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Properties
| Property Name | Value |
|---|
| TranscriptId | 630956 |
| Track | FilteredModels2 |
| ProteinId | 630870 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:706029..708008 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5194 ID=mRNA_5194|Name=jgi.p|Nanoce1779_2|630870|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp
CCATCCATTGCTGGTTTAGGAATGGAGGGATTAGCAACGCTAGCTCGATC
TCTCTCTCTCTCTCTCATCTCTCTTTCCTGTGCGCTCGCTCAACACGCGC
CACCGTGTGACAACGGCCCATCGCAAGACACATGTCTCATGATGCCCCTC
CCTCTTTCCCCCCACCATCACGCTGCACAAAAGGTTTTGATTGGGCCAAG
ACCAGCAGCCGTACTCTGAGTGGATATCGGCTACACTGGGACTCCTCACG
ACGCTCCATCCCAAGCAAAGCCATGTCATCACCCTCGTCGCATTCGTGCG
CCGCCTCTCCGCCGCCGGACGTGGCAGTCTACTCCTTCCTGTCTGCTTAT
GACGACGACGAGAAGGAGGAGGATGATGATGATGAGGAGGAGAAGGAAGG
AGAGGAGGAGAGGGAGGATGAGGACGATCAGCAGCCTCAGGAGCGGGGGC
GACAAGAAGCGTCGGACGCCATGTCTGAATCTGGCGAGTGCTTCCTGGAC
CAGTTTGACGAACACTTACCCCAGCATCACCATCCCGCCGCGGCCGCATT
GTGGGAGGAAGACTCACCATATTTCGCAGAGCGGGCGCATAACTCGCTAC
GAGACGTTCAAGAATGCTCCAGCAACATCAAAGAGTTGATCAAGGGCATG
AAAGACCTCTGCAAGGCATCCACCACCATGAGCAACGCCTCCAAATCCCT
GGCCAAGAGTAATAAAGAAGTCGCCACGAAAATAGCCAGCCTCGGGGGAA
TAGAAGTTGTCCCTCTCCTCCACCGCTTCGCTAACACCCTGGATGAAATG
GCCACCGCACACGACATGCTTGTGCACTCCCTCACTCAATCCTTCGTCGT
CCCTCTGCAAACGTTCTGCAGAAACGAAGCAGACAAGGCCAGCGACTACG
AAAAAAGCTACCACTACGAAAAACATGCATTCACCGATTCCCTTGGCAAG
TTGCTTCGAGGACCCCTCAGACCCAGTAGCAAGACCCCTCCGGCCGTTGC
ACTCACGAACCGGGCACAGGACGTGGGGCTGAGACGGCGAGGCATGGAGC
AAGCACGACACCGACTTGCCCGTACAGTGGATTCGCTGGACGTGAGACGA
ACGTTGGAGTTGACGGAGGGAGTAGTTGCGGTCCTATTTGCATTTCAGGC
ACATCATTCGATGTTGGTGGATTCCATGTCGACGCTCGGCCCCTCCCTAG
AGGAGCTGAGGGCGTCTCAGAGCAAAGCCAGGGATGGTCTCAAGGTGGGA
GACGAGCAATGGGAACGACGGGCCGAGATGTTGGACATGCTGCTGCCAAC
AGAGGTGGCTGAACGGAGCGTGGACACGTGCGATGAAGCGCGATTCGCCC
ACCTCTCGACGGTGGAAGCTGCTGCGGTTAGCCCTCTTTCTACCTCTTTG
CTTGATCTGGTTGACCGGAGATTTGGAGTGTTGGAGATTCAGGAGAGTCT
TAGAAGGACTTTATTCCAGCCACGAGCGGCGCCGGGAGTGCACCACGAGA
GCTTTTTGCACATGCGAGTGCCTACAAAGGGACTAGCGGCCACGACGGCA
AGCTACACTTGGGCCCGTCGGTGGTTTGTTCTGGAGGGGAGTAGTCTCTA
CTATGTTAGGGAGAACGCGGGGGACATGCTGGGGGA back to topprotein sequence of jgi.p|Nanoce1779_2|630870 >mRNA_5194-protein ID=mRNA_5194-protein|Name=jgi.p|Nanoce1779_2|630870|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MSHDAPPSFPPPSRCTKGFDWAKTSSRTLSGYRLHWDSSRRSIPSKAMSS
PSSHSCAASPPPDVAVYSFLSAYDDDEKEEDDDDEEEKEGEEEREDEDDQ
QPQERGRQEASDAMSESGECFLDQFDEHLPQHHHPAAAALWEEDSPYFAE
RAHNSLRDVQECSSNIKELIKGMKDLCKASTTMSNASKSLAKSNKEVATK
IASLGGIEVVPLLHRFANTLDEMATAHDMLVHSLTQSFVVPLQTFCRNEA
DKASDYEKSYHYEKHAFTDSLGKLLRGPLRPSSKTPPAVALTNRAQDVGL
RRRGMEQARHRLARTVDSLDVRRTLELTEGVVAVLFAFQAHHSMLVDSMS
TLGPSLEELRASQSKARDGLKVGDEQWERRAEMLDMLLPTEVAERSVDTC
DEARFAHLSTVEAAAVSPLSTSLLDLVDRRFGVLEIQESLRRTLFQPRAA
PGVHHESFLHMRVPTKGLAATTASYTWARRWFVLEGSSLYYVRENAGDML
G back to topmRNA from alignment at scaffold_12:706029..708008- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5194 ID=mRNA_5194|Name=jgi.p|Nanoce1779_2|630870|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp|location=Sequence derived from alignment at scaffold_12:706029..708008- (Nannochloropsis oceanica)
CCATCCATTGCTGGTTTAGGAATGGAGGGATTAGCAACGCTAGCTCGATC
TCTCTCTCTCTCTCTCATCTCTCTTTCCTGTGCGCTCGCTCAACACGCGC
CACCGTGTGACAACGGCCCATCGCAAGACACATGTCTCATGATGCCCCTC
CCTCTTTCCCCCCACCATCACGCTGCACAAAAGGTTTTGATTGGGCCAAG
ACCAGCAGCCGTACTCTGAGTGGATATCGGCTACACTGGGACTCCTCACG
ACGCTCCATCCCAAGCAAAGCCATGTCATCACCCTCGTCGCATTCGTGCG
CCGCCTCTCCGCCGCCGGACGTGGCAGTCTACTCCTTCCTGTCTGCTTAT
GACGACGACGAGAAGGAGGAGGATGATGATGATGAGGAGGAGAAGGAAGG
AGAGGAGGAGAGGGAGGATGAGGACGATCAGCAGCCTCAGGAGCGGGGGC
GACAAGAAGCGTCGGACGCCATGTCTGAATCTGGCGAGTGCTTCCTGGAC
CAGTTTGACGAACACTTACCCCAGCATCACCATCCCGCCGCGGCCGCATT
GTGGGAGGAAGACTCACCATATTTCGCAGAGCGGGCGCATAACTCGGTAG
GTAATTCTCATCCCCCCTTTTCGTTGTTCTGGACGCTGTCAAAGACGTTG
CTGAGCCCAGTACCTTTCCATCCCTCCCTTCCCACATTGCAACCCTCCTT
CTCCCTTCCACACCATCCAATTCCATCACACCTCAACCCCAAAATCTATC
CAGCTACGAGACGTTCAAGAATGCTCCAGCAACATCAAAGAGTTGATCAA
GGGCATGAAAGACCTCTGCAAGGCATCCACCACCATGAGCAACGCCTCCA
AATCCCTGGCCAAGAGTAATAAAGAAGTCGCCACGAAAATAGCCAGCCTC
GGGGGAATAGAAGTTGTCCCTCTCCTCCACCGCTTCGCTAACACCCTGGA
TGAAATGGCCACCGCACACGACATGCTTGTGCACTCCCTCACTCAATCCT
TCGTCGTCCCTCTGCAAACGTTCTGCAGAAACGAAGCAGACAAGGCCAGC
GACTACGAAAAAAGCTACCACTACGAAAAACATGCATTCACCGATTCCCT
TGGCAAGTTGCTTCGAGGACCCCTCAGACCCAGTAGCAAGACCCCTCCGG
CCGTTGCACTCACGAACCGGGCACAGGACGTGGGGCTGAGACGGCGAGGC
ATGGAGCAAGCACGACACCGACTTGCCCGTACAGTGGATTCGCTGGACGT
GAGACGAACGTTGGAGTTGACGGAGGGAGTAGTTGCGGTCCTATTTGCAT
TTCAGGCACATCATTCGATGTTGGTGGATTCCATGTCGACGCTCGGCCCC
TCCCTAGAGGAGCTGAGGGCGTCTCAGAGCAAAGCCAGGGATGGTCTCAA
GGTGGGAGACGAGCAATGGGAACGACGGGCCGAGATGTTGGACATGCTGC
TGCCAACAGAGGTGGCTGAACGGAGCGTGGACACGTGCGATGAAGCGCGA
TTCGCCCACCTCTCGACGGTGGAAGCTGCTGCGGTTAGCCCTCTTTCTAC
CTCTTTGCTTGATCTGGTTGACCGGAGATTTGGAGTGTTGGAGATTCAGG
AGAGTCTTAGAAGGACTTTATTCCAGCCACGAGCGGCGCCGGGAGTGCAC
CACGAGAGCTTTTTGCACATGCGAGTGCCTACAAAGGGACTAGGTGGGTG
AGAGGGAGGGATGGGGGGAGGGAGGGGAGGTGGGAGGGCGAAAGGGGGGG
ATGGAGGGTAGCGAAGAGGGGGGACAGAGGAATAGTCCACATATGATTCA
TAAATTCTTCAAACCTGCCCTTTCCATCCACCTCTCTCTCTCCTTGCCCT
CCTCTCTCCCTCTTCTCTCCTCTCAATCAGCGGCCACGACGGCAAGCTAC
ACTTGGGCCCGTCGGTGGTTTGTTCTGGAGGGGAGTAGTCTCTACTATGT
TAGGGAGAACGCGGGGGACATGCTGGGGGA back to topCoding sequence (CDS) from alignment at scaffold_12:706029..708008- >mRNA_5194 ID=mRNA_5194|Name=jgi.p|Nanoce1779_2|630870|organism=Nannochloropsis oceanica|type=CDS|length=4509bp|location=Sequence derived from alignment at scaffold_12:706029..708008- (Nannochloropsis oceanica)
CGGCCACGACGGCAAGCTACACTTGGGCCCGTCGGTGGTTTGTTCTGGAG
GGGAGTAGTCTCTACTATGTTAGGGAGAACGCGGGGGACATGCTGGGGCT
ACGAGACGTTCAAGAATGCTCCAGCAACATCAAAGAGTTGATCAAGGGCA
TGAAAGACCTCTGCAAGGCATCCACCACCATGAGCAACGCCTCCAAATCC
CTGGCCAAGAGTAATAAAGAAGTCGCCACGAAAATAGCCAGCCTCGGGGG
AATAGAAGTTGTCCCTCTCCTCCACCGCTTCGCTAACACCCTGGATGAAA
TGGCCACCGCACACGACATGCTTGTGCACTCCCTCACTCAATCCTTCGTC
GTCCCTCTGCAAACGTTCTGCAGAAACGAAGCAGACAAGGCCAGCGACTA
CGAAAAAAGCTACCACTACGAAAAACATGCATTCACCGATTCCCTTGGCA
AGTTGCTTCGAGGACCCCTCAGACCCAGTAGCAAGACCCCTCCGGCCGTT
GCACTCACGAACCGGGCACAGGACGTGGGGCTGAGACGGCGAGGCATGGA
GCAAGCACGACACCGACTTGCCCGTACAGTGGATTCGCTGGACGTGAGAC
GAACGTTGGAGTTGACGGAGGGAGTAGTTGCGGTCCTATTTGCATTTCAG
GCACATCATTCGATGTTGGTGGATTCCATGTCGACGCTCGGCCCCTCCCT
AGAGGAGCTGAGGGCGTCTCAGAGCAAAGCCAGGGATGGTCTCAAGGTGG
GAGACGAGCAATGGGAACGACGGGCCGAGATGTTGGACATGCTGCTGCCA
ACAGAGGTGGCTGAACGGAGCGTGGACACGTGCGATGAAGCGCGATTCGC
CCACCTCTCGACGGTGGAAGCTGCTGCGGTTAGCCCTCTTTCTACCTCTT
TGCTTGATCTGGTTGACCGGAGATTTGGAGTGTTGGAGATTCAGGAGAGT
CTTAGAAGGACTTTATTCCAGCCACGAGCGGCGCCGGGAGTGCACCACGA
GAGCTTTTTGCACATGCGAGTGCCTACAAAGGGACTAGATGTCTCATGAT
GCCCCTCCCTCTTTCCCCCCACCATCACGCTGCACAAAAGGTTTTGATTG
GGCCAAGACCAGCAGCCGTACTCTGAGTGGATATCGGCTACACTGGGACT
CCTCACGACGCTCCATCCCAAGCAAAGCCATGTCATCACCCTCGTCGCAT
TCGTGCGCCGCCTCTCCGCCGCCGGACGTGGCAGTCTACTCCTTCCTGTC
TGCTTATGACGACGACGAGAAGGAGGAGGATGATGATGATGAGGAGGAGA
AGGAAGGAGAGGAGGAGAGGGAGGATGAGGACGATCAGCAGCCTCAGGAG
CGGGGGCGACAAGAAGCGTCGGACGCCATGTCTGAATCTGGCGAGTGCTT
CCTGGACCAGTTTGACGAACACTTACCCCAGCATCACCATCCCGCCGCGG
CCGCATTGTGGGAGGAAGACTCACCATATTTCGCAGAGCGGGCGCATAAC
TCGCGGCCACGACGGCAAGCTACACTTGGGCCCGTCGGTGGTTTGTTCTG
GAGGGGAGTAGTCTCTACTATGTTAGGGAGAACGCGGGGGACATGCTGGG
GCTACGAGACGTTCAAGAATGCTCCAGCAACATCAAAGAGTTGATCAAGG
GCATGAAAGACCTCTGCAAGGCATCCACCACCATGAGCAACGCCTCCAAA
TCCCTGGCCAAGAGTAATAAAGAAGTCGCCACGAAAATAGCCAGCCTCGG
GGGAATAGAAGTTGTCCCTCTCCTCCACCGCTTCGCTAACACCCTGGATG
AAATGGCCACCGCACACGACATGCTTGTGCACTCCCTCACTCAATCCTTC
GTCGTCCCTCTGCAAACGTTCTGCAGAAACGAAGCAGACAAGGCCAGCGA
CTACGAAAAAAGCTACCACTACGAAAAACATGCATTCACCGATTCCCTTG
GCAAGTTGCTTCGAGGACCCCTCAGACCCAGTAGCAAGACCCCTCCGGCC
GTTGCACTCACGAACCGGGCACAGGACGTGGGGCTGAGACGGCGAGGCAT
GGAGCAAGCACGACACCGACTTGCCCGTACAGTGGATTCGCTGGACGTGA
GACGAACGTTGGAGTTGACGGAGGGAGTAGTTGCGGTCCTATTTGCATTT
CAGGCACATCATTCGATGTTGGTGGATTCCATGTCGACGCTCGGCCCCTC
CCTAGAGGAGCTGAGGGCGTCTCAGAGCAAAGCCAGGGATGGTCTCAAGG
TGGGAGACGAGCAATGGGAACGACGGGCCGAGATGTTGGACATGCTGCTG
CCAACAGAGGTGGCTGAACGGAGCGTGGACACGTGCGATGAAGCGCGATT
CGCCCACCTCTCGACGGTGGAAGCTGCTGCGGTTAGCCCTCTTTCTACCT
CTTTGCTTGATCTGGTTGACCGGAGATTTGGAGTGTTGGAGATTCAGGAG
AGTCTTAGAAGGACTTTATTCCAGCCACGAGCGGCGCCGGGAGTGCACCA
CGAGAGCTTTTTGCACATGCGAGTGCCTACAAAGGGACTAGATGTCTCAT
GATGCCCCTCCCTCTTTCCCCCCACCATCACGCTGCACAAAAGGTTTTGA
TTGGGCCAAGACCAGCAGCCGTACTCTGAGTGGATATCGGCTACACTGGG
ACTCCTCACGACGCTCCATCCCAAGCAAAGCCATGTCATCACCCTCGTCG
CATTCGTGCGCCGCCTCTCCGCCGCCGGACGTGGCAGTCTACTCCTTCCT
GTCTGCTTATGACGACGACGAGAAGGAGGAGGATGATGATGATGAGGAGG
AGAAGGAAGGAGAGGAGGAGAGGGAGGATGAGGACGATCAGCAGCCTCAG
GAGCGGGGGCGACAAGAAGCGTCGGACGCCATGTCTGAATCTGGCGAGTG
CTTCCTGGACCAGTTTGACGAACACTTACCCCAGCATCACCATCCCGCCG
CGGCCGCATTGTGGGAGGAAGACTCACCATATTTCGCAGAGCGGGCGCAT
AACTCGCGGCCACGACGGCAAGCTACACTTGGGCCCGTCGGTGGTTTGTT
CTGGAGGGGAGTAGTCTCTACTATGTTAGGGAGAACGCGGGGGACATGCT
GGGGCTACGAGACGTTCAAGAATGCTCCAGCAACATCAAAGAGTTGATCA
AGGGCATGAAAGACCTCTGCAAGGCATCCACCACCATGAGCAACGCCTCC
AAATCCCTGGCCAAGAGTAATAAAGAAGTCGCCACGAAAATAGCCAGCCT
CGGGGGAATAGAAGTTGTCCCTCTCCTCCACCGCTTCGCTAACACCCTGG
ATGAAATGGCCACCGCACACGACATGCTTGTGCACTCCCTCACTCAATCC
TTCGTCGTCCCTCTGCAAACGTTCTGCAGAAACGAAGCAGACAAGGCCAG
CGACTACGAAAAAAGCTACCACTACGAAAAACATGCATTCACCGATTCCC
TTGGCAAGTTGCTTCGAGGACCCCTCAGACCCAGTAGCAAGACCCCTCCG
GCCGTTGCACTCACGAACCGGGCACAGGACGTGGGGCTGAGACGGCGAGG
CATGGAGCAAGCACGACACCGACTTGCCCGTACAGTGGATTCGCTGGACG
TGAGACGAACGTTGGAGTTGACGGAGGGAGTAGTTGCGGTCCTATTTGCA
TTTCAGGCACATCATTCGATGTTGGTGGATTCCATGTCGACGCTCGGCCC
CTCCCTAGAGGAGCTGAGGGCGTCTCAGAGCAAAGCCAGGGATGGTCTCA
AGGTGGGAGACGAGCAATGGGAACGACGGGCCGAGATGTTGGACATGCTG
CTGCCAACAGAGGTGGCTGAACGGAGCGTGGACACGTGCGATGAAGCGCG
ATTCGCCCACCTCTCGACGGTGGAAGCTGCTGCGGTTAGCCCTCTTTCTA
CCTCTTTGCTTGATCTGGTTGACCGGAGATTTGGAGTGTTGGAGATTCAG
GAGAGTCTTAGAAGGACTTTATTCCAGCCACGAGCGGCGCCGGGAGTGCA
CCACGAGAGCTTTTTGCACATGCGAGTGCCTACAAAGGGACTAGATGTCT
CATGATGCCCCTCCCTCTTTCCCCCCACCATCACGCTGCACAAAAGGTTT
TGATTGGGCCAAGACCAGCAGCCGTACTCTGAGTGGATATCGGCTACACT
GGGACTCCTCACGACGCTCCATCCCAAGCAAAGCCATGTCATCACCCTCG
TCGCATTCGTGCGCCGCCTCTCCGCCGCCGGACGTGGCAGTCTACTCCTT
CCTGTCTGCTTATGACGACGACGAGAAGGAGGAGGATGATGATGATGAGG
AGGAGAAGGAAGGAGAGGAGGAGAGGGAGGATGAGGACGATCAGCAGCCT
CAGGAGCGGGGGCGACAAGAAGCGTCGGACGCCATGTCTGAATCTGGCGA
GTGCTTCCTGGACCAGTTTGACGAACACTTACCCCAGCATCACCATCCCG
CCGCGGCCGCATTGTGGGAGGAAGACTCACCATATTTCGCAGAGCGGGCG
CATAACTCG back to top
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