jgi.p|Nanoce1779_2|591749, mRNA_5209 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591749
Unique NamemRNA_5209
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length983
Alignment locationscaffold_12:742261..743243 +

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Properties
Property NameValue
TranscriptId591835
TrackFilteredModels2
ProteinId591749
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:742261..743243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591749gene_5209Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591749mRNA_5209-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5209CDS_5209Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5209 ID=mRNA_5209|Name=jgi.p|Nanoce1779_2|591749|organism=Nannochloropsis oceanica|type=mRNA|length=983bp
GGAGGGAGAGGAGCTAAAGGAGGGAGGAAGGGGAGAAGGGGGAGAAGAAG
AGGGAAGGAGGAGGGAAATTGAGGAGGTACTTCGGGAGCATATCTGGAAG
CAAGAGGAAATGCATCAAAAAGAGGAGGCCTTAGAATAGCAGCAGCATCA
TCTTCATCATCATCAGCAACAGAAGCAGCGGACTCGAGGCAGAATGACCT
CGTCACCAGCATCCGTGTATGTGGTGGCGGGATTAGTGGTGAAGGAGATG
ATTGACATGCCACTTGTCCCTCCGGAGGAGACAGAGGAGAAGGAAGGTGT
GGAGGAAGTCTGAGAGGATATAACATCGCATCCTCTTTTACTGTGGAGCT
ACCTTTCGACGGTCGATATGGAGGAGAAGAGGGAGGCATGAGGGCAGGAG
GAGGGGCGTAGAAGAAAAGGAGAGGGGAGGTTATTCGGCATGCACTCAAG
AGTGTATCGAATACGGAACCGAATGACGGTGTAAAAATGATGTATGCATG
GTTTATGCACGTAGAAATGCCTAGAGATATGTTGGCATGTGAAGTTGTTG
ACGAATCACCTTTATTTTTCATACCAATTACATGGGCCCGCAGCCTTTGC
CGCCAACACGACGCGGAAGGATGAGATCATAGCACGACAGGAAAAAGATG
TGATCCTTTGTAGATTTGTGCACATATGGATGTGATGGATACTGCTGGCT
TGAAATTACCCGCAGCTTTCGTTCTTATCTCTCTTGCCTTTCTCACACCC
TCCAGCTACCCTGCTGCGCAGGACCTTCGTACATGCTCGCTGTCCAACCC
GGCTGCCCGATTCAACCACCTCACACTGCCACACTTACATCACGTCATAC
TCAAATCCCGATACCCACTCCCTTTAACCCTCTCTGTATAATCTATAGAC
CGTGTAGAAACAAGGATGCAATCGTCATCCAAAAGTCTGCGCCGCAGCGG
ATTGCTCCTTCTCTTTCCCTGCTTGTTCTGGGG
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protein sequence of jgi.p|Nanoce1779_2|591749

>mRNA_5209-protein ID=mRNA_5209-protein|Name=jgi.p|Nanoce1779_2|591749|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MDVMDTAGLKLPAAFVLISLAFLTPSSYPAAQDLRTCSLSNPAARFNHLT
LPHLHHVILKSRYPLPLTLSV*
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mRNA from alignment at scaffold_12:742261..743243+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5209 ID=mRNA_5209|Name=jgi.p|Nanoce1779_2|591749|organism=Nannochloropsis oceanica|type=mRNA|length=983bp|location=Sequence derived from alignment at scaffold_12:742261..743243+ (Nannochloropsis oceanica)
GGAGGGAGAGGAGCTAAAGGAGGGAGGAAGGGGAGAAGGGGGAGAAGAAG
AGGGAAGGAGGAGGGAAATTGAGGAGGTACTTCGGGAGCATATCTGGAAG
CAAGAGGAAATGCATCAAAAAGAGGAGGCCTTAGAATAGCAGCAGCATCA
TCTTCATCATCATCAGCAACAGAAGCAGCGGACTCGAGGCAGAATGACCT
CGTCACCAGCATCCGTGTATGTGGTGGCGGGATTAGTGGTGAAGGAGATG
ATTGACATGCCACTTGTCCCTCCGGAGGAGACAGAGGAGAAGGAAGGTGT
GGAGGAAGTCTGAGAGGATATAACATCGCATCCTCTTTTACTGTGGAGCT
ACCTTTCGACGGTCGATATGGAGGAGAAGAGGGAGGCATGAGGGCAGGAG
GAGGGGCGTAGAAGAAAAGGAGAGGGGAGGTTATTCGGCATGCACTCAAG
AGTGTATCGAATACGGAACCGAATGACGGTGTAAAAATGATGTATGCATG
GTTTATGCACGTAGAAATGCCTAGAGATATGTTGGCATGTGAAGTTGTTG
ACGAATCACCTTTATTTTTCATACCAATTACATGGGCCCGCAGCCTTTGC
CGCCAACACGACGCGGAAGGATGAGATCATAGCACGACAGGAAAAAGATG
TGATCCTTTGTAGATTTGTGCACATATGGATGTGATGGATACTGCTGGCT
TGAAATTACCCGCAGCTTTCGTTCTTATCTCTCTTGCCTTTCTCACACCC
TCCAGCTACCCTGCTGCGCAGGACCTTCGTACATGCTCGCTGTCCAACCC
GGCTGCCCGATTCAACCACCTCACACTGCCACACTTACATCACGTCATAC
TCAAATCCCGATACCCACTCCCTTTAACCCTCTCTGTATAATCTATAGAC
CGTGTAGAAACAAGGATGCAATCGTCATCCAAAAGTCTGCGCCGCAGCGG
ATTGCTCCTTCTCTTTCCCTGCTTGTTCTGGGG
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Coding sequence (CDS) from alignment at scaffold_12:742261..743243+

>mRNA_5209 ID=mRNA_5209|Name=jgi.p|Nanoce1779_2|591749|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_12:742261..743243+ (Nannochloropsis oceanica)
ATGGATGTGATGGATACTGCTGGCTTGAAATTACCCGCAGCTTTCGTTCT
TATCTCTCTTGCCTTTCTCACACCCTCCAGCTACCCTGCTGCGCAGGACC
TTCGTACATGCTCGCTGTCCAACCCGGCTGCCCGATTCAACCACCTCACA
CTGCCACACTTACATCACGTCATACTCAAATCCCGATACCCACTCCCTTT
AACCCTCTCTGTATAA
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Synonyms
Publications