCGCACTTATGGTGAAAGGCGAAGGGGAATGACTGAT
AAGTGCAGTGCCTTATACCTACTACAACTACTACTCTTCTCCTCCTACTT
CTTGCTCCATCGTCCTTCATTTTACTATAGTCTTCGGCAATCAAGGTCGC
ATATTATCAACAATTACATTGGTTTTGATTCAAATCGCTCTTAATGAAGT
CGCCCTTGGGACAAGCAGATACATACAGAGACACAGACAGACAGACACTG
ACAGACAGACACTGACAGACACACACACTCACTCACACACAAATCTATCT
CCCTTTCTCTATCTCTCAAAACCAGCACCTTTCATTCGCCTTTCCTTCCT
TATCCCCTGATTATTTCGCGGCACCCACC
back to top

protein sequence of jgi.p|Nanoce1779_2|591753

>mRNA_5211-protein ID=mRNA_5211-protein|Name=jgi.p|Nanoce1779_2|591753|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MVRRRMVLFVAVLFMDSGVGFRTYGERRRGMTDKCSALYLLQLLLFSSYF
LLHRPSFYYSLRQSRSHIINNYIGFDSNRS*
back to top

mRNA from alignment at scaffold_12:745780..746508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5211 ID=mRNA_5211|Name=jgi.p|Nanoce1779_2|591753|organism=Nannochloropsis oceanica|type=mRNA|length=729bp|location=Sequence derived from alignment at scaffold_12:745780..746508- (Nannochloropsis oceanica)
GGTATCTTGAGACCGATGGGGGGGCAGAGCACAATAGTTTCTGTCTGAGG
GGAGAAATGGAAGGAGAGAAGGGATGAGGGAGAAGGGAGGGAGAGAAAAG
TGTGACGAAAGTTTCTTGTTGTAAGATAAGTGAAAAGAAGGGAGATTGAG
AGTGGGTAGACTGACAAGCTGCAGGATCGGGGAAGAAGAGGACCGAGAGC
CATAGATTTGGACTCCGCCACAGCAGGACGGGATGAAACCATAAATTTTA
AATTGAACAAGAGGGCCCAAATAGAATTGAGTTGACTAATAACAGAGGTT
GATGGTTCGGAGACGAATGGTTCTCTTTGTTGCCGTTCTGTTCATGGATA
GTGGAGTGGGCTTTCGCACTTATGGTGAAAGGCGAAGGGGAATGACTGAT
AAGTGCAGTGCCTTATACCTACTACAACTACTACTCTTCTCCTCCTACTT
CTTGCTCCATCGTCCTTCATTTTACTATAGTCTTCGGCAATCAAGGTCGC
ATATTATCAACAATTACATTGGTTTTGATTCAAATCGCTCTTAATGAAGT
CGCCCTTGGGACAAGCAGATACATACAGAGACACAGACAGACAGACACTG
ACAGACAGACACTGACAGACACACACACTCACTCACACACAAATCTATCT
CCCTTTCTCTATCTCTCAAAACCAGCACCTTTCATTCGCCTTTCCTTCCT
TATCCCCTGATTATTTCGCGGCACCCACC
back to top

Coding sequence (CDS) from alignment at scaffold_12:745780..746508-

>mRNA_5211 ID=mRNA_5211|Name=jgi.p|Nanoce1779_2|591753|organism=Nannochloropsis oceanica|type=CDS|length=243bp|location=Sequence derived from alignment at scaffold_12:745780..746508- (Nannochloropsis oceanica)
ATGGTTCGGAGACGAATGGTTCTCTTTGTTGCCGTTCTGTTCATGGATAG
TGGAGTGGGCTTTCGCACTTATGGTGAAAGGCGAAGGGGAATGACTGATA
AGTGCAGTGCCTTATACCTACTACAACTACTACTCTTCTCCTCCTACTTC
TTGCTCCATCGTCCTTCATTTTACTATAGTCTTCGGCAATCAAGGTCGCA
TATTATCAACAATTACATTGGTTTTGATTCAAATCGCTCTTAA
back to top
Synonyms
Publications