jgi.p|Nanoce1779_2|591743, mRNA_5206 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591743
Unique Name	mRNA_5206
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1237
Alignment location	scaffold_12:736017..737253 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591829
Track	FilteredModels2
ProteinId	591743

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:736017..737253 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591743	gene_5206	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591743	mRNA_5206-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5206	CDS_5206	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:736017..737253-
coding sequence from alignment at scaffold_12:736017..737253-

mRNA sequence

>mRNA_5206 ID=mRNA_5206|Name=jgi.p|Nanoce1779_2|591743|organism=Nannochloropsis oceanica|type=mRNA|length=1237bp
TAACGGGCGGGCGAGCGGCCGATCTCGATCTGGCACGTACGTACACCTTA
CCAAGCGTGTGTCAAACTTTTCGAGCTTGTTCCGTAGGCTGCAGGATACC
ATGAGAAGGCAATTCAAGCGATTTGATCGTTTCTTGTTATATGTATGCTA
TGGTGTTTGTTTTGTCGTTCCCCACCAAAATCTTCTCTTGGTTGTAAACA
CTCCCTGCGCCCCCTTGACTAGTTTAGTCGTCCCCCTCCTCAAACGTTGC
GGCTCATTTTACTTTTGCTTGGATTTCTCTGGTATTCACATCTATAAGTG
ACAACTAGTGCTCCTAGTCCTTTTTATTACCTGAATTCTCTCTTTCTACT
CTTCGCAAAAGACCGTCTCCCTTCGTTCAAGTTAGCCACACTCTTGTTCT
CCTATCGAGCAGCCTCTTGTCTTACCTCCACACATCAGTCTTCCCTTCAC
CCTCTTCGAATTTGTATTCGTGCAGCCTTATCGATGTCATATCTTAAATA
TAAAATTTACGATCTTTATGCTTATAAACAGGATATCGAACCTCTCTCCT
TCCCCCCTCTTCTTTATTTCATCCACAGGTCAGACAGATTCGTCCAGTTG
GCTTCTTCATTCTTCACACCTTCCTTCCCACCTCACATCCCCTCGCCCAC
GATCTCCTCTTTTACTGCTTCATCTTCTATCATCTACGCCCGAGGTCACT
TTGTGCCTCCCAAAAAAAAACTACAGCAAGATTATCGCCACGAGCAGCGG
CATTCTTTTTCGGATGTGCCACAGTATCACCATGTACGACTTTGTCTGCT
GCTCCTATTGTTACTGCTGTTGTCGCTGGAACCTTAGCAATTCGTTGCTA
GTGCTGCAGCAGCTGCTGCCGTTGCCACTGCTGCTGTTGGTGCTATTGTT
GTTGCTGCTGCTACTGCTGCTGCTGCCACCGCCGTTGCGGGAGCTGGCGG
TCGGCTCTACTCTAGCTGCTCTTTCTTCGACAAATGCAAGGACTGAGATG
TAGAAACTACATAATAAGGAACAGGAGGAGGTGAAAGAGCCGGGGCAGGA
GCAGGAGGAAAAAGCGGACGAAGACCCAGATTTCCCTCTCCATTCACTCC
TCCTCCCACGCCTCCTCCCCCCGTCTCGGTCCCCAACAGTCGTTTAAATG
GCTGACTCTGCTGCGGCTGTAGCTGCTGCTGCTGCTGCTGCTGTAGCTGC
TGCTGCTATAGCTGCTGCTGCTATAGCTGCTGCTGCT

protein sequence of jgi.p|Nanoce1779_2|591743

>mRNA_5206-protein ID=mRNA_5206-protein|Name=jgi.p|Nanoce1779_2|591743|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MLINRISNLSPSPLFFISSTGQTDSSSWLLHSSHLPSHLTSPRPRSPLLL
LHLLSSTPEVTLCLPKKNYSKIIATSSGILFRMCHSITMYDFVCCSYCYC
CCRWNLSNSLLVLQQLLPLPLLLLVLLLLLLLLLLLPPPLRELAVGSTLA
ALSSTNARTEM*

mRNA from alignment at scaffold_12:736017..737253-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5206 ID=mRNA_5206|Name=jgi.p|Nanoce1779_2|591743|organism=Nannochloropsis oceanica|type=mRNA|length=1237bp|location=Sequence derived from alignment at scaffold_12:736017..737253- (Nannochloropsis oceanica)
TAACGGGCGGGCGAGCGGCCGATCTCGATCTGGCACGTACGTACACCTTA
CCAAGCGTGTGTCAAACTTTTCGAGCTTGTTCCGTAGGCTGCAGGATACC
ATGAGAAGGCAATTCAAGCGATTTGATCGTTTCTTGTTATATGTATGCTA
TGGTGTTTGTTTTGTCGTTCCCCACCAAAATCTTCTCTTGGTTGTAAACA
CTCCCTGCGCCCCCTTGACTAGTTTAGTCGTCCCCCTCCTCAAACGTTGC
GGCTCATTTTACTTTTGCTTGGATTTCTCTGGTATTCACATCTATAAGTG
ACAACTAGTGCTCCTAGTCCTTTTTATTACCTGAATTCTCTCTTTCTACT
CTTCGCAAAAGACCGTCTCCCTTCGTTCAAGTTAGCCACACTCTTGTTCT
CCTATCGAGCAGCCTCTTGTCTTACCTCCACACATCAGTCTTCCCTTCAC
CCTCTTCGAATTTGTATTCGTGCAGCCTTATCGATGTCATATCTTAAATA
TAAAATTTACGATCTTTATGCTTATAAACAGGATATCGAACCTCTCTCCT
TCCCCCCTCTTCTTTATTTCATCCACAGGTCAGACAGATTCGTCCAGTTG
GCTTCTTCATTCTTCACACCTTCCTTCCCACCTCACATCCCCTCGCCCAC
GATCTCCTCTTTTACTGCTTCATCTTCTATCATCTACGCCCGAGGTCACT
TTGTGCCTCCCAAAAAAAAACTACAGCAAGATTATCGCCACGAGCAGCGG
CATTCTTTTTCGGATGTGCCACAGTATCACCATGTACGACTTTGTCTGCT
GCTCCTATTGTTACTGCTGTTGTCGCTGGAACCTTAGCAATTCGTTGCTA
GTGCTGCAGCAGCTGCTGCCGTTGCCACTGCTGCTGTTGGTGCTATTGTT
GTTGCTGCTGCTACTGCTGCTGCTGCCACCGCCGTTGCGGGAGCTGGCGG
TCGGCTCTACTCTAGCTGCTCTTTCTTCGACAAATGCAAGGACTGAGATG
TAGAAACTACATAATAAGGAACAGGAGGAGGTGAAAGAGCCGGGGCAGGA
GCAGGAGGAAAAAGCGGACGAAGACCCAGATTTCCCTCTCCATTCACTCC
TCCTCCCACGCCTCCTCCCCCCGTCTCGGTCCCCAACAGTCGTTTAAATG
GCTGACTCTGCTGCGGCTGTAGCTGCTGCTGCTGCTGCTGCTGTAGCTGC
TGCTGCTATAGCTGCTGCTGCTATAGCTGCTGCTGCT

Coding sequence (CDS) from alignment at scaffold_12:736017..737253-

>mRNA_5206 ID=mRNA_5206|Name=jgi.p|Nanoce1779_2|591743|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_12:736017..737253- (Nannochloropsis oceanica)
ATGCTTATAAACAGGATATCGAACCTCTCTCCTTCCCCCCTCTTCTTTAT
TTCATCCACAGGTCAGACAGATTCGTCCAGTTGGCTTCTTCATTCTTCAC
ACCTTCCTTCCCACCTCACATCCCCTCGCCCACGATCTCCTCTTTTACTG
CTTCATCTTCTATCATCTACGCCCGAGGTCACTTTGTGCCTCCCAAAAAA
AAACTACAGCAAGATTATCGCCACGAGCAGCGGCATTCTTTTTCGGATGT
GCCACAGTATCACCATGTACGACTTTGTCTGCTGCTCCTATTGTTACTGC
TGTTGTCGCTGGAACCTTAGCAATTCGTTGCTAGTGCTGCAGCAGCTGCT
GCCGTTGCCACTGCTGCTGTTGGTGCTATTGTTGTTGCTGCTGCTACTGC
TGCTGCTGCCACCGCCGTTGCGGGAGCTGGCGGTCGGCTCTACTCTAGCT
GCTCTTTCTTCGACAAATGCAAGGACTGAGATGTAG

Synonyms

Publications