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Properties
| Property Name | Value |
|---|
| TranscriptId | 591793 |
| Track | FilteredModels2 |
| ProteinId | 591707 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:711751..713825 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5196 ID=mRNA_5196|Name=jgi.p|Nanoce1779_2|591707|organism=Nannochloropsis oceanica|type=mRNA|length=1613bp
ACAGGGTGCACGTCTTATCACGACATTCCAATGGACCCCATTCAGAACAA
GGTAGCCGAGCTCTCCATCGTTACGCGCGGGACACCGATAGCCGACCGCG
GCGTCATCCATCCCGGGATTGTCAATATTCGAGTGTTGGCAGCGAAAGGT
ATCAAATCCCTGGAGATCCTGGGCAAACCCGATACCTACGTGGTGGTGCG
GTACGGCGGCGAGGAGCATAGGACCAAGGAGGTGGACGACTGCGAAGACC
CGATCTACGAGGATGACTGGGTGTCGACCGGGGGTATGGCTGTAAATGAG
TTTGTAGAAGTGTCAATTATGGAGAAGTACACAGTGCGGGACAAGGAGCT
GGGCAGCCTCAAATTCCCCGCGGACTCATTCGCGCATAATATACTAGAGG
CCTCCTGGTTCGAGCTGGAACGCGATGGCGAGGTGTGTGGGGAAGTGTGC
CTTGCCGCCCGCTTCACCCCTGTTGTCTGCAGTGGCATGGGAAGGTCAGG
GAGCAACAGCAGCAGCAGCAACCGCTTTGGGGTCGGATCTGTCGAACAAG
CTGTGCAATATTTTTCGGGGCCGCGACCTTGGTACATGCGTGGCGGCTTT
TACTATGACCTAAGCAAGCGGGTGTATCGACGTGTGAAGCACATCCCGCT
CGTGGGGTTGGGACCGTCGATGGGGGAGTGTGTCGTGGAAGGGGTGCTCA
CTCACATTGTTTTGCGGAAGCAACCCGGGGAGATGGTGGCGACGGAGAGC
GGCATTGCACGGCTGGACCACGTCGTGACTGGGCTGATTACGACGATTGA
TGTGGGCATCGATCAGACCAAAGACCAGGTCTTGAAGAAGGCGGTGGCAT
TGAAGAAACAGATGACTGGGGAGATGGTCGTCGTCGAGCCCCCGGCGCAA
CAGCAGCAGAAGCAGCAGATGAAGAAGAGTAGTGGGATCATTTGGGGGCT
AGTGGAAGGGACTGTGGCCCATGTGGCCAGGCCGGTGACAAGCTACGTGC
CGATTGTGGGAGGGTTGGGAGTACAGATTCTTGATTACATCGTCCCTCCC
CCGCCACCCACCGAGATGAGCTTGGAGGCGAGGATGTCTGCTGCTGCCAC
TACTGCCGCTGATTCTGCTTCGACGGAAGGAGGGGCAAGCCCTATTCCTA
CAGCTGATGTATCGGCGTTTGACAAGCCCATAAGGAAGAGCAAGATGTCC
GCCAGCGGATTCTGAGAAAATTTGCCCTTCATCCCTCCCTCCCTCCATCC
CTCTCTCCCTCCTTATTCTACCACACCTATAGAGAGGTGTCTCTTCCCTT
CCTCTTCTCTTCTCATATTTTAATACACATCCCTCGTTCGTCATTCACTC
AATCGGCTGCCTTCCCGCGTGTTGCTCGCCGAAGTACATATACACGATTT
TACGCACACTTACACACAACAAACAAATTGAGGATAATCAGCAGTAGCTG
CAGGAAGGAGGAGGAAGCAAAGGAAGGAGGGAGGGAAGAAGGTAAATTGG
CAGGAGAAAAGTTAAGCTGAGAGAGAAAGAGAATCAATACTTAAACAGGA
AAGCAAGAAAGTAAAAAGAAAGAAAAAAAGAGAGCCCTGCGACTTTTCAT
TCGTTTACACGTG back to topprotein sequence of jgi.p|Nanoce1779_2|591707 >mRNA_5196-protein ID=mRNA_5196-protein|Name=jgi.p|Nanoce1779_2|591707|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MDPIQNKVAELSIVTRGTPIADRGVIHPGIVNIRVLAAKGIKSLEILGKP
DTYVVVRYGGEEHRTKEVDDCEDPIYEDDWVSTGGMAVNEFVEVSIMEKY
TVRDKELGSLKFPADSFAHNILEASWFELERDGEVCGEVCLAARFTPVVC
SGMGRSGSNSSSSNRFGVGSVEQAVQYFSGPRPWYMRGGFYYDLSKRVYR
RVKHIPLVGLGPSMGECVVEGVLTHIVLRKQPGEMVATESGIARLDHVVT
GLITTIDVGIDQTKDQVLKKAVALKKQMTGEMVVVEPPAQQQQKQQMKKS
SGIIWGLVEGTVAHVARPVTSYVPIVGGLGVQILDYIVPPPPPTEMSLEA
RMSAAATTAADSASTEGGASPIPTADVSAFDKPIRKSKMSASGF* back to topmRNA from alignment at scaffold_12:711751..713825- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5196 ID=mRNA_5196|Name=jgi.p|Nanoce1779_2|591707|organism=Nannochloropsis oceanica|type=mRNA|length=2075bp|location=Sequence derived from alignment at scaffold_12:711751..713825- (Nannochloropsis oceanica)
ACAGGGTGCACGTCTTATCACGACATTCCAATGGACCCCATTCAGAACAA
GGTAGCCGAGCTCTCCATCGTTACGCGCGGGACACCGATAGCCGACCGCG
GCGTCATCCATCCCGGGATTGTCAATATTCGAGGTAAGGAGGACTAAGCA
AGAAAGCTTGAATGGAGGACCCGCAAGACGAGTGCGTGAGCTATTTGATG
GAGTGCAGAATAAGAGGACGATTGAGAGAAGGATTTGGAGAGGAGGGCGG
CAGCAAGGTGGTGAAACACGCGTGAACAGTGCCTCGGGGGTGGCGATAAA
AGCAAGCTGAGAATGGCCACAAAGGCAGCAGCAAGAACAAATCCAAGTGC
ACTCAGCTTTTTCCTCCTATCACACATCCCTTTACACCATACATCTAGTG
TTGGCAGCGAAAGGTATCAAATCCCTGGAGATCCTGGGCAAACCCGATAC
CTACGTGGTGGTGCGGTACGGCGGCGAGGAGCATAGGACCAAGGAGGTGG
ACGACTGCGAAGACCCGATCTACGAGGATGACTGGGTGTCGACCGGGGGT
ATGGCTGTAAATGAGTTTGTAGAAGTGTCAATTATGGAGAAGTACACAGT
GCGGGACAAGGAGCTGGGCAGCCTCAAATGTACGTGGGGTAGCTCGAACA
TCCGTGTGTGTCTTTGCGTGTGTCTATTTTATACATTCGTAGATTTTTCA
ATTTGGGACTCTCTTATATGACTCTCCTTCTTTTGTCTACCCATCCTTTT
CTCTTATCCTATCACTTCATCTCCCTCATTTATTCCTGTCCTCCCTCCCC
CCCTCCCCTAACACCCCCTCCTCCAGTCCCCGCGGACTCATTCGCGCATA
ATATACTAGAGGCCTCCTGGTTCGAGCTGGAACGCGATGGCGAGGTGTGT
GGGGAAGTGTGCCTTGCCGCCCGCTTCACCCCTGTTGTCTGCAGTGGCAT
GGGAAGGTCAGGGAGCAACAGCAGCAGCAGCAACCGCTTTGGGGTCGGAT
CTGTCGAACAAGCTGTGCAATATTTTTCGGGGCCGCGACCTTGGTACATG
CGTGGCGGCTTTTACTATGACCTAAGCAAGCGGGTGTATCGACGTGTGAA
GCACATCCCGCTCGTGGGGTTGGGACCGTCGATGGGGGAGTGTGTCGTGG
AAGGGGTGCTCACTCACATTGTTTTGCGGAAGCAACCCGGGGAGATGGTG
GCGACGGAGAGCGGCATTGCACGGCTGGACCACGTCGTGACTGGGCTGAT
TACGACGATTGATGTGGGCATCGATCAGACCAAAGACCAGGTCTTGAAGA
AGGCGGTGGCATTGAAGAAACAGATGACTGGGGAGATGGTCGTCGTCGAG
CCCCCGGCGCAACAGCAGCAGAAGCAGCAGATGAAGAAGAGTAGTGGGAT
CATTTGGGGGCTAGTGGAAGGGACTGTGGCCCATGTGGCCAGGCCGGTGA
CAAGCTACGTGCCGATTGTGGGAGGGTTGGGAGTACAGATTCTTGATTAC
ATCGTCCCTCCCCCGCCACCCACCGAGATGAGCTTGGAGGCGAGGATGTC
TGCTGCTGCCACTACTGCCGCTGATTCTGCTTCGACGGAAGGAGGGGCAA
GCCCTATTCCTACAGCTGATGTATCGGCGTTTGACAAGCCCATAAGGAAG
AGCAAGATGTCCGCCAGCGGATTCTGAGAAAATTTGCCCTTCATCCCTCC
CTCCCTCCATCCCTCTCTCCCTCCTTATTCTACCACACCTATAGAGAGGT
GTCTCTTCCCTTCCTCTTCTCTTCTCATATTTTAATACACATCCCTCGTT
CGTCATTCACTCAATCGGCTGCCTTCCCGCGTGTTGCTCGCCGAAGTACA
TATACACGATTTTACGCACACTTACACACAACAAACAAATTGAGGATAAT
CAGCAGTAGCTGCAGGAAGGAGGAGGAAGCAAAGGAAGGAGGGAGGGAAG
AAGGTAAATTGGCAGGAGAAAAGTTAAGCTGAGAGAGAAAGAGAATCAAT
ACTTAAACAGGAAAGCAAGAAAGTAAAAAGAAAGAAAAAAAGAGAGCCCT
GCGACTTTTCATTCGTTTACACGTG back to topCoding sequence (CDS) from alignment at scaffold_12:711751..713825- >mRNA_5196 ID=mRNA_5196|Name=jgi.p|Nanoce1779_2|591707|organism=Nannochloropsis oceanica|type=CDS|length=3555bp|location=Sequence derived from alignment at scaffold_12:711751..713825- (Nannochloropsis oceanica)
TCCCCGCGGACTCATTCGCGCATAATATACTAGAGGCCTCCTGGTTCGAG
CTGGAACGCGATGGCGAGGTGTGTGGGGAAGTGTGCCTTGCCGCCCGCTT
CACCCCTGTTGTCTGCAGTGGCATGGGAAGGTCAGGGAGCAACAGCAGCA
GCAGCAACCGCTTTGGGGTCGGATCTGTCGAACAAGCTGTGCAATATTTT
TCGGGGCCGCGACCTTGGTACATGCGTGGCGGCTTTTACTATGACCTAAG
CAAGCGGGTGTATCGACGTGTGAAGCACATCCCGCTCGTGGGGTTGGGAC
CGTCGATGGGGGAGTGTGTCGTGGAAGGGGTGCTCACTCACATTGTTTTG
CGGAAGCAACCCGGGGAGATGGTGGCGACGGAGAGCGGCATTGCACGGCT
GGACCACGTCGTGACTGGGCTGATTACGACGATTGATGTGGGCATCGATC
AGACCAAAGACCAGGTCTTGAAGAAGGCGGTGGCATTGAAGAAACAGATG
ACTGGGGAGATGGTCGTCGTCGAGCCCCCGGCGCAACAGCAGCAGAAGCA
GCAGATGAAGAAGAGTAGTGGGATCATTTGGGGGCTAGTGGAAGGGACTG
TGGCCCATGTGGCCAGGCCGGTGACAAGCTACGTGCCGATTGTGGGAGGG
TTGGGAGTACAGATTCTTGATTACATCGTCCCTCCCCCGCCACCCACCGA
GATGAGCTTGGAGGCGAGGATGTCTGCTGCTGCCACTACTGCCGCTGATT
CTGCTTCGACGGAAGGAGGGGCAAGCCCTATTCCTACAGCTGATGTATCG
GCGTTTGACAAGCCCATAAGGAAGAGCAAGATGTCCGCCAGCGGATTCTG
ATGTTGGCAGCGAAAGGTATCAAATCCCTGGAGATCCTGGGCAAACCCGA
TACCTACGTGGTGGTGCGGTACGGCGGCGAGGAGCATAGGACCAAGGAGG
TGGACGACTGCGAAGACCCGATCTACGAGGATGACTGGGTGTCGACCGGG
GGTATGGCTGTAAATGAGTTTGTAGAAGTGTCAATTATGGAGAAGTACAC
AGTGCGGGACAAGGAGCTGGGCAGCCTCAAATATGGACCCCATTCAGAAC
AAGGTAGCCGAGCTCTCCATCGTTACGCGCGGGACACCGATAGCCGACCG
CGGCGTCATCCATCCCGGGATTGTCAATATTCGAGTCCCCGCGGACTCAT
TCGCGCATAATATACTAGAGGCCTCCTGGTTCGAGCTGGAACGCGATGGC
GAGGTGTGTGGGGAAGTGTGCCTTGCCGCCCGCTTCACCCCTGTTGTCTG
CAGTGGCATGGGAAGGTCAGGGAGCAACAGCAGCAGCAGCAACCGCTTTG
GGGTCGGATCTGTCGAACAAGCTGTGCAATATTTTTCGGGGCCGCGACCT
TGGTACATGCGTGGCGGCTTTTACTATGACCTAAGCAAGCGGGTGTATCG
ACGTGTGAAGCACATCCCGCTCGTGGGGTTGGGACCGTCGATGGGGGAGT
GTGTCGTGGAAGGGGTGCTCACTCACATTGTTTTGCGGAAGCAACCCGGG
GAGATGGTGGCGACGGAGAGCGGCATTGCACGGCTGGACCACGTCGTGAC
TGGGCTGATTACGACGATTGATGTGGGCATCGATCAGACCAAAGACCAGG
TCTTGAAGAAGGCGGTGGCATTGAAGAAACAGATGACTGGGGAGATGGTC
GTCGTCGAGCCCCCGGCGCAACAGCAGCAGAAGCAGCAGATGAAGAAGAG
TAGTGGGATCATTTGGGGGCTAGTGGAAGGGACTGTGGCCCATGTGGCCA
GGCCGGTGACAAGCTACGTGCCGATTGTGGGAGGGTTGGGAGTACAGATT
CTTGATTACATCGTCCCTCCCCCGCCACCCACCGAGATGAGCTTGGAGGC
GAGGATGTCTGCTGCTGCCACTACTGCCGCTGATTCTGCTTCGACGGAAG
GAGGGGCAAGCCCTATTCCTACAGCTGATGTATCGGCGTTTGACAAGCCC
ATAAGGAAGAGCAAGATGTCCGCCAGCGGATTCTGATGTTGGCAGCGAAA
GGTATCAAATCCCTGGAGATCCTGGGCAAACCCGATACCTACGTGGTGGT
GCGGTACGGCGGCGAGGAGCATAGGACCAAGGAGGTGGACGACTGCGAAG
ACCCGATCTACGAGGATGACTGGGTGTCGACCGGGGGTATGGCTGTAAAT
GAGTTTGTAGAAGTGTCAATTATGGAGAAGTACACAGTGCGGGACAAGGA
GCTGGGCAGCCTCAAATATGGACCCCATTCAGAACAAGGTAGCCGAGCTC
TCCATCGTTACGCGCGGGACACCGATAGCCGACCGCGGCGTCATCCATCC
CGGGATTGTCAATATTCGAGTCCCCGCGGACTCATTCGCGCATAATATAC
TAGAGGCCTCCTGGTTCGAGCTGGAACGCGATGGCGAGGTGTGTGGGGAA
GTGTGCCTTGCCGCCCGCTTCACCCCTGTTGTCTGCAGTGGCATGGGAAG
GTCAGGGAGCAACAGCAGCAGCAGCAACCGCTTTGGGGTCGGATCTGTCG
AACAAGCTGTGCAATATTTTTCGGGGCCGCGACCTTGGTACATGCGTGGC
GGCTTTTACTATGACCTAAGCAAGCGGGTGTATCGACGTGTGAAGCACAT
CCCGCTCGTGGGGTTGGGACCGTCGATGGGGGAGTGTGTCGTGGAAGGGG
TGCTCACTCACATTGTTTTGCGGAAGCAACCCGGGGAGATGGTGGCGACG
GAGAGCGGCATTGCACGGCTGGACCACGTCGTGACTGGGCTGATTACGAC
GATTGATGTGGGCATCGATCAGACCAAAGACCAGGTCTTGAAGAAGGCGG
TGGCATTGAAGAAACAGATGACTGGGGAGATGGTCGTCGTCGAGCCCCCG
GCGCAACAGCAGCAGAAGCAGCAGATGAAGAAGAGTAGTGGGATCATTTG
GGGGCTAGTGGAAGGGACTGTGGCCCATGTGGCCAGGCCGGTGACAAGCT
ACGTGCCGATTGTGGGAGGGTTGGGAGTACAGATTCTTGATTACATCGTC
CCTCCCCCGCCACCCACCGAGATGAGCTTGGAGGCGAGGATGTCTGCTGC
TGCCACTACTGCCGCTGATTCTGCTTCGACGGAAGGAGGGGCAAGCCCTA
TTCCTACAGCTGATGTATCGGCGTTTGACAAGCCCATAAGGAAGAGCAAG
ATGTCCGCCAGCGGATTCTGATGTTGGCAGCGAAAGGTATCAAATCCCTG
GAGATCCTGGGCAAACCCGATACCTACGTGGTGGTGCGGTACGGCGGCGA
GGAGCATAGGACCAAGGAGGTGGACGACTGCGAAGACCCGATCTACGAGG
ATGACTGGGTGTCGACCGGGGGTATGGCTGTAAATGAGTTTGTAGAAGTG
TCAATTATGGAGAAGTACACAGTGCGGGACAAGGAGCTGGGCAGCCTCAA
ATATGGACCCCATTCAGAACAAGGTAGCCGAGCTCTCCATCGTTACGCGC
GGGACACCGATAGCCGACCGCGGCGTCATCCATCCCGGGATTGTCAATAT
TCGAG back to top
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