jgi.p|Nanoce1779_2|591721, mRNA_5200 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591721
Unique Name	mRNA_5200
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1874
Alignment location	scaffold_12:722600..724677 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591807
Track	FilteredModels2
ProteinId	591721

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:722600..724677 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591721	gene_5200	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591721	mRNA_5200-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5200	CDS_5200	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:722600..724677+
coding sequence from alignment at scaffold_12:722600..724677+

mRNA sequence

>mRNA_5200 ID=mRNA_5200|Name=jgi.p|Nanoce1779_2|591721|organism=Nannochloropsis oceanica|type=mRNA|length=1874bp
AGAGGCCGGTGCAAACACACAAACGCACGCCATGACGACGTCGGGCGAGA
CAACAGGCCAGAAGTTGCATCCCGAAGACCGGCACTTCATTATTGTGGGG
GCGGGCCCCGTGGGTCTCCTGGCCGCAATCCTTCTGGTCCAAGAGATCGA
CGCCCTTCAGGTGACAATATACGAATCTCGTGATGGCCTCATTACGGATC
TGCAAGAGAGCTATCCCGTTGGCGTCAACCCTCGAGGGGCCAGGGCGTTG
GATCGGGCTAGGCCCGACATGGCCATTGCCCTGCGCAAACGGGGCGTCAT
GGTTGATGCCTGGAAGATTTATGCTGGCAGACGGATGATCGCTGAGGTAC
CATCGGGCTTGGTGGTGGGTACTACGCGGAGCATGATTAACGAGATGTTG
TATGAGGAGGTCCGGAAGCATTTTCGAGGACGGATTGAAATCAAGTGGGG
GCATCGCCTCAAGTCCTTGGACTTGCTCGAACGCCGCTTGGTCTTTGACG
TAAAACAGCCAGCGACGGATCCTGACCTGGCACGGACATATGAGGAAGTG
ACGGTGGAGGGAGGGGGGGCAAGAATGTTGGCATGCGATGGGGTCTGGAG
CGAGGTGCGTGCGTTTGCAGAGAACCACGTGGAGGGCTTCAAGAGTCAAA
TCACTCCCTGGGGGGTTCAATTTCGACTGCTCTTTTCTAAACCTGGTGCG
GGAGCCTTGGTGCCGTACCTGAAACCTGAGAATCACTATGTAATGAGCGG
GATCTACGTGTCAATCATTGAGGGCAACGTGTGGGTCATGGGCTTAGGGA
TAGATGATGGTCTTCCTGCCCAAACCCGAGATCTCCTTCTCGCCACGGAA
TCGACGCCTACACGTGTGGCGGCCTTGCGGGCATATGTCACGAAGAAGGC
ACCCTTGGCGGCCCCACTCTTGACGGAGGAGGATTTGAGTATGTATTTTA
AGAGGAGGAGCTTTCGCGGAGCGATGGTGAAGGTCAACCGACTTAATCTT
GGGGAGTGGGGCGTGTTGCTGGGTGGTACGTACAGAGGTGTGGGAGAACA
AGGAGGGGAAATGATGAAGAGGGGGAGGGGCAATGGATTTGATTCCATGT
TTTTTGCGTCGAGCACATGAGTAAATGTGACGTGTTTAAAAAAGGTCAGA
TATTATTTTTGTTATTTTGACTTATCCCTCTTTTGGTCGGGGCTCCTCTG
TCCCCTGATGCGGCTCATTCCATCAATACTCTTTCAGTGAAGGATTTAGG
GCCCAGGCGTCACAGACGATTCTGCACAGTGACCTTAAGGACCACTCCAT
CCCCCTTGCTGACGTACTCTCCTCCGCCCTTCCCACACAACCATACGCAG
ACGCCGCACACTGCGTCATTCCTCCCATCGGCGAAGGATTTAATTCCGGG
GCGGAGGATGTGGAAGTCCTCATGGATGCCATGCACCACGACCTCGACCA
CCCCTTCAGCAAATACAACGAGTGGCGTCTCCCCGATTTGCACGCCCTGC
ATGAACTGGCTTTCGATGTCAATCAATCGAATTTTGGAAATTTAGGCCCG
GAAAAGATAAGTCGGTTGATAACTTCGATGATGGTAGGGCTTGCCAAGAG
CTGCGGGGTGTTCAGGACAACGTGGGAAGACATGAGTTTTGGCGCTGATG
CCTTCCCGCCCAAATCGTACCTGGAAATCGGGAGTGTGTGGCGGTGGCAG
CGCTTGTTTCTTCTACCGCTGGCAAGGATAATTGTGTGGCCTATGTATTT
ATTGGTTTGGGTGGTGATGCGGCCGGTACAATTGATGTGGACGGTGATGA
CGGGCCCTAATCGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGA
GAGAGAGGAAGAGGAGGAGACGGG

protein sequence of jgi.p|Nanoce1779_2|591721

>mRNA_5200-protein ID=mRNA_5200-protein|Name=jgi.p|Nanoce1779_2|591721|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MTTSGETTGQKLHPEDRHFIIVGAGPVGLLAAILLVQEIDALQVTIYESR
DGLITDLQESYPVGVNPRGARALDRARPDMAIALRKRGVMVDAWKIYAGR
RMIAEVPSGLVVGTTRSMINEMLYEEVRKHFRGRIEIKWGHRLKSLDLLE
RRLVFDVKQPATDPDLARTYEEVTVEGGGARMLACDGVWSEVRAFAENHV
EGFKSQITPWGVQFRLLFSKPGAGALVPYLKPENHYVMSGIYVSIIEGNV
WVMGLGIDDGLPAQTRDLLLATESTPTRVAALRAYVTKKAPLAAPLLTEE
DLSMYFKRRSFRGAMVKVNRLNLGEWGVLLGGTYRGVGEQGGEMMKRGRG
NGFDSMFFASST*

mRNA from alignment at scaffold_12:722600..724677+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5200 ID=mRNA_5200|Name=jgi.p|Nanoce1779_2|591721|organism=Nannochloropsis oceanica|type=mRNA|length=2078bp|location=Sequence derived from alignment at scaffold_12:722600..724677+ (Nannochloropsis oceanica)
AGAGGCCGGTGCAAACACACAAACGCACGCCATGACGACGTCGGGCGAGA
CAACAGGCCAGAAGTTGCATCCCGAAGACCGGCACTTCATTATTGTGGGG
GCGGGCCCCGTGGGTCTCCTGGCCGCAATCCTTCTGGTCCAAGAGATCGA
CGCCCTTCAGGTAAAACACACACGCCTCAAGGATGGCATCACCGTACACT
CTTGTCCAGAAGATAGAGGTGGTATGTAGTTGTTGCTGTTAAGCCTTACT
CGCCGAAGAGAGTTTGCATCAACATGGCCCGCCCTCCCGCCCTCCTTGCA
CCCTCCTTCAAACCCTTCCTTACGCACATGTATTCCCGCATCACCACATC
ACCCACCAAAATAGGTGACAATATACGAATCTCGTGATGGCCTCATTACG
GATCTGCAAGAGAGCTATCCCGTTGGCGTCAACCCTCGAGGGGCCAGGGC
GTTGGATCGGGCTAGGCCCGACATGGCCATTGCCCTGCGCAAACGGGGCG
TCATGGTTGATGCCTGGAAGATTTATGCTGGCAGACGGATGATCGCTGAG
GTACCATCGGGCTTGGTGGTGGGTACTACGCGGAGCATGATTAACGAGAT
GTTGTATGAGGAGGTCCGGAAGCATTTTCGAGGACGGATTGAAATCAAGT
GGGGGCATCGCCTCAAGTCCTTGGACTTGCTCGAACGCCGCTTGGTCTTT
GACGTAAAACAGCCAGCGACGGATCCTGACCTGGCACGGACATATGAGGA
AGTGACGGTGGAGGGAGGGGGGGCAAGAATGTTGGCATGCGATGGGGTCT
GGAGCGAGGTGCGTGCGTTTGCAGAGAACCACGTGGAGGGCTTCAAGAGT
CAAATCACTCCCTGGGGGGTTCAATTTCGACTGCTCTTTTCTAAACCTGG
TGCGGGAGCCTTGGTGCCGTACCTGAAACCTGAGAATCACTATGTAATGA
GCGGGATCTACGTGTCAATCATTGAGGGCAACGTGTGGGTCATGGGCTTA
GGGATAGATGATGGTCTTCCTGCCCAAACCCGAGATCTCCTTCTCGCCAC
GGAATCGACGCCTACACGTGTGGCGGCCTTGCGGGCATATGTCACGAAGA
AGGCACCCTTGGCGGCCCCACTCTTGACGGAGGAGGATTTGAGTATGTAT
TTTAAGAGGAGGAGCTTTCGCGGAGCGATGGTGAAGGTCAACCGACTTAA
TCTTGGGGAGTGGGGCGTGTTGCTGGGTGGTACGTACAGAGGTGTGGGAG
AACAAGGAGGGGAAATGATGAAGAGGGGGAGGGGCAATGGATTTGATTCC
ATGTTTTTTGCGTCGAGCACATGAGTAAATGTGACGTGTTTAAAAAAGGT
CAGATATTATTTTTGTTATTTTGACTTATCCCTCTTTTGGTCGGGGCTCC
TCTGTCCCCTGATGCGGCTCATTCCATCAATACTCTTTCAGTGAAGGATT
TAGGGCCCAGGCGTCACAGACGATTCTGCACAGTGACCTTAAGGACCACT
CCATCCCCCTTGCTGACGTACTCTCCTCCGCCCTTCCCACACAACCATAC
GCAGACGCCGCACACTGCGTCATTCCTCCCATCGGCGAAGGATTTAATTC
CGGGGCGGAGGATGTGGAAGTCCTCATGGATGCCATGCACCACGACCTCG
ACCACCCCTTCAGCAAATACAACGAGTGGCGTCTCCCCGATTTGCACGCC
CTGCATGAACTGGCTTTCGATGTCAATCAATCGAATTTTGGAAATTTAGG
CCCGGAAAAGATAAGTCGGTTGATAACTTCGATGATGGTAGGGCTTGCCA
AGAGCTGCGGGGTGTTCAGGACAACGTGGGAAGACATGAGTTTTGGCGCT
GATGCCTTCCCGCCCAAATCGTACCTGGAAATCGGGAGTGTGTGGCGGTG
GCAGCGCTTGTTTCTTCTACCGCTGGCAAGGATAATTGTGTGGCCTATGT
ATTTATTGGTTTGGGTGGTGATGCGGCCGGTACAATTGATGTGGACGGTG
ATGACGGGCCCTAATCGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGG
AGGAGAGAGAGGAAGAGGAGGAGACGGG

Coding sequence (CDS) from alignment at scaffold_12:722600..724677+

>mRNA_5200 ID=mRNA_5200|Name=jgi.p|Nanoce1779_2|591721|organism=Nannochloropsis oceanica|type=CDS|length=2178bp|location=Sequence derived from alignment at scaffold_12:722600..724677+ (Nannochloropsis oceanica)
ATGACGACGTCGGGCGAGACAACAGGCCAGAAGTTGCATCCCGAAGACCG
GCACTTCATTATTGTGGGGGCGGGCCCCGTGGGTCTCCTGGCCGCAATCC
TTCTGGTCCAAGAGATCGACGCCCTTCAGGTGACAATATACGAATCTCGT
GATGGCCTCATTACGGATCTGCAAGAGAGCTATCCCGTTGGCGTCAACCC
TCGAGGGGCCAGGGCGTTGGATCGGGCTAGGCCCGACATGGCCATTGCCC
TGCGCAAACGGGGCGTCATGGTTGATGCCTGGAAGATTTATGCTGGCAGA
CGGATGATCGCTGAGGTACCATCGGGCTTGGTGGTGGGTACTACGCGGAG
CATGATTAACGAGATGTTGTATGAGGAGGTCCGGAAGCATTTTCGAGGAC
GGATTGAAATCAAGTGGGGGCATCGCCTCAAGTCCTTGGACTTGCTCGAA
CGCCGCTTGGTCTTTGACGTAAAACAGCCAGCGACGGATCCTGACCTGGC
ACGGACATATGAGGAAGTGACGGTGGAGGGAGGGGGGGCAAGAATGTTGG
CATGCGATGGGGTCTGGAGCGAGGTGCGTGCGTTTGCAGAGAACCACGTG
GAGGGCTTCAAGAGTCAAATCACTCCCTGGGGGGTTCAATTTCGACTGCT
CTTTTCTAAACCTGGTGCGGGAGCCTTGGTGCCGTACCTGAAACCTGAGA
ATCACTATGTAATGAGCGGGATCTACGTGTCAATCATTGAGGGCAACGTG
TGGGTCATGGGCTTAGGGATAGATGATGGTCTTCCTGCCCAAACCCGAGA
TCTCCTTCTCGCCACGGAATCGACGCCTACACGTGTGGCGGCCTTGCGGG
CATATGTCACGAAGAAGGCACCCTTGGCGGCCCCACTCTTGACGGAGGAG
GATTTGAGTATGTATTTTAAGAGGAGGAGCTTTCGCGGAGCGATGGTGAA
GGTCAACCGACTTAATCTTGGGGAGTGGGGCGTGTTGCTGGGTGGTACGT
ACAGAGGTGTGGGAGAACAAGGAGGGGAAATGATGAAGAGGGGGAGGGGC
AATGGATTTGATTCCATGTTTTTTGCGTCGAGCACATGAATGACGACGTC
GGGCGAGACAACAGGCCAGAAGTTGCATCCCGAAGACCGGCACTTCATTA
TTGTGGGGGCGGGCCCCGTGGGTCTCCTGGCCGCAATCCTTCTGGTCCAA
GAGATCGACGCCCTTCAGGTGACAATATACGAATCTCGTGATGGCCTCAT
TACGGATCTGCAAGAGAGCTATCCCGTTGGCGTCAACCCTCGAGGGGCCA
GGGCGTTGGATCGGGCTAGGCCCGACATGGCCATTGCCCTGCGCAAACGG
GGCGTCATGGTTGATGCCTGGAAGATTTATGCTGGCAGACGGATGATCGC
TGAGGTACCATCGGGCTTGGTGGTGGGTACTACGCGGAGCATGATTAACG
AGATGTTGTATGAGGAGGTCCGGAAGCATTTTCGAGGACGGATTGAAATC
AAGTGGGGGCATCGCCTCAAGTCCTTGGACTTGCTCGAACGCCGCTTGGT
CTTTGACGTAAAACAGCCAGCGACGGATCCTGACCTGGCACGGACATATG
AGGAAGTGACGGTGGAGGGAGGGGGGGCAAGAATGTTGGCATGCGATGGG
GTCTGGAGCGAGGTGCGTGCGTTTGCAGAGAACCACGTGGAGGGCTTCAA
GAGTCAAATCACTCCCTGGGGGGTTCAATTTCGACTGCTCTTTTCTAAAC
CTGGTGCGGGAGCCTTGGTGCCGTACCTGAAACCTGAGAATCACTATGTA
ATGAGCGGGATCTACGTGTCAATCATTGAGGGCAACGTGTGGGTCATGGG
CTTAGGGATAGATGATGGTCTTCCTGCCCAAACCCGAGATCTCCTTCTCG
CCACGGAATCGACGCCTACACGTGTGGCGGCCTTGCGGGCATATGTCACG
AAGAAGGCACCCTTGGCGGCCCCACTCTTGACGGAGGAGGATTTGAGTAT
GTATTTTAAGAGGAGGAGCTTTCGCGGAGCGATGGTGAAGGTCAACCGAC
TTAATCTTGGGGAGTGGGGCGTGTTGCTGGGTGGTACGTACAGAGGTGTG
GGAGAACAAGGAGGGGAAATGATGAAGAGGGGGAGGGGCAATGGATTTGA
TTCCATGTTTTTTGCGTCGAGCACATGA

Synonyms

Publications