jgi.p|Nanoce1779_2|639718, mRNA_5208 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|639718
Unique Name	mRNA_5208
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	816
Alignment location	scaffold_12:741421..742573 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	639804
Track	FilteredModels2
ProteinId	639718

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:741421..742573 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639718	gene_5208	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639718	mRNA_5208-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5208	CDS_5208	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:741421..742573+
coding sequence from alignment at scaffold_12:741421..742573+

mRNA sequence

>mRNA_5208 ID=mRNA_5208|Name=jgi.p|Nanoce1779_2|639718|organism=Nannochloropsis oceanica|type=mRNA|length=816bp
ATGTCTTTTTTGGGGAGGGCTACAGACACCGCCCCTCTCCTCAAATTCCA
AGACACGGGCTTCTCCTCCCCCTCGGCTGACGCCGGCCCATTGATGCTCG
CCGTCTATCATGGCTCCCTTTCCGATATCTGCTTTCTTCTTCGACACGGC
GATTATGACCCGGCCGCTGCGCATAATGCCTACGGGGAATCTCTCCTTCA
CCTGGCGGCCGCTTCCCCCTCCCCCAACGTCTCCACTGTCCTTAAAGAGT
TTATGGAGGGAGGAGCGATGACGAATGTTAATTGCAAGGACAACGCGCGC
CGAACTCCTTTGCATGTGACAGTAGCGGCCACGGGCCCGGCGGGAGTGAA
TACGCCGACGGTCGTTAATGCATTGGTTTCGAGGGGCGCTGATGTAGATG
CAGAGGACGAAGAAGGTCAGACGCCGTTACACGTGCCTGTATCGGCCGGA
CGCCTTCAGGTCACGCGGTTGCTGCTCTCTTACAAGGCAAAAGTGGGAGG
CAAGGACAAAGGGGGGCGAACGCCCCTGGCCTTGGCAGTTTCAATGGGAG
ACGTGAACTTAGTGCGGATGCTGCTGGCTCACGGAGCGAGGGTGGAGGGA
GAGGAGCTAAAGGAGGGAGGAAGGGGAGAAGGGGGAGAAGAAGAGGGAAG
GAGGAGGGAAATTGAGGAGCAACAGAAGCAGCGGACTCGAGGCAGAATGA
CCTCGTCACCAGCATCCGTGTATGTGGTGGCGGGATTAGTGGTGAAGGAG
ATGATTGACATGCCACTTGTCCCTCCGGAGGAGACAGAGGAGAAGGAAGG
TGTGGAGGAAGTCTGA

protein sequence of jgi.p|Nanoce1779_2|639718

>mRNA_5208-protein ID=mRNA_5208-protein|Name=jgi.p|Nanoce1779_2|639718|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MSFLGRATDTAPLLKFQDTGFSSPSADAGPLMLAVYHGSLSDICFLLRHG
DYDPAAAHNAYGESLLHLAAASPSPNVSTVLKEFMEGGAMTNVNCKDNAR
RTPLHVTVAATGPAGVNTPTVVNALVSRGADVDAEDEEGQTPLHVPVSAG
RLQVTRLLLSYKAKVGGKDKGGRTPLALAVSMGDVNLVRMLLAHGARVEG
EELKEGGRGEGGEEEGRRREIEEQQKQRTRGRMTSSPASVYVVAGLVVKE
MIDMPLVPPEETEEKEGVEEV*

mRNA from alignment at scaffold_12:741421..742573+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5208 ID=mRNA_5208|Name=jgi.p|Nanoce1779_2|639718|organism=Nannochloropsis oceanica|type=mRNA|length=1153bp|location=Sequence derived from alignment at scaffold_12:741421..742573+ (Nannochloropsis oceanica)
ATGTCTTTTTTGGGGAGGGTAAGGACAGAAAAGTAGAAATGGGTAGTATC
TTAAGCTTGCTGGACTCTACGAAAACAGATCGTATATATTTGACTTCCTC
TCCTCTTTAACCCCTCCTCGCTTTTTTCTTTCACCAGGCTACAGACACCG
CCCCTCTCCTCAAATTCCAAGACACGGGCTTCTCCTCCCCCTCGGCTGAC
GCCGGCCCATTGATGCTCGCCGTCTATCATGGCTCCCTTTCCGATATCTG
CTTTCTTCTTCGACACGGCGATTATGACCCGGCCGCTGCGCATAATGCCT
ACGGGGAATCTCTCCTTCACCTGGCGGCCGCTTCCCCCTCCCCCAACGTC
TCCACTGTCCTTAAAGAGTTTATGGAGGGAGGAGCGATGACGAATGTTAA
TTGCAAGGACAACGCGCGCCGAACTCCTTTGCATGTGACAGTAGCGGCCA
CGGGCCCGGCGGGAGTGAATACGCCGACGGTCGTTAATGCATTGGTTTCG
AGGGGCGCTGATGTAGATGCAGAGGTAAGGAGAGAGAGAGGGAAGGAGGG
TGGATGAAGGGAGAAGATTGCCAGGCATGAAAGAGGAAGGTTGTATACGA
GCTCATCAACTCTCTCACTATGTCGCTCTTAATCTCTCAAACGCACACAA
AGGACGAAGAAGGTCAGACGCCGTTACACGTGCCTGTATCGGCCGGACGC
CTTCAGGTCACGCGGTTGCTGCTCTCTTACAAGGCAAAAGTGGGAGGCAA
GGACAAAGGGGGGCGAACGCCCCTGGCCTTGGCAGTTTCAATGGGAGACG
TGAACTTAGTGCGGATGCTGCTGGCTCACGGAGCGAGGGTGGAGGGAGAG
GAGCTAAAGGAGGGAGGAAGGGGAGAAGGGGGAGAAGAAGAGGGAAGGAG
GAGGGAAATTGAGGAGGTACTTCGGGAGCATATCTGGAAGCAAGAGGAAA
TGCATCAAAAAGAGGAGGCCTTAGAATAGCAGCAGCATCATCTTCATCAT
CATCAGCAACAGAAGCAGCGGACTCGAGGCAGAATGACCTCGTCACCAGC
ATCCGTGTATGTGGTGGCGGGATTAGTGGTGAAGGAGATGATTGACATGC
CACTTGTCCCTCCGGAGGAGACAGAGGAGAAGGAAGGTGTGGAGGAAGTC
TGA

Coding sequence (CDS) from alignment at scaffold_12:741421..742573+

>mRNA_5208 ID=mRNA_5208|Name=jgi.p|Nanoce1779_2|639718|organism=Nannochloropsis oceanica|type=CDS|length=3264bp|location=Sequence derived from alignment at scaffold_12:741421..742573+ (Nannochloropsis oceanica)
ATGTCTTTTTTGGGGAGGGCTACAGACACCGCCCCTCTCCTCAAATTCCA
AGACACGGGCTTCTCCTCCCCCTCGGCTGACGCCGGCCCATTGATGCTCG
CCGTCTATCATGGCTCCCTTTCCGATATCTGCTTTCTTCTTCGACACGGC
GATTATGACCCGGCCGCTGCGCATAATGCCTACGGGGAATCTCTCCTTCA
CCTGGCGGCCGCTTCCCCCTCCCCCAACGTCTCCACTGTCCTTAAAGAGT
TTATGGAGGGAGGAGCGATGACGAATGTTAATTGCAAGGACAACGCGCGC
CGAACTCCTTTGCATGTGACAGTAGCGGCCACGGGCCCGGCGGGAGTGAA
TACGCCGACGGTCGTTAATGCATTGGTTTCGAGGGGCGCTGATGTAGATG
CAGAGGACGAAGAAGGTCAGACGCCGTTACACGTGCCTGTATCGGCCGGA
CGCCTTCAGGTCACGCGGTTGCTGCTCTCTTACAAGGCAAAAGTGGGAGG
CAAGGACAAAGGGGGGCGAACGCCCCTGGCCTTGGCAGTTTCAATGGGAG
ACGTGAACTTAGTGCGGATGCTGCTGGCTCACGGAGCGAGGGTGGAGGGA
GAGGAGCTAAAGGAGGGAGGAAGGGGAGAAGGGGGAGAAGAAGAGGGAAG
GAGGAGGGAAATTGAGGAGCAACAGAAGCAGCGGACTCGAGGCAGAATGA
CCTCGTCACCAGCATCCGTGTATGTGGTGGCGGGATTAGTGGTGAAGGAG
ATGATTGACATGCCACTTGTCCCTCCGGAGGAGACAGAGGAGAAGGAAGG
TGTGGAGGAAGTCTGAATGTCTTTTTTGGGGAGGGCTACAGACACCGCCC
CTCTCCTCAAATTCCAAGACACGGGCTTCTCCTCCCCCTCGGCTGACGCC
GGCCCATTGATGCTCGCCGTCTATCATGGCTCCCTTTCCGATATCTGCTT
TCTTCTTCGACACGGCGATTATGACCCGGCCGCTGCGCATAATGCCTACG
GGGAATCTCTCCTTCACCTGGCGGCCGCTTCCCCCTCCCCCAACGTCTCC
ACTGTCCTTAAAGAGTTTATGGAGGGAGGAGCGATGACGAATGTTAATTG
CAAGGACAACGCGCGCCGAACTCCTTTGCATGTGACAGTAGCGGCCACGG
GCCCGGCGGGAGTGAATACGCCGACGGTCGTTAATGCATTGGTTTCGAGG
GGCGCTGATGTAGATGCAGAGGACGAAGAAGGTCAGACGCCGTTACACGT
GCCTGTATCGGCCGGACGCCTTCAGGTCACGCGGTTGCTGCTCTCTTACA
AGGCAAAAGTGGGAGGCAAGGACAAAGGGGGGCGAACGCCCCTGGCCTTG
GCAGTTTCAATGGGAGACGTGAACTTAGTGCGGATGCTGCTGGCTCACGG
AGCGAGGGTGGAGGGAGAGGAGCTAAAGGAGGGAGGAAGGGGAGAAGGGG
GAGAAGAAGAGGGAAGGAGGAGGGAAATTGAGGAGCAACAGAAGCAGCGG
ACTCGAGGCAGAATGACCTCGTCACCAGCATCCGTGTATGTGGTGGCGGG
ATTAGTGGTGAAGGAGATGATTGACATGCCACTTGTCCCTCCGGAGGAGA
CAGAGGAGAAGGAAGGTGTGGAGGAAGTCTGAATGTCTTTTTTGGGGAGG
GCTACAGACACCGCCCCTCTCCTCAAATTCCAAGACACGGGCTTCTCCTC
CCCCTCGGCTGACGCCGGCCCATTGATGCTCGCCGTCTATCATGGCTCCC
TTTCCGATATCTGCTTTCTTCTTCGACACGGCGATTATGACCCGGCCGCT
GCGCATAATGCCTACGGGGAATCTCTCCTTCACCTGGCGGCCGCTTCCCC
CTCCCCCAACGTCTCCACTGTCCTTAAAGAGTTTATGGAGGGAGGAGCGA
TGACGAATGTTAATTGCAAGGACAACGCGCGCCGAACTCCTTTGCATGTG
ACAGTAGCGGCCACGGGCCCGGCGGGAGTGAATACGCCGACGGTCGTTAA
TGCATTGGTTTCGAGGGGCGCTGATGTAGATGCAGAGGACGAAGAAGGTC
AGACGCCGTTACACGTGCCTGTATCGGCCGGACGCCTTCAGGTCACGCGG
TTGCTGCTCTCTTACAAGGCAAAAGTGGGAGGCAAGGACAAAGGGGGGCG
AACGCCCCTGGCCTTGGCAGTTTCAATGGGAGACGTGAACTTAGTGCGGA
TGCTGCTGGCTCACGGAGCGAGGGTGGAGGGAGAGGAGCTAAAGGAGGGA
GGAAGGGGAGAAGGGGGAGAAGAAGAGGGAAGGAGGAGGGAAATTGAGGA
GCAACAGAAGCAGCGGACTCGAGGCAGAATGACCTCGTCACCAGCATCCG
TGTATGTGGTGGCGGGATTAGTGGTGAAGGAGATGATTGACATGCCACTT
GTCCCTCCGGAGGAGACAGAGGAGAAGGAAGGTGTGGAGGAAGTCTGAAT
GTCTTTTTTGGGGAGGGCTACAGACACCGCCCCTCTCCTCAAATTCCAAG
ACACGGGCTTCTCCTCCCCCTCGGCTGACGCCGGCCCATTGATGCTCGCC
GTCTATCATGGCTCCCTTTCCGATATCTGCTTTCTTCTTCGACACGGCGA
TTATGACCCGGCCGCTGCGCATAATGCCTACGGGGAATCTCTCCTTCACC
TGGCGGCCGCTTCCCCCTCCCCCAACGTCTCCACTGTCCTTAAAGAGTTT
ATGGAGGGAGGAGCGATGACGAATGTTAATTGCAAGGACAACGCGCGCCG
AACTCCTTTGCATGTGACAGTAGCGGCCACGGGCCCGGCGGGAGTGAATA
CGCCGACGGTCGTTAATGCATTGGTTTCGAGGGGCGCTGATGTAGATGCA
GAGGACGAAGAAGGTCAGACGCCGTTACACGTGCCTGTATCGGCCGGACG
CCTTCAGGTCACGCGGTTGCTGCTCTCTTACAAGGCAAAAGTGGGAGGCA
AGGACAAAGGGGGGCGAACGCCCCTGGCCTTGGCAGTTTCAATGGGAGAC
GTGAACTTAGTGCGGATGCTGCTGGCTCACGGAGCGAGGGTGGAGGGAGA
GGAGCTAAAGGAGGGAGGAAGGGGAGAAGGGGGAGAAGAAGAGGGAAGGA
GGAGGGAAATTGAGGAGCAACAGAAGCAGCGGACTCGAGGCAGAATGACC
TCGTCACCAGCATCCGTGTATGTGGTGGCGGGATTAGTGGTGAAGGAGAT
GATTGACATGCCACTTGTCCCTCCGGAGGAGACAGAGGAGAAGGAAGGTG
TGGAGGAAGTCTGA

Synonyms

Publications