|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 591803 |
| Track | FilteredModels2 |
| ProteinId | 591717 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:719727..722527 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5198 ID=mRNA_5198|Name=jgi.p|Nanoce1779_2|591717|organism=Nannochloropsis oceanica|type=mRNA|length=2500bp
CAGGAAGCTTACTGCTGCTTTGTGAGAAGGGGCTTGCAGGCTGGTGGTGT
CCAAACCGGCTCTTGAGCTCACAAATCGTGGCGACATCCTCATGCACACA
AGACACAGGATACACCCGCAAATAAATATCATGGCCAGCCTCACGTTGCT
CCTGTCATCCAGGCTTTTGACCTCTCTTTTCCTATGCCTTTTGATGGCTG
CCTTTTGGAGCACGACGCTCGCCTTTGTCCCTCCTTGCTGTCACAGCAGC
AGCGGCCGCCGCCAAGTGAAGGCCACGACGACGCGCATGATGGCGGAGCG
ATTCTACTCCAAATGGAGCCGGGCGGATTTCGTGCTCAAGAGCGCACTAG
CTGCGGCGGCAGTTATTCCAGTGATCAAGGGCGGGACCATGGCGCGCGAT
GCCCAGGCCACCGAGCGGGTAGTGTTGCCCGTCAAGTACGTGGAAGGAAT
AATAGGAGGGTGGTAGGAAAAGCTTCGACGAGATAGATTCCTTCATTATA
CTTGTTCTTCTAATACAGCATTGAAAATTGTGTCAGTTTGTCATAATCCA
TTTCTTTTTTCTCCTATTGACAGAAATGGCAAACTTGCCACCGACGAAGA
CGAGGAAAAAGACAGCCCCCTCGCCTTCTCCTCTGCCAAGGGCGTGCCTC
TGCGTTTCCCCCTCCACAAAAGCCAAGAGCAAGCCCTGTCTGAGCTTCAA
GAAGTGGTCGTCCGCGTCGGAGGCCGCTTGTCTAAGGCCCGTGGGGGTTC
TCGAAGCGATGTGCTCCGTGCCGCGTTCCAGTCGAAGGACGACGATTTGT
ATTTCCGATTTGGCGGGGACGGAGGTAGCAGTGGGTATAGCAGTGTGCTG
CAGGCAAGTGTGGGTAGAGATGTGGATAATATGAGATTGATGAATGCATT
GGCGGATGGATTGGCATCTAAGGGGTGGTTGGCGGCGGGCTTTCCCTTAT
CATGTGATCCTGCGATGGGCCAGTATTATTCCCAGGAGTTTAAGTGCACG
GTGTAGTGATGAGCCGTGAGGGCAAGAAATTAATTGACGACATGAAGGGG
AAATGAAATTGTATGCTCAAGTCCTTCTCGCTTCGTTTTGTTATTCCTTT
TAAAACTAACCATGGACTTGCCCGAGCGCAGACGATACGTGCACAACCTC
CTCCCCCTTCCAATACTTGCCCGGATCACGCCCGCCCTTTAAATCACCTG
TACACCAACATCACTCCACACACATTGGGATAACATCTGTCCTGCATATT
AGGGCAAGCAAGGAAAAAGAGCTGCAGCATGGAGGGCCAAGGCGGAGTCT
ACCTAGCTTTAAATTCAACTAAAGGTTGTCTGCCTTTCACGCACATCATA
AGTTGTACCACAATTACACACAGACCACGCAATGCCGCCGCGACTAAAAT
CAAGACCATCACCAGCGCTGCATCCGTCCTCCTCCGTAGTAATTTCCCTC
ATCTTCCTGTACTTTGTCCTGTCTGTGGATGCCTTTCAATTTCTGCAGCC
TCTACCATACAGTAGAAGGTTCCTGCATCGCAACCTCCATCTTCATCGCC
ATCTCAAAGCCGCTCGCACGGCCTTGCCACCTAGTGTTGTCGTGCCTGAA
CATTTAGCCTTGGTATTAGACGGTAATGGACGTTGGGCGCAGCAGCGGGG
GTTGCCGCGTGGCGCGGGGCACATGGAGGGGACCCAAAGGGCGTTCGACG
TCCTGAAGACGTGCCAGGCCTTGGGCATTCGCACAGTGACCCTCTATTGC
CTCAGCACGGAAAATTGGAGCCGGCCCCAAGCCGAGATCATCATAATCCT
GGGCTGCATTGAGAATTCTCTCCGAGCTAACCTGGAGTATGCTCACAAGA
ACCGCATCCGCCTTGTCGTGATTGGGCAAATGCACCGACTCCCCCTAAGC
CTTCAGGCGCTGGTAACACGGGCCGAGGCAGAGACTGCGGGCTACACACA
GGAGGATGGAATGACGGTGTGCTTGGCGTTAAGCTACGGTGGACGCGATG
ACATTGTCCAGGCATGTCGCGCCTTGGCTAAACAAGTGGCTACGGGCGAG
GTCCACCCGGAAGAGATTGATGAGACCTTGTTTGAGTCACGACTATCAAC
TCATCAAAAGGGAATCCTTCGTCCTCCAGACCTAGTTGTCCGCACATCTG
GAGAGCAGCGATGGTCCAATTTTATGCTTTTTGAATGCGCATACTCCGAA
TTCTTTGTTTCAGAGGCCTTGTGGCCCGATTTTAGGCAAGAAAATTTGCT
TGCGGCCTTGGAAAGCTATGGACGGAGGAGAAGGCGCTTTGGCAGAGTGA
CGGAATGCAAGCCGGCAGCTGCTGCAACAACAGAGCAACAAGGTGGGAAA
GCAGATCACGGAAGAGTGTAATGTAACCCGGTATTAAAAATCCGCGAGCA
TGTACGATTAACACTGGCTTGTTATAGGAAGCACAAAAAAAGCCGGTAAA
GTAAAGAACAAGGGGCTCTGTCAACTGTACTGTTGTTAAAAAAAAAGTCC back to topprotein sequence of jgi.p|Nanoce1779_2|591717 >mRNA_5198-protein ID=mRNA_5198-protein|Name=jgi.p|Nanoce1779_2|591717|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MPPRLKSRPSPALHPSSSVVISLIFLYFVLSVDAFQFLQPLPYSRRFLHR
NLHLHRHLKAARTALPPSVVVPEHLALVLDGNGRWAQQRGLPRGAGHMEG
TQRAFDVLKTCQALGIRTVTLYCLSTENWSRPQAEIIIILGCIENSLRAN
LEYAHKNRIRLVVIGQMHRLPLSLQALVTRAEAETAGYTQEDGMTVCLAL
SYGGRDDIVQACRALAKQVATGEVHPEEIDETLFESRLSTHQKGILRPPD
LVVRTSGEQRWSNFMLFECAYSEFFVSEALWPDFRQENLLAALESYGRRR
RRFGRVTECKPAAAATTEQQGGKADHGRV* back to topmRNA from alignment at scaffold_12:719727..722527- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5198 ID=mRNA_5198|Name=jgi.p|Nanoce1779_2|591717|organism=Nannochloropsis oceanica|type=mRNA|length=2801bp|location=Sequence derived from alignment at scaffold_12:719727..722527- (Nannochloropsis oceanica)
CAGGAAGCTTACTGCTGCTTTGTGAGAAGGGGCTTGCAGGCTGGTGGTGT
CCAAACCGGCTCTTGAGCTCACAAATCGTGGCGACATCCTCATGCACACA
AGACACAGGATACACCCGCAAATAAATATCATGGCCAGCCTCACGTTGCT
CCTGTCATCCAGGCTTTTGACCTCTCTTTTCCTATGCCTTTTGATGGCTG
CCTTTTGGAGCACGACGCTCGCCTTTGTCCCTCCTTGCTGTCACAGCAGC
AGCGGCCGCCGCCAAGTGAAGGCCACGACGACGCGCATGATGGCGGAGCG
ATTCTACTCCAAATGGAGCCGGGCGGATTTCGTGCTCAAGAGCGCACTAG
CTGCGGTACGTTGAAGTGTGGAAAGCAAGAAGGATGAAGGAAGCGAAACA
GGAAGGGGGAGGAAAAGGGAAGGGGGAGGAAAGTATGGGAAAGTTAAATT
ACGCAGTACGTAGGCATCAATCATCTCACCCTTCCTCCCTCCTCTGCATA
CCCTCTCTACAGGCGGCAGTTATTCCAGTGATCAAGGGCGGGACCATGGC
GCGCGATGCCCAGGCCACCGAGCGGGTAGTGTTGCCCGTCAAGTACGTGG
AAGGAATAATAGGAGGGTGGTAGGAAAAGCTTCGACGAGATAGATTCCTT
CATTATACTTGTTCTTCTAATACAGCATTGAAAATTGTGTCAGTTTGTCA
TAATCCATTTCTTTTTTCTCCTATTGACAGAAATGGCAAACTTGCCACCG
ACGAAGACGAGGAAAAAGACAGCCCCCTCGCCTTCTCCTCTGCCAAGGGC
GTGCCTCTGCGTTTCCCCCTCCACAAAAGCCAAGAGCAAGCCCTGTCTGA
GCTTCAAGAAGTGGTCGTCCGCGTCGGAGGCCGCTTGTCTAAGGCCCGTG
GGGGTTCTCGAAGCGATGTGCTCCGTGCCGCGTTCCAGTCGAAGGACGAC
GATTTGTATTTCCGATTTGGCGGGGACGGAGGTAGCAGTGGGTATAGCAG
TGTGCTGCAGGCAAGTGTGGGTAGAGATGTGGATAATATGAGATTGATGA
ATGCATTGGCGGATGGATTGGCATCTAAGGGGTGGTTGGCGGCGGGCTTT
CCCTTATCATGTGATCCTGCGATGGGCCAGTATTATTCCCAGGAGTTTAA
GTGCACGGTGTAGTGATGAGCCGTGAGGGCAAGAAATTAATTGACGACAT
GAAGGGGAAATGAAATTGTATGCTCAAGTCCTTCTCGCTTCGTTTTGTTA
TTCCTTTTAAAACTAACCATGGACTTGCCCGAGCGCAGACGATACGTGCA
CAACCTCCTCCCCCTTCCAATACTTGCCCGGATCACGCCCGCCCTTTAAA
TCACCTGTACACCAACATCACTCCACACACATTGGGATAACATCTGTCCT
GCATATTAGGGCAAGCAAGGAAAAAGAGCTGCAGCATGGAGGGCCAAGGC
GGAGTCTACCTAGCTTTAAATTCAACTAAAGGTTGTCTGCCTTTCACGCA
CATCATAAGTTGTACCACAATTACACACAGACCACGCAATGCCGCCGCGA
CTAAAATCAAGACCATCACCAGCGCTGCATCCGTCCTCCTCCGTAGTAAT
TTCCCTCATCTTCCTGTACTTTGTCCTGTCTGTGGATGCCTTTCAATTTC
TGCAGCCTCTACCATACAGTAGAAGGTTCCTGCATCGCAACCTCCATCTT
CATCGCCATCTCAAAGCCGCTCGCACGGCCTTGCCACCTAGTGTTGTCGT
GCCTGAACATTTAGCCTTGGTATTAGACGGTAATGGACGTTGGGCGCAGC
AGCGGGGGTTGCCGCGTGGCGCGGGGCACATGGAGGGGACCCAAAGGGCG
TTCGACGTCCTGAAGACGTGCCAGGTGAGGAAGGAATCTGGAGAGAGGGT
TGGGAAAGTTTCGTGTAAGAAACGACGAGAGGATGAGGGTGCATGTTACA
CGAATTTGCGTCACAATATAGAAATCTAATCCTCAACGTTCCAACCACTC
CAATGGATATTATCGCAGGCCTTGGGCATTCGCACAGTGACCCTCTATTG
CCTCAGCACGGAAAATTGGAGCCGGCCCCAAGCCGAGATCATCATAATCC
TGGGCTGCATTGAGAATTCTCTCCGAGCTAACCTGGAGTATGCTCACAAG
AACCGCATCCGCCTTGTCGTGATTGGGCAAATGCACCGACTCCCCCTAAG
CCTTCAGGCGCTGGTAACACGGGCCGAGGCAGAGACTGCGGGCTACACAC
AGGAGGATGGAATGACGGTGTGCTTGGCGTTAAGCTACGGTGGACGCGAT
GACATTGTCCAGGCATGTCGCGCCTTGGCTAAACAAGTGGCTACGGGCGA
GGTCCACCCGGAAGAGATTGATGAGACCTTGTTTGAGTCACGACTATCAA
CTCATCAAAAGGGAATCCTTCGTCCTCCAGACCTAGTTGTCCGCACATCT
GGAGAGCAGCGATGGTCCAATTTTATGCTTTTTGAATGCGCATACTCCGA
ATTCTTTGTTTCAGAGGCCTTGTGGCCCGATTTTAGGCAAGAAAATTTGC
TTGCGGCCTTGGAAAGCTATGGACGGAGGAGAAGGCGCTTTGGCAGAGTG
ACGGAATGCAAGCCGGCAGCTGCTGCAACAACAGAGCAACAAGGTGGGAA
AGCAGATCACGGAAGAGTGTAATGTAACCCGGTATTAAAAATCCGCGAGC
ATGTACGATTAACACTGGCTTGTTATAGGAAGCACAAAAAAAGCCGGTAA
AGTAAAGAACAAGGGGCTCTGTCAACTGTACTGTTGTTAAAAAAAAAGTC
C back to topCoding sequence (CDS) from alignment at scaffold_12:719727..722527- >mRNA_5198 ID=mRNA_5198|Name=jgi.p|Nanoce1779_2|591717|organism=Nannochloropsis oceanica|type=CDS|length=1980bp|location=Sequence derived from alignment at scaffold_12:719727..722527- (Nannochloropsis oceanica)
GCCTTGGGCATTCGCACAGTGACCCTCTATTGCCTCAGCACGGAAAATTG
GAGCCGGCCCCAAGCCGAGATCATCATAATCCTGGGCTGCATTGAGAATT
CTCTCCGAGCTAACCTGGAGTATGCTCACAAGAACCGCATCCGCCTTGTC
GTGATTGGGCAAATGCACCGACTCCCCCTAAGCCTTCAGGCGCTGGTAAC
ACGGGCCGAGGCAGAGACTGCGGGCTACACACAGGAGGATGGAATGACGG
TGTGCTTGGCGTTAAGCTACGGTGGACGCGATGACATTGTCCAGGCATGT
CGCGCCTTGGCTAAACAAGTGGCTACGGGCGAGGTCCACCCGGAAGAGAT
TGATGAGACCTTGTTTGAGTCACGACTATCAACTCATCAAAAGGGAATCC
TTCGTCCTCCAGACCTAGTTGTCCGCACATCTGGAGAGCAGCGATGGTCC
AATTTTATGCTTTTTGAATGCGCATACTCCGAATTCTTTGTTTCAGAGGC
CTTGTGGCCCGATTTTAGGCAAGAAAATTTGCTTGCGGCCTTGGAAAGCT
ATGGACGGAGGAGAAGGCGCTTTGGCAGAGTGACGGAATGCAAGCCGGCA
GCTGCTGCAACAACAGAGCAACAAGGTGGGAAAGCAGATCACGGAAGAGT
GTAAATGCCGCCGCGACTAAAATCAAGACCATCACCAGCGCTGCATCCGT
CCTCCTCCGTAGTAATTTCCCTCATCTTCCTGTACTTTGTCCTGTCTGTG
GATGCCTTTCAATTTCTGCAGCCTCTACCATACAGTAGAAGGTTCCTGCA
TCGCAACCTCCATCTTCATCGCCATCTCAAAGCCGCTCGCACGGCCTTGC
CACCTAGTGTTGTCGTGCCTGAACATTTAGCCTTGGTATTAGACGGTAAT
GGACGTTGGGCGCAGCAGCGGGGGTTGCCGCGTGGCGCGGGGCACATGGA
GGGGACCCAAAGGGCGTTCGACGTCCTGAAGACGTGCCAGGCCTTGGGCA
TTCGCACAGTGACCCTCTATTGCCTCAGCACGGAAAATTGGAGCCGGCCC
CAAGCCGAGATCATCATAATCCTGGGCTGCATTGAGAATTCTCTCCGAGC
TAACCTGGAGTATGCTCACAAGAACCGCATCCGCCTTGTCGTGATTGGGC
AAATGCACCGACTCCCCCTAAGCCTTCAGGCGCTGGTAACACGGGCCGAG
GCAGAGACTGCGGGCTACACACAGGAGGATGGAATGACGGTGTGCTTGGC
GTTAAGCTACGGTGGACGCGATGACATTGTCCAGGCATGTCGCGCCTTGG
CTAAACAAGTGGCTACGGGCGAGGTCCACCCGGAAGAGATTGATGAGACC
TTGTTTGAGTCACGACTATCAACTCATCAAAAGGGAATCCTTCGTCCTCC
AGACCTAGTTGTCCGCACATCTGGAGAGCAGCGATGGTCCAATTTTATGC
TTTTTGAATGCGCATACTCCGAATTCTTTGTTTCAGAGGCCTTGTGGCCC
GATTTTAGGCAAGAAAATTTGCTTGCGGCCTTGGAAAGCTATGGACGGAG
GAGAAGGCGCTTTGGCAGAGTGACGGAATGCAAGCCGGCAGCTGCTGCAA
CAACAGAGCAACAAGGTGGGAAAGCAGATCACGGAAGAGTGTAAATGCCG
CCGCGACTAAAATCAAGACCATCACCAGCGCTGCATCCGTCCTCCTCCGT
AGTAATTTCCCTCATCTTCCTGTACTTTGTCCTGTCTGTGGATGCCTTTC
AATTTCTGCAGCCTCTACCATACAGTAGAAGGTTCCTGCATCGCAACCTC
CATCTTCATCGCCATCTCAAAGCCGCTCGCACGGCCTTGCCACCTAGTGT
TGTCGTGCCTGAACATTTAGCCTTGGTATTAGACGGTAATGGACGTTGGG
CGCAGCAGCGGGGGTTGCCGCGTGGCGCGGGGCACATGGAGGGGACCCAA
AGGGCGTTCGACGTCCTGAAGACGTGCCAG back to top
|