jgi.p|Nanoce1779_2|563436, mRNA_521 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563436
Unique NamemRNA_521
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length555
Alignment locationscaffold_3:1264791..1265345 +

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Properties
Property NameValue
TranscriptId563522
TrackFilteredModels2
ProteinId563436
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1264791..1265345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563436gene_521Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563436mRNA_521-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_521CDS_521Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_521 ID=mRNA_521|Name=jgi.p|Nanoce1779_2|563436|organism=Nannochloropsis oceanica|type=mRNA|length=555bp
ATGGGGGTGGTGCTAGTGGTGGTGGTGAGGGAGGTAGGGATAGTGCCGCC
ATTACCATTACCAGCAGGAGCAGCACCAGCAGGTGGGGGGGGCACTGCAG
GCGTTGAAGCTATTGATGTGTTACCACCAGTTTGGTTCGTGGTTATTGTG
TTAGGGTTAATGTTGCACTCGATAGCAGCTGTTTCCGCCGAAAGGCCTTG
CAGAGGGCCTTCTGTTTCTTGGTGCGACGTGTCGGAGGACGAGGAAATGC
CCCCGCCTGACGAGAAAGGTAAGAGCGAGGTGGAAGAGGAGATAGAAGAA
GAAGGGCTGCAGGGAACAGAGACCGCTTCGCCGGAGGAAGAAGAGGATGT
GCCTCCAGGGGAAGATGGAGGTTCTGAGACGGGCTCGAGCTTGTCGCTGT
TCCTGCTGCTGGCGCTATTGGTGGTGTTAGTATGGGTGTCGAGGCCAGCG
TCAGGGACCTGGTCGCACGCTAGGGCAGCTCCTCTTATGGCGTTGCTCGG
GAACCTGGTCATCAGCAAAGAGTGCACTATGGACTTGGTTGGAAGGATGG
CTTGA
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protein sequence of jgi.p|Nanoce1779_2|563436

>mRNA_521-protein ID=mRNA_521-protein|Name=jgi.p|Nanoce1779_2|563436|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MGVVLVVVVREVGIVPPLPLPAGAAPAGGGGTAGVEAIDVLPPVWFVVIV
LGLMLHSIAAVSAERPCRGPSVSWCDVSEDEEMPPPDEKGKSEVEEEIEE
EGLQGTETASPEEEEDVPPGEDGGSETGSSLSLFLLLALLVVLVWVSRPA
SGTWSHARAAPLMALLGNLVISKECTMDLVGRMA*
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mRNA from alignment at scaffold_3:1264791..1265345+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_521 ID=mRNA_521|Name=jgi.p|Nanoce1779_2|563436|organism=Nannochloropsis oceanica|type=mRNA|length=555bp|location=Sequence derived from alignment at scaffold_3:1264791..1265345+ (Nannochloropsis oceanica)
ATGGGGGTGGTGCTAGTGGTGGTGGTGAGGGAGGTAGGGATAGTGCCGCC
ATTACCATTACCAGCAGGAGCAGCACCAGCAGGTGGGGGGGGCACTGCAG
GCGTTGAAGCTATTGATGTGTTACCACCAGTTTGGTTCGTGGTTATTGTG
TTAGGGTTAATGTTGCACTCGATAGCAGCTGTTTCCGCCGAAAGGCCTTG
CAGAGGGCCTTCTGTTTCTTGGTGCGACGTGTCGGAGGACGAGGAAATGC
CCCCGCCTGACGAGAAAGGTAAGAGCGAGGTGGAAGAGGAGATAGAAGAA
GAAGGGCTGCAGGGAACAGAGACCGCTTCGCCGGAGGAAGAAGAGGATGT
GCCTCCAGGGGAAGATGGAGGTTCTGAGACGGGCTCGAGCTTGTCGCTGT
TCCTGCTGCTGGCGCTATTGGTGGTGTTAGTATGGGTGTCGAGGCCAGCG
TCAGGGACCTGGTCGCACGCTAGGGCAGCTCCTCTTATGGCGTTGCTCGG
GAACCTGGTCATCAGCAAAGAGTGCACTATGGACTTGGTTGGAAGGATGG
CTTGA
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Coding sequence (CDS) from alignment at scaffold_3:1264791..1265345+

>mRNA_521 ID=mRNA_521|Name=jgi.p|Nanoce1779_2|563436|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_3:1264791..1265345+ (Nannochloropsis oceanica)
ATGGGGGTGGTGCTAGTGGTGGTGGTGAGGGAGGTAGGGATAGTGCCGCC
ATTACCATTACCAGCAGGAGCAGCACCAGCAGGTGGGGGGGGCACTGCAG
GCGTTGAAGCTATTGATGTGTTACCACCAGTTTGGTTCGTGGTTATTGTG
TTAGGGTTAATGTTGCACTCGATAGCAGCTGTTTCCGCCGAAAGGCCTTG
CAGAGGGCCTTCTGTTTCTTGGTGCGACGTGTCGGAGGACGAGGAAATGC
CCCCGCCTGACGAGAAAGGTAAGAGCGAGGTGGAAGAGGAGATAGAAGAA
GAAGGGCTGCAGGGAACAGAGACCGCTTCGCCGGAGGAAGAAGAGGATGT
GCCTCCAGGGGAAGATGGAGGTTCTGAGACGGGCTCGAGCTTGTCGCTGT
TCCTGCTGCTGGCGCTATTGGTGGTGTTAGTATGGGTGTCGAGGCCAGCG
TCAGGGACCTGGTCGCACGCTAGGGCAGCTCCTCTTATGGCGTTGCTCGG
GAACCTGGTCATCAGCAAAGAGTGCACTATGGACTTGGTTGGAAGGATGG
CTTGA
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Synonyms
Publications