jgi.p|Nanoce1779_2|591741, mRNA_5205 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591741
Unique NamemRNA_5205
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length918
Alignment locationscaffold_12:735156..736073 +

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Properties
Property NameValue
TranscriptId591827
TrackFilteredModels2
ProteinId591741
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:735156..736073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591741gene_5205Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591741mRNA_5205-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5205CDS_5205Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5205 ID=mRNA_5205|Name=jgi.p|Nanoce1779_2|591741|organism=Nannochloropsis oceanica|type=mRNA|length=918bp
CGGGAACACAAGCAAGGCTGGCGGAGCTGGGGGTTAAGATGGGGGAGGGA
GGGAGGGAGGAAGGGACGGAGGGTGTGGTGGATTTTGGGAAAATTCCGCC
GAGACTGTCGGCGCTGGACGACAGGGTGTCGGCATGTGCGTGTACAGTGC
ACCTCCATGGAGCTGCTTGTCGGGTGCTGGTTAACCAGCAATTCAAGGAC
TTATTTGGCTCCGCGTCTGAGCTGCTAGAGCGGATGCAGAACGAGAATAT
GGCCCCGCCCTTGCTCTACGCCTTGATGGTGGCCGCGGAAGACAGGCTCG
ATTTTTTGGAGGCCATGACCAAGTATCTCTTCGGGCGTACTAAAGAGATG
GAGCTCAGCCAAATTGTCAAGGTACGGGATAGCATCGATGTGGCCTTCTT
GGCAGTCATCCGCCTTCGTGTTCTTGCCCTTGCAGGTGGTGCCTATCTCG
CAACCATGCTCTCCGTCGCCCCTGCCCCCTCCTCGAAGTACATCCGGGGA
GGGAATTGGGAGGGTCCACCGGAGGGAGGATTGACATGGCTAGGCTTGAA
TAAAGCGGAGGAAAAATTTAGATTGAGGCCCCCAGCGCCGCCCCTGACAC
CCAGGGGTGATGCGGGGAAAGAGTTTGAGACCTGTAATGTGGAAATGGCG
CGAGTGAGGGAGTTTGTGAGTGCGCAACAGGCAGCTCTTGGTGCCGCCGA
ACGAGGAAGAGATAGAGGGAGGGATGGAGGCATGGGACAAGGGATGGGAG
AAGGAAGATTGATGACGAATCCAGCGCCTTTGGTGCCGTCGACTGTGCAG
CAACCGCTTTGTGTGCTGCAACACAGTCACCAGCTACAGCAGCAGCAGCA
GCTACAGCAGCAGCAGCAGCAGCTATAGCAGCAGCAGCTATAGCAGCAGC
AGCTACAGCAGCAGCAGC
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protein sequence of jgi.p|Nanoce1779_2|591741

>mRNA_5205-protein ID=mRNA_5205-protein|Name=jgi.p|Nanoce1779_2|591741|organism=Nannochloropsis oceanica|type=polypeptide|length=280bp
MGEGGREEGTEGVVDFGKIPPRLSALDDRVSACACTVHLHGAACRVLVNQ
QFKDLFGSASELLERMQNENMAPPLLYALMVAAEDRLDFLEAMTKYLFGR
TKEMELSQIVKVRDSIDVAFLAVIRLRVLALAGGAYLATMLSVAPAPSSK
YIRGGNWEGPPEGGLTWLGLNKAEEKFRLRPPAPPLTPRGDAGKEFETCN
VEMARVREFVSAQQAALGAAERGRDRGRDGGMGQGMGEGRLMTNPAPLVP
STVQQPLCVLQHSHQLQQQQQLQQQQQQL*
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mRNA from alignment at scaffold_12:735156..736073+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5205 ID=mRNA_5205|Name=jgi.p|Nanoce1779_2|591741|organism=Nannochloropsis oceanica|type=mRNA|length=918bp|location=Sequence derived from alignment at scaffold_12:735156..736073+ (Nannochloropsis oceanica)
CGGGAACACAAGCAAGGCTGGCGGAGCTGGGGGTTAAGATGGGGGAGGGA
GGGAGGGAGGAAGGGACGGAGGGTGTGGTGGATTTTGGGAAAATTCCGCC
GAGACTGTCGGCGCTGGACGACAGGGTGTCGGCATGTGCGTGTACAGTGC
ACCTCCATGGAGCTGCTTGTCGGGTGCTGGTTAACCAGCAATTCAAGGAC
TTATTTGGCTCCGCGTCTGAGCTGCTAGAGCGGATGCAGAACGAGAATAT
GGCCCCGCCCTTGCTCTACGCCTTGATGGTGGCCGCGGAAGACAGGCTCG
ATTTTTTGGAGGCCATGACCAAGTATCTCTTCGGGCGTACTAAAGAGATG
GAGCTCAGCCAAATTGTCAAGGTACGGGATAGCATCGATGTGGCCTTCTT
GGCAGTCATCCGCCTTCGTGTTCTTGCCCTTGCAGGTGGTGCCTATCTCG
CAACCATGCTCTCCGTCGCCCCTGCCCCCTCCTCGAAGTACATCCGGGGA
GGGAATTGGGAGGGTCCACCGGAGGGAGGATTGACATGGCTAGGCTTGAA
TAAAGCGGAGGAAAAATTTAGATTGAGGCCCCCAGCGCCGCCCCTGACAC
CCAGGGGTGATGCGGGGAAAGAGTTTGAGACCTGTAATGTGGAAATGGCG
CGAGTGAGGGAGTTTGTGAGTGCGCAACAGGCAGCTCTTGGTGCCGCCGA
ACGAGGAAGAGATAGAGGGAGGGATGGAGGCATGGGACAAGGGATGGGAG
AAGGAAGATTGATGACGAATCCAGCGCCTTTGGTGCCGTCGACTGTGCAG
CAACCGCTTTGTGTGCTGCAACACAGTCACCAGCTACAGCAGCAGCAGCA
GCTACAGCAGCAGCAGCAGCAGCTATAGCAGCAGCAGCTATAGCAGCAGC
AGCTACAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at scaffold_12:735156..736073+

>mRNA_5205 ID=mRNA_5205|Name=jgi.p|Nanoce1779_2|591741|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_12:735156..736073+ (Nannochloropsis oceanica)
ATGGGGGAGGGAGGGAGGGAGGAAGGGACGGAGGGTGTGGTGGATTTTGG
GAAAATTCCGCCGAGACTGTCGGCGCTGGACGACAGGGTGTCGGCATGTG
CGTGTACAGTGCACCTCCATGGAGCTGCTTGTCGGGTGCTGGTTAACCAG
CAATTCAAGGACTTATTTGGCTCCGCGTCTGAGCTGCTAGAGCGGATGCA
GAACGAGAATATGGCCCCGCCCTTGCTCTACGCCTTGATGGTGGCCGCGG
AAGACAGGCTCGATTTTTTGGAGGCCATGACCAAGTATCTCTTCGGGCGT
ACTAAAGAGATGGAGCTCAGCCAAATTGTCAAGGTACGGGATAGCATCGA
TGTGGCCTTCTTGGCAGTCATCCGCCTTCGTGTTCTTGCCCTTGCAGGTG
GTGCCTATCTCGCAACCATGCTCTCCGTCGCCCCTGCCCCCTCCTCGAAG
TACATCCGGGGAGGGAATTGGGAGGGTCCACCGGAGGGAGGATTGACATG
GCTAGGCTTGAATAAAGCGGAGGAAAAATTTAGATTGAGGCCCCCAGCGC
CGCCCCTGACACCCAGGGGTGATGCGGGGAAAGAGTTTGAGACCTGTAAT
GTGGAAATGGCGCGAGTGAGGGAGTTTGTGAGTGCGCAACAGGCAGCTCT
TGGTGCCGCCGAACGAGGAAGAGATAGAGGGAGGGATGGAGGCATGGGAC
AAGGGATGGGAGAAGGAAGATTGATGACGAATCCAGCGCCTTTGGTGCCG
TCGACTGTGCAGCAACCGCTTTGTGTGCTGCAACACAGTCACCAGCTACA
GCAGCAGCAGCAGCTACAGCAGCAGCAGCAGCAGCTATAG
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Synonyms
Publications