jgi.p|Nanoce1779_2|591729, mRNA_5203 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591729
Unique Name	mRNA_5203
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	825
Alignment location	scaffold_12:729678..731116 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591815
Track	FilteredModels2
ProteinId	591729

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:729678..731116 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591729	gene_5203	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591729	mRNA_5203-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5203	CDS_5203	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:729678..731116+
coding sequence from alignment at scaffold_12:729678..731116+

mRNA sequence

>mRNA_5203 ID=mRNA_5203|Name=jgi.p|Nanoce1779_2|591729|organism=Nannochloropsis oceanica|type=mRNA|length=825bp
AAAAAGAACAGACTACACACCTACGCAACGCATGGTGCTCAGTCACGTCA
CGGCCCTCGTCACCGGCGCGGCTTCGGGCCTGGGCCAAGCCACAGCCCTG
CGCTTCTTACAACAGGGAGCTCGCGTTGTGCTGGCAGATTTACCGGCCAC
CAAGCCTGCGGCATTGGCCTCTCTCCAAGAGCTTGACCAGGACATGCGGG
CTCGCGGCGTTTTCGCGGGAGTCGATGTCCTCGACAGCTCCCTTGTCTCG
GCGGGGCTGGATAGAGCTTCATCCCAATGGGGACAGACAGTGAATGTCGT
GGTTAACTGCGCAGGTATCGCCGTGGCCCAACGCGTACTTGGAAAGAAGG
GGCCGCATTCCTTAGAGGCTTTTCTCAAGGTTTTGTCGGTGAATGCCGGA
GGTACTTTCAACGTCACCCGCCTCGCCGCAGAGAGAATGAGCACTCAAGT
CCCAGACAGCAACGGTATTCGCGGGGTCGTCGTTACCACGGCCAGCATCG
CCGCCTTTGACGGTCAAATCGGCCAGGCTGCCTACGCCGCCTCCAAGGCC
GCTGTTGCCGGTCTAACCCTCCCCCTTGCGCGTGATCTGTCTAGGGATGG
CGTGAGGGTCGTCTCGATCGCGCCTGGATTATTCAAGACCCCAATGCTGG
CAGCCCTGCCAGAACAGGTCCAGAAAGAGCTAGGGAGAACTGTACCGTTG
CCTAACAGGCTGGGGGATCCGTCGGAATTTGCAATGCTGGTGCAGTCTAT
CGTGGAGAATCCCATGATTAATGGGGAGGTGATCCGGTTGGATGGGGCGT
TGCGGATGCCGCCATCTTGAGGGGG

protein sequence of jgi.p|Nanoce1779_2|591729

>mRNA_5203-protein ID=mRNA_5203-protein|Name=jgi.p|Nanoce1779_2|591729|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MVLSHVTALVTGAASGLGQATALRFLQQGARVVLADLPATKPAALASLQE
LDQDMRARGVFAGVDVLDSSLVSAGLDRASSQWGQTVNVVVNCAGIAVAQ
RVLGKKGPHSLEAFLKVLSVNAGGTFNVTRLAAERMSTQVPDSNGIRGVV
VTTASIAAFDGQIGQAAYAASKAAVAGLTLPLARDLSRDGVRVVSIAPGL
FKTPMLAALPEQVQKELGRTVPLPNRLGDPSEFAMLVQSIVENPMINGEV
IRLDGALRMPPS*

mRNA from alignment at scaffold_12:729678..731116+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5203 ID=mRNA_5203|Name=jgi.p|Nanoce1779_2|591729|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp|location=Sequence derived from alignment at scaffold_12:729678..731116+ (Nannochloropsis oceanica)
AAAAAGAACAGACTACACACCTACGCAACGCATGGTGCTCAGTCACGTCA
CGGCCCTCGTCACCGGCGCGGCTTCGGGCCTGGGCCAAGCCACAGCCCTG
CGCTTCTTACAACAGGTAGGCCTCTTTTCCACCTGGCTCCCCTTGCTCTC
CTTTCCTCGCTACATGCTCTGTACACACGACACATGGATCCCCCTGACCC
CCTATGGTTCCTCAGTCAAGTTCGAGGGGAAACTCACTCCAACCTACCAT
GACACCAAAAAGGGAGCTCGCGTTGTGCTGGCAGATTTACCGGCCACCAA
GCCTGCGGCATTGGCCTCTCTCCAAGAGCTTGACCAGGACATGCGGGCTC
GCGGCGTTTTCGCGGGAGTCGATGTATGTGTTGGGCCGGTGAAAGTTTGT
TGTGAGCGTGCGTATGTTGTTCCCCTTTCACCTGCTCTCTCCATGCCATT
GCTATGCGGATATCCACAACCCAACCACCTCCCAATTCTCTTCGTCATCC
TCCTTCCCCCGCACCTCCTCATTTCGTCCATCCTTTCCCACTGACAGGTC
CTCGACAGCTCCCTTGTCTCGGCGGGGCTGGATAGAGCTTCATCCCAATG
GGGACAGACAGTGAATGTCGTGGTTAACTGCGCAGGTATCGCCGTGGCCC
AACGCGTACTTGGAAAGAAGGGGCCGCATTCCTTAGAGGCTTTTCTCAAG
GTCAGTACGGTGGCGGAGGCAGGAGGGAGCGGAGGAAGAGTTTCAGCGTT
ACACACGCGCACACAAGACAATGAGAGGTCTTGTTTTCATACTTCATGAT
ACTTACCTCTTTTCATCCTCTTCCTTCTCATCCTCATCCTTCTCCTCTCC
CTCCTCGTTGCCCACTAAATGATTTTCTTCTTTTACCTCCTCCTCTCGCG
ATAGGTTTTGTCGGTGAATGCCGGAGGTACTTTCAACGTCACCCGCCTCG
CCGCAGAGAGGTAACGACCAAGTCTGTCTCGCACTCCTTCCATCCCCCCC
TTTCTTTCCTCCCCCCTAATTCACCTCCTTTCCCTCCACATTCCCCAAGA
ATGAGCACTCAAGTCCCAGACAGCAACGGTATTCGCGGGGTCGTCGTTAC
CACGGCCAGCATCGCCGCCTTTGACGGTCAAATCGGCCAGGCTGCCTACG
CCGCCTCCAAGGCCGCTGTTGCCGGTCTAACCCTCCCCCTTGCGCGTGAT
CTGTCTAGGGATGGCGTGAGGGTCGTCTCGATCGCGCCTGGATTATTCAA
GACCCCAATGCTGGCAGCCCTGCCAGAACAGGTCCAGAAAGAGCTAGGGA
GAACTGTACCGTTGCCTAACAGGCTGGGGGATCCGTCGGAATTTGCAATG
CTGGTGCAGTCTATCGTGGAGAATCCCATGATTAATGGGGAGGTGATCCG
GTTGGATGGGGCGTTGCGGATGCCGCCATCTTGAGGGGG

Coding sequence (CDS) from alignment at scaffold_12:729678..731116+

>mRNA_5203 ID=mRNA_5203|Name=jgi.p|Nanoce1779_2|591729|organism=Nannochloropsis oceanica|type=CDS|length=3945bp|location=Sequence derived from alignment at scaffold_12:729678..731116+ (Nannochloropsis oceanica)
ATGGTGCTCAGTCACGTCACGGCCCTCGTCACCGGCGCGGCTTCGGGCCT
GGGCCAAGCCACAGCCCTGCGCTTCTTACAACAGGGAGCTCGCGTTGTGC
TGGCAGATTTACCGGCCACCAAGCCTGCGGCATTGGCCTCTCTCCAAGAG
CTTGACCAGGACATGCGGGCTCGCGGCGTTTTCGCGGGAGTCGATGTCCT
CGACAGCTCCCTTGTCTCGGCGGGGCTGGATAGAGCTTCATCCCAATGGG
GACAGACAGTGAATGTCGTGGTTAACTGCGCAGGTATCGCCGTGGCCCAA
CGCGTACTTGGAAAGAAGGGGCCGCATTCCTTAGAGGCTTTTCTCAAGGT
TTTGTCGGTGAATGCCGGAGGTACTTTCAACGTCACCCGCCTCGCCGCAG
AGAGAATGAGCACTCAAGTCCCAGACAGCAACGGTATTCGCGGGGTCGTC
GTTACCACGGCCAGCATCGCCGCCTTTGACGGTCAAATCGGCCAGGCTGC
CTACGCCGCCTCCAAGGCCGCTGTTGCCGGTCTAACCCTCCCCCTTGCGC
GTGATCTGTCTAGGGATGGCGTGAGGGTCGTCTCGATCGCGCCTGGATTA
TTCAAGACCCCAATGCTGGCAGCCCTGCCAGAACAGGTCCAGAAAGAGCT
AGGGAGAACTGTACCGTTGCCTAACAGGCTGGGGGATCCGTCGGAATTTG
CAATGCTGGTGCAGTCTATCGTGGAGAATCCCATGATTAATGGGGAGGTG
ATCCGGTTGGATGGGGCGTTGCGGATGCCGCCATCTTGAATGGTGCTCAG
TCACGTCACGGCCCTCGTCACCGGCGCGGCTTCGGGCCTGGGCCAAGCCA
CAGCCCTGCGCTTCTTACAACAGGGAGCTCGCGTTGTGCTGGCAGATTTA
CCGGCCACCAAGCCTGCGGCATTGGCCTCTCTCCAAGAGCTTGACCAGGA
CATGCGGGCTCGCGGCGTTTTCGCGGGAGTCGATGTCCTCGACAGCTCCC
TTGTCTCGGCGGGGCTGGATAGAGCTTCATCCCAATGGGGACAGACAGTG
AATGTCGTGGTTAACTGCGCAGGTATCGCCGTGGCCCAACGCGTACTTGG
AAAGAAGGGGCCGCATTCCTTAGAGGCTTTTCTCAAGGTTTTGTCGGTGA
ATGCCGGAGGTACTTTCAACGTCACCCGCCTCGCCGCAGAGAGAATGAGC
ACTCAAGTCCCAGACAGCAACGGTATTCGCGGGGTCGTCGTTACCACGGC
CAGCATCGCCGCCTTTGACGGTCAAATCGGCCAGGCTGCCTACGCCGCCT
CCAAGGCCGCTGTTGCCGGTCTAACCCTCCCCCTTGCGCGTGATCTGTCT
AGGGATGGCGTGAGGGTCGTCTCGATCGCGCCTGGATTATTCAAGACCCC
AATGCTGGCAGCCCTGCCAGAACAGGTCCAGAAAGAGCTAGGGAGAACTG
TACCGTTGCCTAACAGGCTGGGGGATCCGTCGGAATTTGCAATGCTGGTG
CAGTCTATCGTGGAGAATCCCATGATTAATGGGGAGGTGATCCGGTTGGA
TGGGGCGTTGCGGATGCCGCCATCTTGAATGGTGCTCAGTCACGTCACGG
CCCTCGTCACCGGCGCGGCTTCGGGCCTGGGCCAAGCCACAGCCCTGCGC
TTCTTACAACAGGGAGCTCGCGTTGTGCTGGCAGATTTACCGGCCACCAA
GCCTGCGGCATTGGCCTCTCTCCAAGAGCTTGACCAGGACATGCGGGCTC
GCGGCGTTTTCGCGGGAGTCGATGTCCTCGACAGCTCCCTTGTCTCGGCG
GGGCTGGATAGAGCTTCATCCCAATGGGGACAGACAGTGAATGTCGTGGT
TAACTGCGCAGGTATCGCCGTGGCCCAACGCGTACTTGGAAAGAAGGGGC
CGCATTCCTTAGAGGCTTTTCTCAAGGTTTTGTCGGTGAATGCCGGAGGT
ACTTTCAACGTCACCCGCCTCGCCGCAGAGAGAATGAGCACTCAAGTCCC
AGACAGCAACGGTATTCGCGGGGTCGTCGTTACCACGGCCAGCATCGCCG
CCTTTGACGGTCAAATCGGCCAGGCTGCCTACGCCGCCTCCAAGGCCGCT
GTTGCCGGTCTAACCCTCCCCCTTGCGCGTGATCTGTCTAGGGATGGCGT
GAGGGTCGTCTCGATCGCGCCTGGATTATTCAAGACCCCAATGCTGGCAG
CCCTGCCAGAACAGGTCCAGAAAGAGCTAGGGAGAACTGTACCGTTGCCT
AACAGGCTGGGGGATCCGTCGGAATTTGCAATGCTGGTGCAGTCTATCGT
GGAGAATCCCATGATTAATGGGGAGGTGATCCGGTTGGATGGGGCGTTGC
GGATGCCGCCATCTTGAATGGTGCTCAGTCACGTCACGGCCCTCGTCACC
GGCGCGGCTTCGGGCCTGGGCCAAGCCACAGCCCTGCGCTTCTTACAACA
GGGAGCTCGCGTTGTGCTGGCAGATTTACCGGCCACCAAGCCTGCGGCAT
TGGCCTCTCTCCAAGAGCTTGACCAGGACATGCGGGCTCGCGGCGTTTTC
GCGGGAGTCGATGTCCTCGACAGCTCCCTTGTCTCGGCGGGGCTGGATAG
AGCTTCATCCCAATGGGGACAGACAGTGAATGTCGTGGTTAACTGCGCAG
GTATCGCCGTGGCCCAACGCGTACTTGGAAAGAAGGGGCCGCATTCCTTA
GAGGCTTTTCTCAAGGTTTTGTCGGTGAATGCCGGAGGTACTTTCAACGT
CACCCGCCTCGCCGCAGAGAGAATGAGCACTCAAGTCCCAGACAGCAACG
GTATTCGCGGGGTCGTCGTTACCACGGCCAGCATCGCCGCCTTTGACGGT
CAAATCGGCCAGGCTGCCTACGCCGCCTCCAAGGCCGCTGTTGCCGGTCT
AACCCTCCCCCTTGCGCGTGATCTGTCTAGGGATGGCGTGAGGGTCGTCT
CGATCGCGCCTGGATTATTCAAGACCCCAATGCTGGCAGCCCTGCCAGAA
CAGGTCCAGAAAGAGCTAGGGAGAACTGTACCGTTGCCTAACAGGCTGGG
GGATCCGTCGGAATTTGCAATGCTGGTGCAGTCTATCGTGGAGAATCCCA
TGATTAATGGGGAGGTGATCCGGTTGGATGGGGCGTTGCGGATGCCGCCA
TCTTGAATGGTGCTCAGTCACGTCACGGCCCTCGTCACCGGCGCGGCTTC
GGGCCTGGGCCAAGCCACAGCCCTGCGCTTCTTACAACAGGGAGCTCGCG
TTGTGCTGGCAGATTTACCGGCCACCAAGCCTGCGGCATTGGCCTCTCTC
CAAGAGCTTGACCAGGACATGCGGGCTCGCGGCGTTTTCGCGGGAGTCGA
TGTCCTCGACAGCTCCCTTGTCTCGGCGGGGCTGGATAGAGCTTCATCCC
AATGGGGACAGACAGTGAATGTCGTGGTTAACTGCGCAGGTATCGCCGTG
GCCCAACGCGTACTTGGAAAGAAGGGGCCGCATTCCTTAGAGGCTTTTCT
CAAGGTTTTGTCGGTGAATGCCGGAGGTACTTTCAACGTCACCCGCCTCG
CCGCAGAGAGAATGAGCACTCAAGTCCCAGACAGCAACGGTATTCGCGGG
GTCGTCGTTACCACGGCCAGCATCGCCGCCTTTGACGGTCAAATCGGCCA
GGCTGCCTACGCCGCCTCCAAGGCCGCTGTTGCCGGTCTAACCCTCCCCC
TTGCGCGTGATCTGTCTAGGGATGGCGTGAGGGTCGTCTCGATCGCGCCT
GGATTATTCAAGACCCCAATGCTGGCAGCCCTGCCAGAACAGGTCCAGAA
AGAGCTAGGGAGAACTGTACCGTTGCCTAACAGGCTGGGGGATCCGTCGG
AATTTGCAATGCTGGTGCAGTCTATCGTGGAGAATCCCATGATTAATGGG
GAGGTGATCCGGTTGGATGGGGCGTTGCGGATGCCGCCATCTTGA

Synonyms

Publications