jgi.p|Nanoce1779_2|591692, mRNA_5191 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591692
Unique NamemRNA_5191
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length941
Alignment locationscaffold_12:700573..701513 +

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Properties
Property NameValue
TranscriptId591778
TrackFilteredModels2
ProteinId591692
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:700573..701513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591692gene_5191Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591692mRNA_5191-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5191CDS_5191Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5191 ID=mRNA_5191|Name=jgi.p|Nanoce1779_2|591692|organism=Nannochloropsis oceanica|type=mRNA|length=941bp
ACAGCCGTCCGTCTTTCCATCTATTTTATCTGAAATGGCTCGCCTTTCGC
TTGTTGCCTGTGGCGTAGTTGTCATGGCCACGGTCACTCACGGCTTTGTT
GTCCCGGCTCCCCGCACTTACTCCCGCGGCCGCATCGCCATGGCTGCCAA
GAAGGACTTCTGGATTGCGCCCTCCATCCTCTCTGCTGACTTTGCCAAGC
TTGGGCAAGAAGTGGACAACGTCCTGGCCGCTGGTGCTGACATCGTGCAC
TTCGATGTGATGGACAACCACTACGTCCCCAACTTGACGATCGGCCCCAT
GGTCTGCAAGGCCCTGCGCGACCACGGCGTCACCGCCCCCATTGACGTGC
ACTTGATGGTTTCCCCCGTTGACCGTATCATCCCTGATTTTGCTGATGCC
GGCGCTTCCTTCATCACCTTCCACCCGGAAGCTACCAACCACATTGACCG
AACCCTGCAACTTATCAAGAGCAAAGGGTGCAAGGCTGGCTTGGTCTTCA
ACCCCGCTACCCCCCTCACCATGGCCAAGCACGTCCTGGACAAAATCGAC
ATCATTCTTCTCATGTCTGTGAACCCCGGTTTTGGTGGGCAATCCTTCAT
TCCCGAGACCCTGGTCAAGCTGCGTGAGGCCCGTAAAATGATCGACGAGT
CCGGGTATGATATCCGCCTGGAGGTCGATGGTGGGGTTGGCGTGGCCAAC
ATCAAGGAGATTGCCGAAGCAGGCGCTGATTTCTTTGTGGCGGGGAGTGC
TATCTTGAAGAACCCCCGCACCCAGGATGCCTACAAGGGGACGATTGACC
AGATGCGTGCCGAGCTGGCGAAGGTGAGCAAGTAGAGGGAAGGGTAGGCT
TTACGGATATGTATCACCAGAAACGGTAGGACGAAAGGGTATAAGATAAA
TGAATGAATAATTTGATTTTTGTGCGTTTGCGTGGGTGGGG
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protein sequence of jgi.p|Nanoce1779_2|591692

>mRNA_5191-protein ID=mRNA_5191-protein|Name=jgi.p|Nanoce1779_2|591692|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MARLSLVACGVVVMATVTHGFVVPAPRTYSRGRIAMAAKKDFWIAPSILS
ADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVT
APIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCK
AGLVFNPATPLTMAKHVLDKIDIILLMSVNPGFGGQSFIPETLVKLREAR
KMIDESGYDIRLEVDGGVGVANIKEIAEAGADFFVAGSAILKNPRTQDAY
KGTIDQMRAELAKVSK*
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mRNA from alignment at scaffold_12:700573..701513+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5191 ID=mRNA_5191|Name=jgi.p|Nanoce1779_2|591692|organism=Nannochloropsis oceanica|type=mRNA|length=941bp|location=Sequence derived from alignment at scaffold_12:700573..701513+ (Nannochloropsis oceanica)
ACAGCCGTCCGTCTTTCCATCTATTTTATCTGAAATGGCTCGCCTTTCGC
TTGTTGCCTGTGGCGTAGTTGTCATGGCCACGGTCACTCACGGCTTTGTT
GTCCCGGCTCCCCGCACTTACTCCCGCGGCCGCATCGCCATGGCTGCCAA
GAAGGACTTCTGGATTGCGCCCTCCATCCTCTCTGCTGACTTTGCCAAGC
TTGGGCAAGAAGTGGACAACGTCCTGGCCGCTGGTGCTGACATCGTGCAC
TTCGATGTGATGGACAACCACTACGTCCCCAACTTGACGATCGGCCCCAT
GGTCTGCAAGGCCCTGCGCGACCACGGCGTCACCGCCCCCATTGACGTGC
ACTTGATGGTTTCCCCCGTTGACCGTATCATCCCTGATTTTGCTGATGCC
GGCGCTTCCTTCATCACCTTCCACCCGGAAGCTACCAACCACATTGACCG
AACCCTGCAACTTATCAAGAGCAAAGGGTGCAAGGCTGGCTTGGTCTTCA
ACCCCGCTACCCCCCTCACCATGGCCAAGCACGTCCTGGACAAAATCGAC
ATCATTCTTCTCATGTCTGTGAACCCCGGTTTTGGTGGGCAATCCTTCAT
TCCCGAGACCCTGGTCAAGCTGCGTGAGGCCCGTAAAATGATCGACGAGT
CCGGGTATGATATCCGCCTGGAGGTCGATGGTGGGGTTGGCGTGGCCAAC
ATCAAGGAGATTGCCGAAGCAGGCGCTGATTTCTTTGTGGCGGGGAGTGC
TATCTTGAAGAACCCCCGCACCCAGGATGCCTACAAGGGGACGATTGACC
AGATGCGTGCCGAGCTGGCGAAGGTGAGCAAGTAGAGGGAAGGGTAGGCT
TTACGGATATGTATCACCAGAAACGGTAGGACGAAAGGGTATAAGATAAA
TGAATGAATAATTTGATTTTTGTGCGTTTGCGTGGGTGGGG
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Coding sequence (CDS) from alignment at scaffold_12:700573..701513+

>mRNA_5191 ID=mRNA_5191|Name=jgi.p|Nanoce1779_2|591692|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at scaffold_12:700573..701513+ (Nannochloropsis oceanica)
ATGGCTCGCCTTTCGCTTGTTGCCTGTGGCGTAGTTGTCATGGCCACGGT
CACTCACGGCTTTGTTGTCCCGGCTCCCCGCACTTACTCCCGCGGCCGCA
TCGCCATGGCTGCCAAGAAGGACTTCTGGATTGCGCCCTCCATCCTCTCT
GCTGACTTTGCCAAGCTTGGGCAAGAAGTGGACAACGTCCTGGCCGCTGG
TGCTGACATCGTGCACTTCGATGTGATGGACAACCACTACGTCCCCAACT
TGACGATCGGCCCCATGGTCTGCAAGGCCCTGCGCGACCACGGCGTCACC
GCCCCCATTGACGTGCACTTGATGGTTTCCCCCGTTGACCGTATCATCCC
TGATTTTGCTGATGCCGGCGCTTCCTTCATCACCTTCCACCCGGAAGCTA
CCAACCACATTGACCGAACCCTGCAACTTATCAAGAGCAAAGGGTGCAAG
GCTGGCTTGGTCTTCAACCCCGCTACCCCCCTCACCATGGCCAAGCACGT
CCTGGACAAAATCGACATCATTCTTCTCATGTCTGTGAACCCCGGTTTTG
GTGGGCAATCCTTCATTCCCGAGACCCTGGTCAAGCTGCGTGAGGCCCGT
AAAATGATCGACGAGTCCGGGTATGATATCCGCCTGGAGGTCGATGGTGG
GGTTGGCGTGGCCAACATCAAGGAGATTGCCGAAGCAGGCGCTGATTTCT
TTGTGGCGGGGAGTGCTATCTTGAAGAACCCCCGCACCCAGGATGCCTAC
AAGGGGACGATTGACCAGATGCGTGCCGAGCTGGCGAAGGTGAGCAAGTA
G
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Synonyms
Publications