jgi.p|Nanoce1779_2|58673, mRNA_5204 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|58673
Unique NamemRNA_5204
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1443
Alignment locationscaffold_12:731673..733341 -

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Properties
Property NameValue
TranscriptId58759
TrackFilteredModels2
ProteinId58673
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:731673..733341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|58673gene_5204Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|58673mRNA_5204-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5204CDS_5204Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5204 ID=mRNA_5204|Name=jgi.p|Nanoce1779_2|58673|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp
TGTTCGCCGGGCGTTTGTTCGTAATTCTGTCATCGCCACACCGCTTCGTC
GAACCCACACAAACATCTAAGGCAAGAGCAGTAGCAGGAGCAAGCTAGCA
AAATGGAGGAGGAAGACGAGTGGAGCATCACGTCCTTAGTCGGGGACGGC
AGCAACATCACGAACAGCACCAGCAGCACAAGCACAAGCATCAACCGCTA
CTCGGTCCTGTGGGGGTTAGCCTTGACGGGGTTTAGCCTGACCCTTCTTG
TTGCTCTCCCTTACCTGGTATGTCTCTTGGCCAGGCCCCCATCCAAAATA
CGAAGATTCTATTTCGCTGCTGTGCTGCTGCCCTTGGTTTTCGCCGTATC
GGCCTTGGCGACTTGCTTGGCCCCGCGTAGTGATGATTACTGGGGGTTGC
TTCAGCATGTGTGCGAAGCATGGGCATTGCATAGTCTAAACCAGCTCATC
GTGGAGCGCCTGGGCGGTAAGACAACCACCCTCGCCAAGCTCCGCGCTCG
CGGCAATCAGCAATGGTTAAGGGCTCCGCCCCTCTGTTGCTTCTGCTGGT
GTCTTCCTTCCACGCCATTTACCGAGGACACCCTTTACCTAGTCCTGGCC
TTGACGCGTCAGTTTATTTTTAGCACCCCCGCGATTTCCCTCCTCGCCGT
CCTCCTCTCCTTCACCTCTTCCTCCTCCTCTTCCTCCTCCAGCACCGACA
GGCAGACGCCTCTGTGGCACCTGCTTCGTTTCCTCCTACTCGCTTCCTCC
CTCCTGGCTTTGTGGGGGCTCTTTATCCTCTACAAGGCTTCCTTGGACGA
TGTCTCACGCCAGCATCAGATCACCTTGAAATTCATCTCAATCAAATTGT
TGATTATCGTGGGGATTGTCCAAGAGTATGTCTTTGCGGAGCTTGCCTGG
AGGAAGGAGGGAGGGGGAAAAGGAGAGGGGCAGGGAGACGGGGAGAGTCT
GAGTGTGCTTGTCCCAAATGCGTTGCTGGCCTCGGAGTCCCCGCTGCTGA
CATTGTTGGTGCTATGTGCTTTTCCGTTGCGCGAGCTAGAGCCGTCTTTC
CAACGATCGCCACGGCATCATCAGTTGCGGCAGCAGCAGCAGCAGAGCGA
TTCGTTCGTATCATATCCTTTCTTGTCGTGGTTGAAGCTGCATAAAGACC
ATAGGACAGGGCGTTCAGTGAGTGCCACCTCACCCTTACTAAGCCTCAGT
CGTAGTGGGGAGGGAGGTAATGGATGGAGGAGGGAAGGAAGGGTGGGAGA
AGAGGAGGAGCCGGAGGAGAAGGAAGAAGAGAAGAAGGAAGAAGATGTAG
GGGTTGGGGAGTTGCTGTTTACGAGTCGAGGGAACAGTTTGCGAGGGAGC
GAACGGTCGCCCACGCCCTTGACGGAGACTGAGGAAGTGGTGTGATTAGC
TAAGGAGAAAAAATGAGACGGGAAAAATGACTGACTTACAATT
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protein sequence of jgi.p|Nanoce1779_2|58673

>mRNA_5204-protein ID=mRNA_5204-protein|Name=jgi.p|Nanoce1779_2|58673|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MEEEDEWSITSLVGDGSNITNSTSSTSTSINRYSVLWGLALTGFSLTLLV
ALPYLVCLLARPPSKIRRFYFAAVLLPLVFAVSALATCLAPRSDDYWGLL
QHVCEAWALHSLNQLIVERLGGKTTTLAKLRARGNQQWLRAPPLCCFCWC
LPSTPFTEDTLYLVLALTRQFIFSTPAISLLAVLLSFTSSSSSSSSSTDR
QTPLWHLLRFLLLASSLLALWGLFILYKASLDDVSRQHQITLKFISIKLL
IIVGIVQEYVFAELAWRKEGGGKGEGQGDGESLSVLVPNALLASESPLLT
LLVLCAFPLRELEPSFQRSPRHHQLRQQQQQSDSFVSYPFLSWLKLHKDH
RTGRSVSATSPLLSLSRSGEGGNGWRREGRVGEEEEPEEKEEEKKEEDVG
VGELLFTSRGNSLRGSERSPTPLTETEEVV*
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mRNA from alignment at scaffold_12:731673..733341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5204 ID=mRNA_5204|Name=jgi.p|Nanoce1779_2|58673|organism=Nannochloropsis oceanica|type=mRNA|length=1669bp|location=Sequence derived from alignment at scaffold_12:731673..733341- (Nannochloropsis oceanica)
TGTTCGCCGGGCGTTTGTTCGTAATTCTGTCATCGCCACACCGCTTCGTC
GAACCCACACAAACATCTAAGGCAAGAGCAGTAGCAGGAGCAAGCTAGCA
AAATGGAGGAGGAAGACGAGTGGAGCATCACGTCCTTAGTCGGGGACGGC
AGCAACATCACGAACAGCACCAGCAGCACAAGCACAAGCATCAACCGCTA
CTCGGTCCTGTGGGGGTTAGCCTTGACGGGGTTTAGCCTGACCCTTCTTG
TTGCTCTCCCTTACCTGGTATGTCTCTTGGCCAGGCCCCCATCCAAAATA
CGAAGATTCTATTTCGCTGCTGTGCTGCTGCCCTTGGTTTTCGCCGTATC
GGCCTTGGCGACTTGCTTGGCCCCGCGTAGTGATGATTACTGGGGGTTGC
TTCAGCATGTGTGCGAAGCATGGGCATTGCATAGTCTAAACCAGGTAGCG
TACGGGACATGGAATGAATTTGAAATTGCTGGTGTGTGCGGGGTTTGGAG
TTGGGTGTTTGCGGGAGGAAGTCGAACCAGGAGCAGTACAAGACAAATTG
AACATCGCTGGGAGACTTTTCAATAGCCCTTATGCGGGGCTATTTTCCCT
CTTTGTCGGGTGTCCAGACTCTCGCATTTTCTCTTTGGTCATCAACCTTC
ACCCATACATCTACACACAGCTCATCGTGGAGCGCCTGGGCGGTAAGACA
ACCACCCTCGCCAAGCTCCGCGCTCGCGGCAATCAGCAATGGTTAAGGGC
TCCGCCCCTCTGTTGCTTCTGCTGGTGTCTTCCTTCCACGCCATTTACCG
AGGACACCCTTTACCTAGTCCTGGCCTTGACGCGTCAGTTTATTTTTAGC
ACCCCCGCGATTTCCCTCCTCGCCGTCCTCCTCTCCTTCACCTCTTCCTC
CTCCTCTTCCTCCTCCAGCACCGACAGGCAGACGCCTCTGTGGCACCTGC
TTCGTTTCCTCCTACTCGCTTCCTCCCTCCTGGCTTTGTGGGGGCTCTTT
ATCCTCTACAAGGCTTCCTTGGACGATGTCTCACGCCAGCATCAGATCAC
CTTGAAATTCATCTCAATCAAATTGTTGATTATCGTGGGGATTGTCCAAG
AGTATGTCTTTGCGGAGCTTGCCTGGAGGAAGGAGGGAGGGGGAAAAGGA
GAGGGGCAGGGAGACGGGGAGAGTCTGAGTGTGCTTGTCCCAAATGCGTT
GCTGGCCTCGGAGTCCCCGCTGCTGACATTGTTGGTGCTATGTGCTTTTC
CGTTGCGCGAGCTAGAGCCGTCTTTCCAACGATCGCCACGGCATCATCAG
TTGCGGCAGCAGCAGCAGCAGAGCGATTCGTTCGTATCATATCCTTTCTT
GTCGTGGTTGAAGCTGCATAAAGACCATAGGACAGGGCGTTCAGTGAGTG
CCACCTCACCCTTACTAAGCCTCAGTCGTAGTGGGGAGGGAGGTAATGGA
TGGAGGAGGGAAGGAAGGGTGGGAGAAGAGGAGGAGCCGGAGGAGAAGGA
AGAAGAGAAGAAGGAAGAAGATGTAGGGGTTGGGGAGTTGCTGTTTACGA
GTCGAGGGAACAGTTTGCGAGGGAGCGAACGGTCGCCCACGCCCTTGACG
GAGACTGAGGAAGTGGTGTGATTAGCTAAGGAGAAAAAATGAGACGGGAA
AAATGACTGACTTACAATT
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Coding sequence (CDS) from alignment at scaffold_12:731673..733341-

>mRNA_5204 ID=mRNA_5204|Name=jgi.p|Nanoce1779_2|58673|organism=Nannochloropsis oceanica|type=CDS|length=2586bp|location=Sequence derived from alignment at scaffold_12:731673..733341- (Nannochloropsis oceanica)
CTCATCGTGGAGCGCCTGGGCGGTAAGACAACCACCCTCGCCAAGCTCCG
CGCTCGCGGCAATCAGCAATGGTTAAGGGCTCCGCCCCTCTGTTGCTTCT
GCTGGTGTCTTCCTTCCACGCCATTTACCGAGGACACCCTTTACCTAGTC
CTGGCCTTGACGCGTCAGTTTATTTTTAGCACCCCCGCGATTTCCCTCCT
CGCCGTCCTCCTCTCCTTCACCTCTTCCTCCTCCTCTTCCTCCTCCAGCA
CCGACAGGCAGACGCCTCTGTGGCACCTGCTTCGTTTCCTCCTACTCGCT
TCCTCCCTCCTGGCTTTGTGGGGGCTCTTTATCCTCTACAAGGCTTCCTT
GGACGATGTCTCACGCCAGCATCAGATCACCTTGAAATTCATCTCAATCA
AATTGTTGATTATCGTGGGGATTGTCCAAGAGTATGTCTTTGCGGAGCTT
GCCTGGAGGAAGGAGGGAGGGGGAAAAGGAGAGGGGCAGGGAGACGGGGA
GAGTCTGAGTGTGCTTGTCCCAAATGCGTTGCTGGCCTCGGAGTCCCCGC
TGCTGACATTGTTGGTGCTATGTGCTTTTCCGTTGCGCGAGCTAGAGCCG
TCTTTCCAACGATCGCCACGGCATCATCAGTTGCGGCAGCAGCAGCAGCA
GAGCGATTCGTTCGTATCATATCCTTTCTTGTCGTGGTTGAAGCTGCATA
AAGACCATAGGACAGGGCGTTCAGTGAGTGCCACCTCACCCTTACTAAGC
CTCAGTCGTAGTGGGGAGGGAGGTAATGGATGGAGGAGGGAAGGAAGGGT
GGGAGAAGAGGAGGAGCCGGAGGAGAAGGAAGAAGAGAAGAAGGAAGAAG
ATGTAGGGGTTGGGGAGTTGCTGTTTACGAGTCGAGGGAACAGTTTGCGA
GGGAGCGAACGGTCGCCCACGCCCTTGACGGAGACTGAGGAAGTGGTGTG
AATGGAGGAGGAAGACGAGTGGAGCATCACGTCCTTAGTCGGGGACGGCA
GCAACATCACGAACAGCACCAGCAGCACAAGCACAAGCATCAACCGCTAC
TCGGTCCTGTGGGGGTTAGCCTTGACGGGGTTTAGCCTGACCCTTCTTGT
TGCTCTCCCTTACCTGGTATGTCTCTTGGCCAGGCCCCCATCCAAAATAC
GAAGATTCTATTTCGCTGCTGTGCTGCTGCCCTTGGTTTTCGCCGTATCG
GCCTTGGCGACTTGCTTGGCCCCGCGTAGTGATGATTACTGGGGGTTGCT
TCAGCATGTGTGCGAAGCATGGGCATTGCATAGTCTAAACCAGCTCATCG
TGGAGCGCCTGGGCGGTAAGACAACCACCCTCGCCAAGCTCCGCGCTCGC
GGCAATCAGCAATGGTTAAGGGCTCCGCCCCTCTGTTGCTTCTGCTGGTG
TCTTCCTTCCACGCCATTTACCGAGGACACCCTTTACCTAGTCCTGGCCT
TGACGCGTCAGTTTATTTTTAGCACCCCCGCGATTTCCCTCCTCGCCGTC
CTCCTCTCCTTCACCTCTTCCTCCTCCTCTTCCTCCTCCAGCACCGACAG
GCAGACGCCTCTGTGGCACCTGCTTCGTTTCCTCCTACTCGCTTCCTCCC
TCCTGGCTTTGTGGGGGCTCTTTATCCTCTACAAGGCTTCCTTGGACGAT
GTCTCACGCCAGCATCAGATCACCTTGAAATTCATCTCAATCAAATTGTT
GATTATCGTGGGGATTGTCCAAGAGTATGTCTTTGCGGAGCTTGCCTGGA
GGAAGGAGGGAGGGGGAAAAGGAGAGGGGCAGGGAGACGGGGAGAGTCTG
AGTGTGCTTGTCCCAAATGCGTTGCTGGCCTCGGAGTCCCCGCTGCTGAC
ATTGTTGGTGCTATGTGCTTTTCCGTTGCGCGAGCTAGAGCCGTCTTTCC
AACGATCGCCACGGCATCATCAGTTGCGGCAGCAGCAGCAGCAGAGCGAT
TCGTTCGTATCATATCCTTTCTTGTCGTGGTTGAAGCTGCATAAAGACCA
TAGGACAGGGCGTTCAGTGAGTGCCACCTCACCCTTACTAAGCCTCAGTC
GTAGTGGGGAGGGAGGTAATGGATGGAGGAGGGAAGGAAGGGTGGGAGAA
GAGGAGGAGCCGGAGGAGAAGGAAGAAGAGAAGAAGGAAGAAGATGTAGG
GGTTGGGGAGTTGCTGTTTACGAGTCGAGGGAACAGTTTGCGAGGGAGCG
AACGGTCGCCCACGCCCTTGACGGAGACTGAGGAAGTGGTGTGAATGGAG
GAGGAAGACGAGTGGAGCATCACGTCCTTAGTCGGGGACGGCAGCAACAT
CACGAACAGCACCAGCAGCACAAGCACAAGCATCAACCGCTACTCGGTCC
TGTGGGGGTTAGCCTTGACGGGGTTTAGCCTGACCCTTCTTGTTGCTCTC
CCTTACCTGGTATGTCTCTTGGCCAGGCCCCCATCCAAAATACGAAGATT
CTATTTCGCTGCTGTGCTGCTGCCCTTGGTTTTCGCCGTATCGGCCTTGG
CGACTTGCTTGGCCCCGCGTAGTGATGATTACTGGGGGTTGCTTCAGCAT
GTGTGCGAAGCATGGGCATTGCATAGTCTAAACCAG
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Synonyms
Publications