jgi.p|Nanoce1779_2|591743, mRNA_5206 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591743
Unique NamemRNA_5206
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1237
Alignment locationscaffold_12:736017..737253 -

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Properties
Property NameValue
TranscriptId591829
TrackFilteredModels2
ProteinId591743
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:736017..737253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591743gene_5206Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591743mRNA_5206-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5206CDS_5206Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5206 ID=mRNA_5206|Name=jgi.p|Nanoce1779_2|591743|organism=Nannochloropsis oceanica|type=mRNA|length=1237bp
TAACGGGCGGGCGAGCGGCCGATCTCGATCTGGCACGTACGTACACCTTA
CCAAGCGTGTGTCAAACTTTTCGAGCTTGTTCCGTAGGCTGCAGGATACC
ATGAGAAGGCAATTCAAGCGATTTGATCGTTTCTTGTTATATGTATGCTA
TGGTGTTTGTTTTGTCGTTCCCCACCAAAATCTTCTCTTGGTTGTAAACA
CTCCCTGCGCCCCCTTGACTAGTTTAGTCGTCCCCCTCCTCAAACGTTGC
GGCTCATTTTACTTTTGCTTGGATTTCTCTGGTATTCACATCTATAAGTG
ACAACTAGTGCTCCTAGTCCTTTTTATTACCTGAATTCTCTCTTTCTACT
CTTCGCAAAAGACCGTCTCCCTTCGTTCAAGTTAGCCACACTCTTGTTCT
CCTATCGAGCAGCCTCTTGTCTTACCTCCACACATCAGTCTTCCCTTCAC
CCTCTTCGAATTTGTATTCGTGCAGCCTTATCGATGTCATATCTTAAATA
TAAAATTTACGATCTTTATGCTTATAAACAGGATATCGAACCTCTCTCCT
TCCCCCCTCTTCTTTATTTCATCCACAGGTCAGACAGATTCGTCCAGTTG
GCTTCTTCATTCTTCACACCTTCCTTCCCACCTCACATCCCCTCGCCCAC
GATCTCCTCTTTTACTGCTTCATCTTCTATCATCTACGCCCGAGGTCACT
TTGTGCCTCCCAAAAAAAAACTACAGCAAGATTATCGCCACGAGCAGCGG
CATTCTTTTTCGGATGTGCCACAGTATCACCATGTACGACTTTGTCTGCT
GCTCCTATTGTTACTGCTGTTGTCGCTGGAACCTTAGCAATTCGTTGCTA
GTGCTGCAGCAGCTGCTGCCGTTGCCACTGCTGCTGTTGGTGCTATTGTT
GTTGCTGCTGCTACTGCTGCTGCTGCCACCGCCGTTGCGGGAGCTGGCGG
TCGGCTCTACTCTAGCTGCTCTTTCTTCGACAAATGCAAGGACTGAGATG
TAGAAACTACATAATAAGGAACAGGAGGAGGTGAAAGAGCCGGGGCAGGA
GCAGGAGGAAAAAGCGGACGAAGACCCAGATTTCCCTCTCCATTCACTCC
TCCTCCCACGCCTCCTCCCCCCGTCTCGGTCCCCAACAGTCGTTTAAATG
GCTGACTCTGCTGCGGCTGTAGCTGCTGCTGCTGCTGCTGCTGTAGCTGC
TGCTGCTATAGCTGCTGCTGCTATAGCTGCTGCTGCT
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protein sequence of jgi.p|Nanoce1779_2|591743

>mRNA_5206-protein ID=mRNA_5206-protein|Name=jgi.p|Nanoce1779_2|591743|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MLINRISNLSPSPLFFISSTGQTDSSSWLLHSSHLPSHLTSPRPRSPLLL
LHLLSSTPEVTLCLPKKNYSKIIATSSGILFRMCHSITMYDFVCCSYCYC
CCRWNLSNSLLVLQQLLPLPLLLLVLLLLLLLLLLLPPPLRELAVGSTLA
ALSSTNARTEM*
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mRNA from alignment at scaffold_12:736017..737253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5206 ID=mRNA_5206|Name=jgi.p|Nanoce1779_2|591743|organism=Nannochloropsis oceanica|type=mRNA|length=1237bp|location=Sequence derived from alignment at scaffold_12:736017..737253- (Nannochloropsis oceanica)
TAACGGGCGGGCGAGCGGCCGATCTCGATCTGGCACGTACGTACACCTTA
CCAAGCGTGTGTCAAACTTTTCGAGCTTGTTCCGTAGGCTGCAGGATACC
ATGAGAAGGCAATTCAAGCGATTTGATCGTTTCTTGTTATATGTATGCTA
TGGTGTTTGTTTTGTCGTTCCCCACCAAAATCTTCTCTTGGTTGTAAACA
CTCCCTGCGCCCCCTTGACTAGTTTAGTCGTCCCCCTCCTCAAACGTTGC
GGCTCATTTTACTTTTGCTTGGATTTCTCTGGTATTCACATCTATAAGTG
ACAACTAGTGCTCCTAGTCCTTTTTATTACCTGAATTCTCTCTTTCTACT
CTTCGCAAAAGACCGTCTCCCTTCGTTCAAGTTAGCCACACTCTTGTTCT
CCTATCGAGCAGCCTCTTGTCTTACCTCCACACATCAGTCTTCCCTTCAC
CCTCTTCGAATTTGTATTCGTGCAGCCTTATCGATGTCATATCTTAAATA
TAAAATTTACGATCTTTATGCTTATAAACAGGATATCGAACCTCTCTCCT
TCCCCCCTCTTCTTTATTTCATCCACAGGTCAGACAGATTCGTCCAGTTG
GCTTCTTCATTCTTCACACCTTCCTTCCCACCTCACATCCCCTCGCCCAC
GATCTCCTCTTTTACTGCTTCATCTTCTATCATCTACGCCCGAGGTCACT
TTGTGCCTCCCAAAAAAAAACTACAGCAAGATTATCGCCACGAGCAGCGG
CATTCTTTTTCGGATGTGCCACAGTATCACCATGTACGACTTTGTCTGCT
GCTCCTATTGTTACTGCTGTTGTCGCTGGAACCTTAGCAATTCGTTGCTA
GTGCTGCAGCAGCTGCTGCCGTTGCCACTGCTGCTGTTGGTGCTATTGTT
GTTGCTGCTGCTACTGCTGCTGCTGCCACCGCCGTTGCGGGAGCTGGCGG
TCGGCTCTACTCTAGCTGCTCTTTCTTCGACAAATGCAAGGACTGAGATG
TAGAAACTACATAATAAGGAACAGGAGGAGGTGAAAGAGCCGGGGCAGGA
GCAGGAGGAAAAAGCGGACGAAGACCCAGATTTCCCTCTCCATTCACTCC
TCCTCCCACGCCTCCTCCCCCCGTCTCGGTCCCCAACAGTCGTTTAAATG
GCTGACTCTGCTGCGGCTGTAGCTGCTGCTGCTGCTGCTGCTGTAGCTGC
TGCTGCTATAGCTGCTGCTGCTATAGCTGCTGCTGCT
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Coding sequence (CDS) from alignment at scaffold_12:736017..737253-

>mRNA_5206 ID=mRNA_5206|Name=jgi.p|Nanoce1779_2|591743|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_12:736017..737253- (Nannochloropsis oceanica)
ATGCTTATAAACAGGATATCGAACCTCTCTCCTTCCCCCCTCTTCTTTAT
TTCATCCACAGGTCAGACAGATTCGTCCAGTTGGCTTCTTCATTCTTCAC
ACCTTCCTTCCCACCTCACATCCCCTCGCCCACGATCTCCTCTTTTACTG
CTTCATCTTCTATCATCTACGCCCGAGGTCACTTTGTGCCTCCCAAAAAA
AAACTACAGCAAGATTATCGCCACGAGCAGCGGCATTCTTTTTCGGATGT
GCCACAGTATCACCATGTACGACTTTGTCTGCTGCTCCTATTGTTACTGC
TGTTGTCGCTGGAACCTTAGCAATTCGTTGCTAGTGCTGCAGCAGCTGCT
GCCGTTGCCACTGCTGCTGTTGGTGCTATTGTTGTTGCTGCTGCTACTGC
TGCTGCTGCCACCGCCGTTGCGGGAGCTGGCGGTCGGCTCTACTCTAGCT
GCTCTTTCTTCGACAAATGCAAGGACTGAGATGTAG
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Synonyms
Publications