Properties
Property Name | Value |
TranscriptId | 630958 |
Track | FilteredModels2 |
ProteinId | 630872 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_12 | supercontig | scaffold_12:707984..711682 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5195 ID=mRNA_5195|Name=jgi.p|Nanoce1779_2|630872|organism=Nannochloropsis oceanica|type=mRNA|length=3699bp CCATTCCTAAACCAGCAATGGATGGCATCACTGCTTATCCACGCCAAATT CCTTCACATGAAGGATGAGAAGGATAAGCGGAGCTTTTTCTGCGTTGCTC ATTTTCATTTCGTGAAGACTTTGTCAAAACATTTCCTGCCGCTCATCATA AGGCTCCTCGACTCTCATCCCTTCAACTTGCCAAAGGCAGTGCCCTTCCA CACACCACACTCACAGGGGTCGTGCACACACAAGACACACGCATTACAGG CCCTTACTATAACCAGATAAGACGGCAAGGATGGCCTCGTCGGCAGCGTC GAGAAGAGTTTGGTTTTTGCCACTGCCTACGTCCCTGGTGCTGGTGCTTC TTGTGCTAGCCTCGTGCCAAATGATGGTTCGAGTAGTGGAAGGAAGGACG TCGTCTTTACAATTGCGCGTATGTGGTGGATTTTGCGGACGAAATGGGCC CAATCCCTCTTCTACTACACCGTCTGCTTTGCTGTGGGGTGTCCGCGGCG GCGCTGCTTCGCCTGACGATGAAGAAGGTGAGGACGCAGGTGCTGCTGCA GCTTCTGCTGCTGCCGCAGCGGGGAAAGACCATCCTCACTCTCAGCACTC CCACGCGCACCATTCGCACGGAGAACACTGCAACCATGAGAATAACCATG CAGCAGCAACGCCCGCCATCCCTCCTGGGATGGTCTGCGACGGCGACGTC TGCTACATGCCCGGCAATCCCAGCGCATCCGCCACTGCTGCTCCTGCTGC CCCCACTGCTCCTGCTGCTTATACAGACAAGCCCCACCCTGATTACTTCT CTGTGCAAGTGCATGAATTGGTGGGTAAAGGACATACTGCTCAGGAGGCT GAGCAGGCTTTGCATGCAGCTCGCTATGATGTAGCGGCTGCGGCGGCAAT GCTCGAGGGAAATGAGAAAGGTCGACGCACTCACATCGAAGGAGGAGAAG GAGTTGGAGGTAGAGGTGGAGGTGGAGTTACAGAAGCAGTAACACCTCGA TCCTCTCCACCATCTTCTGAAGAACCGCAGGCACCTGCGGCAACACCACC AAAAGTACCAGCGGCACCTTATTCTTCTCCTTCCCCGGCCCATGCACCAG CGCCAGCTGCCCCCGCCCCTCCCACAGCCGCCAGCACGCCTCCTCCTCCT CCACCTCCTCCTCCTCCTGTATTTTCCACCCCACCTCCTCCGTCTCCCTC CTCGCCTTCTTCCGAAGACGAGACAAAGGCCGAAAAGATCCACATCCCTC CCGCATACGTCGATGGAGTCAACACCTTAATCGCCAAGGGTCTCTCCCAA ACCGACGCCCTCGAGCTCCTCACAATGGCCAAAGGTGATCTCCCCACAGC ATTTGAAATTCTTGACCAAGACAGTATGGCGCGGGACCTCGATGCTGCCG TGGAGGAGATGGTAAAGGAAGGGTGGGATGAGGACGTGGCCCGACAGGCC CTTTTAGCCCAGCGGGAGAAATCCAAAAACACGCCAGCTGCAGCTGTCAC TGTTGCTACTACTACCGCTGCTGCCCCAACTCCTACTCCTCCTGCTTCTG CGGCCAAAAAGCCGGCAGCACCAGCGAAAAAGAAGGCGGGGCCAGCCAAG CCTTCCGTCCCAGCGGTGAAAAGGGAGGATGTAGTGTTTGAGAGTACGGA AGCGGACCTCCAGAGTTTGGTTATAGAGTCCCCTGTGCCTGTTTTGCTTG ACGTGTACGCGGATTGGTGTGGACCGTGCAAGCAATTAGGACCCATGTTG GAGGAGCTGGCCGTTAAATCAGGAGGAATGTTCCGACTCGTGAAGGTGGA CTCGGATAAAAATCGGGGAGTGAGTGACATGCTGTCCGTGCAGGCCCTGC CGTCGGTGTTTGCGTTCAGAGAGGGGGAATTGGTGGATTGCTTTGTGGGG ATGCCGCCCCAGGCGACGCTTCAGGACTTTATGATGCGCTTGTTGATGGG CTCGAAGAGGCCAGAGGTTGATTTAGTCAAGGATCCCAATGCCAAGACAG AGGAAAACTTGAAGAGGATGGGGGGGAAGCTGGCGCATCTTGTGGGATTG GCCTCGTTCGGTGCCGCGAGGAAGGAAAAGCTTGAACGGGCTGTGGGAGG ACTGGTGGAGGAGGTGATTCAGTTGGGCGAGGAGGGGGGGGGACGGGGGG GAGGAAGGGCGAGGGAGGGAGGGGGCGATGAGAGCAATAAAGACAGTGAG TGCCTATTTGTCCAACTTGATGAAACATTTTGGGGGGAAGGAGGGGGAGA AATTCAGAAGTATTAATATGGAAAAAGAAGCGTTTCAATCACGCCTAGGA CCGTACCCGCCCGCGATTCGGATCTTGGAAAAAGTGGGCTTTCGGGACGA GGGAGGACGAGGGACGTTGATCCTCAAGCACAGGAATAGAGCTCCTATCA TTGCCGCAGAGCAGGTAATTGGCAAATTTTTGGCGAGAGTCAGGATAGGA GGCGGGGGAAGGCCGGGGGGGTGGAGTGGAGGAGCAGGAGGGGCACCGAT TTTCAGGAGTAAATCCTTGAGGCGGCCGGCGCCCGTGAAGGCTGCTAATG CAAATGCTGGATCTCCGAAAACAGCGGCTGATGGAGGCAAGAAGGGCAGT AGTACGATCTCTGTTCCTGATGCTTCCTCTGCTGTCAAGCCAAAACCCGC TGCTGCTGCTGCTACAGCTCCCGGTGGAATGCCAGCATCCAAACCTCAGA TGGTGCCTCGTCGGGCTTTCACTGCTCTCTCCATTCGCCTGCCGGATGGA AGCATCTTAAAGACAGGTCTTGGACCCACGGCTACCCTCGATGACGTTTT CAAAAAAGTCCGGATGGACAAGGAAAAAGAAACCGCGAAAGCAGCCGTGG GTGGATTAAAACTCGTGGCCCGCGTGCCGGTGGTAAGGACGTACCTGGAA GGAGGGAAAGAGGGAGGGAAGAAGCTAGGAGACCTCGAAATTGGTGGTGG GGAAGTCATTTTGAGTTTGGTAATCGTGTCCCCGGTAATGGAGGAAGGGA AAGAGGGAGGGAAGGAGGGGAGGAAGGAGAGGAAGGTGGTGTCGGCGGAT GTGCTGGCTGCAAAAGCGAAGGCGAAAAAGGAGAAGCCAAGGAGAGGAGG CGCACATACTTTGTTTTCAGAGGGACATTTGGATGAAGTCCAGACGAAAG GAAATAGATACTATGGAGGAGGATCGACTTATTACGAAGCTAGTGTGGAT GAGGAGGGCGAGGATGGGAGGGAGAAAGAGAAGGAGGCAGGGGGAGAAAT TGCGGGGGAGGGGAAGAGTGAAAGAGTGGAGAAAGGAGAAAAGGAGGTGA ACAAAGAGGTGGAGGTCGTAGCAGAGGAGGACGAGGACGAGGATGAAGAT AATGATGATGATGATGATGAGGACGAGGACGAGGACGAGGACGAGGAAGA CGACGAGAAAGACGACGAGGACGAGGAAGACGACGACGACGAGGACGAGG AGGAGGATGAAAGTGACGATGAGGAAGAGGAGGAGGAGGAGGACGAGGAG GACGAGGATGAGGAGGACCAAGAGGAGGACGACGACGATGATGAGGATGA GGATGAGGATGACGACGACGACGACGACGACGAGGACGACGACGACGCCG ACGACGACGAGGAGGAGGACGACGACGACGACGACGAATAAAACCCAGCA CACACCTCGTGTCTGTGCGACGCCGATAAAGTACCAAAGCATCACAGCT back to topprotein sequence of jgi.p|Nanoce1779_2|630872 >mRNA_5195-protein ID=mRNA_5195-protein|Name=jgi.p|Nanoce1779_2|630872|organism=Nannochloropsis oceanica|type=polypeptide|length=662bp MASSAASRRVWFLPLPTSLVLVLLVLASCQMMVRVVEGRTSSLQLRVCGG FCGRNGPNPSSTTPSALLWGVRGGAASPDDEEGEDAGAAAASAAAAAGKD HPHSQHSHAHHSHGEHCNHENNHAAATPAIPPGMVCDGDVCYMPGNPSAS ATAAPAAPTAPAAYTDKPHPDYFSVQVHELVGKGHTAQEAEQALHAARYD VAAAAAMLEGNEKGRRTHIEGGEGVGGRGGGGVTEAVTPRSSPPSSEEPQ APAATPPKVPAAPYSSPSPAHAPAPAAPAPPTAASTPPPPPPPPPPVFST PPPPSPSSPSSEDETKAEKIHIPPAYVDGVNTLIAKGLSQTDALELLTMA KGDLPTAFEILDQDSMARDLDAAVEEMVKEGWDEDVARQALLAQREKSKN TPAAAVTVATTTAAAPTPTPPASAAKKPAAPAKKKAGPAKPSVPAVKRED VVFESTEADLQSLVIESPVPVLLDVYADWCGPCKQLGPMLEELAVKSGGM FRLVKVDSDKNRGVSDMLSVQALPSVFAFREGELVDCFVGMPPQATLQDF MMRLLMGSKRPEVDLVKDPNAKTEENLKRMGGKLAHLVGLASFGAARKEK LERAVGGLVEEVIQLGEEGGGRGGGRAREGGGDESNKDSECLFVQLDETF WGEGGGEIQKY* back to topmRNA from alignment at scaffold_12:707984..711682+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5195 ID=mRNA_5195|Name=jgi.p|Nanoce1779_2|630872|organism=Nannochloropsis oceanica|type=mRNA|length=3699bp|location=Sequence derived from alignment at scaffold_12:707984..711682+ (Nannochloropsis oceanica) CCATTCCTAAACCAGCAATGGATGGCATCACTGCTTATCCACGCCAAATT
CCTTCACATGAAGGATGAGAAGGATAAGCGGAGCTTTTTCTGCGTTGCTC
ATTTTCATTTCGTGAAGACTTTGTCAAAACATTTCCTGCCGCTCATCATA
AGGCTCCTCGACTCTCATCCCTTCAACTTGCCAAAGGCAGTGCCCTTCCA
CACACCACACTCACAGGGGTCGTGCACACACAAGACACACGCATTACAGG
CCCTTACTATAACCAGATAAGACGGCAAGGATGGCCTCGTCGGCAGCGTC
GAGAAGAGTTTGGTTTTTGCCACTGCCTACGTCCCTGGTGCTGGTGCTTC
TTGTGCTAGCCTCGTGCCAAATGATGGTTCGAGTAGTGGAAGGAAGGACG
TCGTCTTTACAATTGCGCGTATGTGGTGGATTTTGCGGACGAAATGGGCC
CAATCCCTCTTCTACTACACCGTCTGCTTTGCTGTGGGGTGTCCGCGGCG
GCGCTGCTTCGCCTGACGATGAAGAAGGTGAGGACGCAGGTGCTGCTGCA
GCTTCTGCTGCTGCCGCAGCGGGGAAAGACCATCCTCACTCTCAGCACTC
CCACGCGCACCATTCGCACGGAGAACACTGCAACCATGAGAATAACCATG
CAGCAGCAACGCCCGCCATCCCTCCTGGGATGGTCTGCGACGGCGACGTC
TGCTACATGCCCGGCAATCCCAGCGCATCCGCCACTGCTGCTCCTGCTGC
CCCCACTGCTCCTGCTGCTTATACAGACAAGCCCCACCCTGATTACTTCT
CTGTGCAAGTGCATGAATTGGTGGGTAAAGGACATACTGCTCAGGAGGCT
GAGCAGGCTTTGCATGCAGCTCGCTATGATGTAGCGGCTGCGGCGGCAAT
GCTCGAGGGAAATGAGAAAGGTCGACGCACTCACATCGAAGGAGGAGAAG
GAGTTGGAGGTAGAGGTGGAGGTGGAGTTACAGAAGCAGTAACACCTCGA
TCCTCTCCACCATCTTCTGAAGAACCGCAGGCACCTGCGGCAACACCACC
AAAAGTACCAGCGGCACCTTATTCTTCTCCTTCCCCGGCCCATGCACCAG
CGCCAGCTGCCCCCGCCCCTCCCACAGCCGCCAGCACGCCTCCTCCTCCT
CCACCTCCTCCTCCTCCTGTATTTTCCACCCCACCTCCTCCGTCTCCCTC
CTCGCCTTCTTCCGAAGACGAGACAAAGGCCGAAAAGATCCACATCCCTC
CCGCATACGTCGATGGAGTCAACACCTTAATCGCCAAGGGTCTCTCCCAA
ACCGACGCCCTCGAGCTCCTCACAATGGCCAAAGGTGATCTCCCCACAGC
ATTTGAAATTCTTGACCAAGACAGTATGGCGCGGGACCTCGATGCTGCCG
TGGAGGAGATGGTAAAGGAAGGGTGGGATGAGGACGTGGCCCGACAGGCC
CTTTTAGCCCAGCGGGAGAAATCCAAAAACACGCCAGCTGCAGCTGTCAC
TGTTGCTACTACTACCGCTGCTGCCCCAACTCCTACTCCTCCTGCTTCTG
CGGCCAAAAAGCCGGCAGCACCAGCGAAAAAGAAGGCGGGGCCAGCCAAG
CCTTCCGTCCCAGCGGTGAAAAGGGAGGATGTAGTGTTTGAGAGTACGGA
AGCGGACCTCCAGAGTTTGGTTATAGAGTCCCCTGTGCCTGTTTTGCTTG
ACGTGTACGCGGATTGGTGTGGACCGTGCAAGCAATTAGGACCCATGTTG
GAGGAGCTGGCCGTTAAATCAGGAGGAATGTTCCGACTCGTGAAGGTGGA
CTCGGATAAAAATCGGGGAGTGAGTGACATGCTGTCCGTGCAGGCCCTGC
CGTCGGTGTTTGCGTTCAGAGAGGGGGAATTGGTGGATTGCTTTGTGGGG
ATGCCGCCCCAGGCGACGCTTCAGGACTTTATGATGCGCTTGTTGATGGG
CTCGAAGAGGCCAGAGGTTGATTTAGTCAAGGATCCCAATGCCAAGACAG
AGGAAAACTTGAAGAGGATGGGGGGGAAGCTGGCGCATCTTGTGGGATTG
GCCTCGTTCGGTGCCGCGAGGAAGGAAAAGCTTGAACGGGCTGTGGGAGG
ACTGGTGGAGGAGGTGATTCAGTTGGGCGAGGAGGGGGGGGGACGGGGGG
GAGGAAGGGCGAGGGAGGGAGGGGGCGATGAGAGCAATAAAGACAGTGAG
TGCCTATTTGTCCAACTTGATGAAACATTTTGGGGGGAAGGAGGGGGAGA
AATTCAGAAGTATTAATATGGAAAAAGAAGCGTTTCAATCACGCCTAGGA
CCGTACCCGCCCGCGATTCGGATCTTGGAAAAAGTGGGCTTTCGGGACGA
GGGAGGACGAGGGACGTTGATCCTCAAGCACAGGAATAGAGCTCCTATCA
TTGCCGCAGAGCAGGTAATTGGCAAATTTTTGGCGAGAGTCAGGATAGGA
GGCGGGGGAAGGCCGGGGGGGTGGAGTGGAGGAGCAGGAGGGGCACCGAT
TTTCAGGAGTAAATCCTTGAGGCGGCCGGCGCCCGTGAAGGCTGCTAATG
CAAATGCTGGATCTCCGAAAACAGCGGCTGATGGAGGCAAGAAGGGCAGT
AGTACGATCTCTGTTCCTGATGCTTCCTCTGCTGTCAAGCCAAAACCCGC
TGCTGCTGCTGCTACAGCTCCCGGTGGAATGCCAGCATCCAAACCTCAGA
TGGTGCCTCGTCGGGCTTTCACTGCTCTCTCCATTCGCCTGCCGGATGGA
AGCATCTTAAAGACAGGTCTTGGACCCACGGCTACCCTCGATGACGTTTT
CAAAAAAGTCCGGATGGACAAGGAAAAAGAAACCGCGAAAGCAGCCGTGG
GTGGATTAAAACTCGTGGCCCGCGTGCCGGTGGTAAGGACGTACCTGGAA
GGAGGGAAAGAGGGAGGGAAGAAGCTAGGAGACCTCGAAATTGGTGGTGG
GGAAGTCATTTTGAGTTTGGTAATCGTGTCCCCGGTAATGGAGGAAGGGA
AAGAGGGAGGGAAGGAGGGGAGGAAGGAGAGGAAGGTGGTGTCGGCGGAT
GTGCTGGCTGCAAAAGCGAAGGCGAAAAAGGAGAAGCCAAGGAGAGGAGG
CGCACATACTTTGTTTTCAGAGGGACATTTGGATGAAGTCCAGACGAAAG
GAAATAGATACTATGGAGGAGGATCGACTTATTACGAAGCTAGTGTGGAT
GAGGAGGGCGAGGATGGGAGGGAGAAAGAGAAGGAGGCAGGGGGAGAAAT
TGCGGGGGAGGGGAAGAGTGAAAGAGTGGAGAAAGGAGAAAAGGAGGTGA
ACAAAGAGGTGGAGGTCGTAGCAGAGGAGGACGAGGACGAGGATGAAGAT
AATGATGATGATGATGATGAGGACGAGGACGAGGACGAGGACGAGGAAGA
CGACGAGAAAGACGACGAGGACGAGGAAGACGACGACGACGAGGACGAGG
AGGAGGATGAAAGTGACGATGAGGAAGAGGAGGAGGAGGAGGACGAGGAG
GACGAGGATGAGGAGGACCAAGAGGAGGACGACGACGATGATGAGGATGA
GGATGAGGATGACGACGACGACGACGACGACGAGGACGACGACGACGCCG
ACGACGACGAGGAGGAGGACGACGACGACGACGACGAATAAAACCCAGCA
CACACCTCGTGTCTGTGCGACGCCGATAAAGTACCAAAGCATCACAGCT back to topCoding sequence (CDS) from alignment at scaffold_12:707984..711682+ >mRNA_5195 ID=mRNA_5195|Name=jgi.p|Nanoce1779_2|630872|organism=Nannochloropsis oceanica|type=CDS|length=1986bp|location=Sequence derived from alignment at scaffold_12:707984..711682+ (Nannochloropsis oceanica) ATGGCCTCGTCGGCAGCGTCGAGAAGAGTTTGGTTTTTGCCACTGCCTAC GTCCCTGGTGCTGGTGCTTCTTGTGCTAGCCTCGTGCCAAATGATGGTTC GAGTAGTGGAAGGAAGGACGTCGTCTTTACAATTGCGCGTATGTGGTGGA TTTTGCGGACGAAATGGGCCCAATCCCTCTTCTACTACACCGTCTGCTTT GCTGTGGGGTGTCCGCGGCGGCGCTGCTTCGCCTGACGATGAAGAAGGTG AGGACGCAGGTGCTGCTGCAGCTTCTGCTGCTGCCGCAGCGGGGAAAGAC CATCCTCACTCTCAGCACTCCCACGCGCACCATTCGCACGGAGAACACTG CAACCATGAGAATAACCATGCAGCAGCAACGCCCGCCATCCCTCCTGGGA TGGTCTGCGACGGCGACGTCTGCTACATGCCCGGCAATCCCAGCGCATCC GCCACTGCTGCTCCTGCTGCCCCCACTGCTCCTGCTGCTTATACAGACAA GCCCCACCCTGATTACTTCTCTGTGCAAGTGCATGAATTGGTGGGTAAAG GACATACTGCTCAGGAGGCTGAGCAGGCTTTGCATGCAGCTCGCTATGAT GTAGCGGCTGCGGCGGCAATGCTCGAGGGAAATGAGAAAGGTCGACGCAC TCACATCGAAGGAGGAGAAGGAGTTGGAGGTAGAGGTGGAGGTGGAGTTA CAGAAGCAGTAACACCTCGATCCTCTCCACCATCTTCTGAAGAACCGCAG GCACCTGCGGCAACACCACCAAAAGTACCAGCGGCACCTTATTCTTCTCC TTCCCCGGCCCATGCACCAGCGCCAGCTGCCCCCGCCCCTCCCACAGCCG CCAGCACGCCTCCTCCTCCTCCACCTCCTCCTCCTCCTGTATTTTCCACC CCACCTCCTCCGTCTCCCTCCTCGCCTTCTTCCGAAGACGAGACAAAGGC CGAAAAGATCCACATCCCTCCCGCATACGTCGATGGAGTCAACACCTTAA TCGCCAAGGGTCTCTCCCAAACCGACGCCCTCGAGCTCCTCACAATGGCC AAAGGTGATCTCCCCACAGCATTTGAAATTCTTGACCAAGACAGTATGGC GCGGGACCTCGATGCTGCCGTGGAGGAGATGGTAAAGGAAGGGTGGGATG AGGACGTGGCCCGACAGGCCCTTTTAGCCCAGCGGGAGAAATCCAAAAAC ACGCCAGCTGCAGCTGTCACTGTTGCTACTACTACCGCTGCTGCCCCAAC TCCTACTCCTCCTGCTTCTGCGGCCAAAAAGCCGGCAGCACCAGCGAAAA AGAAGGCGGGGCCAGCCAAGCCTTCCGTCCCAGCGGTGAAAAGGGAGGAT GTAGTGTTTGAGAGTACGGAAGCGGACCTCCAGAGTTTGGTTATAGAGTC CCCTGTGCCTGTTTTGCTTGACGTGTACGCGGATTGGTGTGGACCGTGCA AGCAATTAGGACCCATGTTGGAGGAGCTGGCCGTTAAATCAGGAGGAATG TTCCGACTCGTGAAGGTGGACTCGGATAAAAATCGGGGAGTGAGTGACAT GCTGTCCGTGCAGGCCCTGCCGTCGGTGTTTGCGTTCAGAGAGGGGGAAT TGGTGGATTGCTTTGTGGGGATGCCGCCCCAGGCGACGCTTCAGGACTTT ATGATGCGCTTGTTGATGGGCTCGAAGAGGCCAGAGGTTGATTTAGTCAA GGATCCCAATGCCAAGACAGAGGAAAACTTGAAGAGGATGGGGGGGAAGC TGGCGCATCTTGTGGGATTGGCCTCGTTCGGTGCCGCGAGGAAGGAAAAG CTTGAACGGGCTGTGGGAGGACTGGTGGAGGAGGTGATTCAGTTGGGCGA GGAGGGGGGGGGACGGGGGGGAGGAAGGGCGAGGGAGGGAGGGGGCGATG AGAGCAATAAAGACAGTGAGTGCCTATTTGTCCAACTTGATGAAACATTT TGGGGGGAAGGAGGGGGAGAAATTCAGAAGTATTAA back to top
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