jgi.p|Nanoce1779_2|591726, mRNA_5202 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591726
Unique NamemRNA_5202
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length836
Alignment locationscaffold_12:727362..728715 -

Link to JBrowse

Properties
Property NameValue
TranscriptId591812
TrackFilteredModels2
ProteinId591726
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:727362..728715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591726gene_5202Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591726mRNA_5202-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5202CDS_5202Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5202 ID=mRNA_5202|Name=jgi.p|Nanoce1779_2|591726|organism=Nannochloropsis oceanica|type=mRNA|length=836bp
GGGCAGCCGGCGCCTTACTTGCACCTTGCTTGGGCGTTCGAGCTGCTTTG
TTCCACCACCCGCCGCCTGACAAAAGCCGATGTCCTCGTCAACATGTTTC
GGTCGCTTATGGCCCTGGCCCCGGACGACGTCCTCCCTGCTGTGTATTTG
TCAAGCAACAAGCTGGCCTCGTCGTTTGAGGGCATCGATATCAATGTGGG
CGGCTCGACGGTGTCTGCGGCGGTGATTCACGCCACTGGGACGTCGTCAG
ACAAGATGAAGCAGTTGTATACGGAGTTGGGGGATCTCGGGGATGTGGCG
CAAGCCCTGCGAGTGAAGCAGCGCCTCCTCGTGGTCCCTGAGCCCCTGAC
GGTGCGAGGCGTCTATCAGACTATAATCGATATGGCCAGCATGAAAGGTA
CCTCTTTTTTCCTTCCTCCCTCCCTTTATAGCCACGGAACTAGCGTTCCT
CCTTTCCTTCCTCCGTCCTTCCCTCCCGCGCGTCTTCGCTCCCGCTTCCC
TTAATTTGACTCGCGGCATGTCTTCCAACAAACGACACCTACAATCATAC
GTACGCAATAATAAGGGCAAGGATGCGAGGGTCGGAAACGCATGATGATG
GTGCGTCTCATTCGCTCGTGTCGAGGCCCCGAAGCCAAGTTCCTAGTCCG
CACCCTCGTCCAGAATCTCCGCACGGGCGCAACACTCACCAGTGTACTGG
CAGCTCTTGCCATGGCCGCCGTCATGCACCACGCCGAGCGGGAGAAGGAG
GGAGGGACCGAGGGAGGGACCGAGGGAGGGACGGGGAGGGGGAGGGGGAA
GGCAGTGATGGAGGCACGGTTGAAGGCGGCGCAGGT
back to top

protein sequence of jgi.p|Nanoce1779_2|591726

>mRNA_5202-protein ID=mRNA_5202-protein|Name=jgi.p|Nanoce1779_2|591726|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MFRSLMALAPDDVLPAVYLSSNKLASSFEGIDINVGGSTVSAAVIHATGT
SSDKMKQLYTELGDLGDVAQALRVKQRLLVVPEPLTVRGVYQTIIDMASM
KGTSFFLPPSLYSHGTSVPPFLPPSFPPARLRSRFP*
back to top

mRNA from alignment at scaffold_12:727362..728715-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5202 ID=mRNA_5202|Name=jgi.p|Nanoce1779_2|591726|organism=Nannochloropsis oceanica|type=mRNA|length=1354bp|location=Sequence derived from alignment at scaffold_12:727362..728715- (Nannochloropsis oceanica)
GGGCAGCCGGCGCCTTACTTGCACCTTGCTTGGGCGTTCGAGCTGCTTTG
TTCCACCACCCGCCGCCTGACAAAAGCCGATGTCCTCGTCAACATGTTTC
GGTCGCTTATGGCCCTGGCCCCGGACGACGTCCTCCCTGCTGTGTATTTG
TCAAGCAACAAGCTGGCCTCGTCGTTTGAGGGCATCGATATCAATGTGGG
CGGCTCGACGGTGTCTGCGGCGGTGATTCACGCCACTGGGACGTCGTCAG
ACAAGATGAAGCAGTTGTATACGGAGTTGGGGTGAGCAGGGGGAGAAAGG
AGGGAAAGGGCTGATCAAACGCTTGCCATCAAATAATAAATTGTATTATT
TAGTTGCCCAATCATATCGGAATCAACCTCCTGAAATACTTTCCTCCCTC
TCCTCTCTTCCTCCCTTCCCAACATAGGGATCTCGGGGATGTGGCGCAAG
CCCTGCGAGTGAAGCAGCGCCTCCTCGTGGTCCCTGAGCCCCTGACGGTG
CGAGGCGTCTATCAGACTATAATCGATATGGCCAGCATGAAAGGTACCTC
TTTTTTCCTTCCTCCCTCCCTTTATAGCCACGGAACTAGCGTTCCTCCTT
TCCTTCCTCCGTCCTTCCCTCCCGCGCGTCTTCGCTCCCGCTTCCCTTAA
TTTGACTCGCGGCATGTCTTCCAACAAACGACACCTACAATCATACGTAC
GCAATAATAAGGGCAAGGATGCGAGGGTCGGAAACGCATGATGATGGTGC
GTCTCATTCGCTCGTGTCGAGGCCCCGAAGCCAAGTTCCTAGGTGAGTCT
TGCCCTACGTTCCCTCCTTCCCCCCCCCCCCCCTCCCTCTATCCTATTTT
TTCCTTCCTTCCTTCCTTCTTTCCTTACATTCTTAATCTAAGGCTAGGCG
GTATGTAGGGGAGGAGGTGGTAGTGGGACGATGGGACAGGGGGTAAATGG
TTCACTGTACATGCATGCATGGTGATATAAATTTCGCTGGTGGTGATATT
ACCATGGCCGCCGTCATGCACTGTTTAATCAATACGAAAGGTACCTCTTA
TCCTCCGTCCCTCTTTCCATTTCTCACTGCTTTCCTTCCCCCGTCCTTCC
CTCCCTCTTTCATCTCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CCCCCCGACCCAAGTCCGCACCCTCGTCCAGAATCTCCGCACGGGCGCAA
CACTCACCAGTGTACTGGCAGCTCTTGCCATGGCCGCCGTCATGCACCAC
GCCGAGCGGGAGAAGGAGGGAGGGACCGAGGGAGGGACCGAGGGAGGGAC
GGGGAGGGGGAGGGGGAAGGCAGTGATGGAGGCACGGTTGAAGGCGGCGC
AGGT
back to top

Coding sequence (CDS) from alignment at scaffold_12:727362..728715-

>mRNA_5202 ID=mRNA_5202|Name=jgi.p|Nanoce1779_2|591726|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_12:727362..728715- (Nannochloropsis oceanica)
GGATCTCGGGGATGTGGCGCAAGCCCTGCGAGTGAAGCAGCGCCTCCTCG
TGGTCCCTGAGCCCCTGACGGTGCGAGGCGTCTATCAGACTATAATCGAT
ATGGCCAGCATGAAAGGTACCTCTTTTTTCCTTCCTCCCTCCCTTTATAG
CCACGGAACTAGCGTTCCTCCTTTCCTTCCTCCGTCCTTCCCTCCCGCGC
GTCTTCGCTCCCGCTTCCCTTAAATGTTTCGGTCGCTTATGGCCCTGGCC
CCGGACGACGTCCTCCCTGCTGTGTATTTGTCAAGCAACAAGCTGGCCTC
GTCGTTTGAGGGCATCGATATCAATGTGGGCGGCTCGACGGTGTCTGCGG
CGGTGATTCACGCCACTGGGACGTCGTCAGACAAGATGAAGCAGTTGTAT
ACGGAGTTGGGGGATCTCGGGGATGTGGCGCAAGCCCTGCGAGTGAAGCA
GCGCCTCCTCGTGGTCCCTGAGCCCCTGACGGTGCGAGGCGTCTATCAGA
CTATAATCGATATGGCCAGCATGAAAGGTACCTCTTTTTTCCTTCCTCCC
TCCCTTTATAGCCACGGAACTAGCGTTCCTCCTTTCCTTCCTCCGTCCTT
CCCTCCCGCGCGTCTTCGCTCCCGCTTCCCTTAAATGTTTCGGTCGCTTA
TGGCCCTGGCCCCGGACGACGTCCTCCCTGCTGTGTATTTGTCAAGCAAC
AAGCTGGCCTCGTCGTTTGAGGGCATCGATATCAATGTGGGCGGCTCGAC
GGTGTCTGCGGCGGTGATTCACGCCACTGGGACGTCGTCAGACAAGATGA
AGCAGTTGTATACGGAGTTGGG
back to top
Synonyms
Publications