jgi.p|Nanoce1779_2|591677, mRNA_5189 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591677
Unique NamemRNA_5189
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1417
Alignment locationscaffold_12:689978..691775 -

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Properties
Property NameValue
TranscriptId591763
TrackFilteredModels2
ProteinId591677
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:689978..691775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591677gene_5189Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591677mRNA_5189-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5189CDS_5189Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5189 ID=mRNA_5189|Name=jgi.p|Nanoce1779_2|591677|organism=Nannochloropsis oceanica|type=mRNA|length=1417bp
ACAGACAACGCAACTATGGTCCGCTCCCACACCAAATCGGAGCAGAAGGC
CCTGCCTCCGCCCCTGAGCCTGCTGGGCTGCTCGACTGCCGCGCACTCCA
TTAATCTCCATAAAGCACTGACGTTTCCAGTGGTATTGGGCTTCATGTAC
TACTTCAACAACTTCACTCAACCCGCGCTGCTGTACCTGATGCTCCACTC
TGTCTACTGCTGGTGCTGGCTCACCAAGCACATGACTTTCCGAGACAAGA
ACTTCGACGAGAAGATGTCCTTTCCCTTTTTCCTGGTCGTCTTCCTCTAC
GTAGACCTGTACTGGGTTGGCCCCTACCTTCTCTGCAAATATCGTCGTGA
TCCCTTTCTCGCTGATTGGGAGCTGTGCGCCTGCATCCTGCTGTGGGGAT
ACGGCGTCTTTCTGCATTTCGCTTCCGACAGTCAGAAGGCGCACACATTG
ACCTATCGCGGCCGAGGACTCATTACCTCGGGGTTGTTCTCGTGGGTCCG
AAACCCGAACTACTTGGGCGAGACGTTGATTTATTGCGCGTATGCCTTGT
TATGCCAGAGTAAGGTGGCGTGGGGGATTCTGGCGTCGTTCGTTTTGATT
ACGTTTGTGCCGAATATGATCAAGAAGGATAAGAGCCTAGCGAAGTACGA
GGAATTCGAGGAATATAAGAAGAAGACGTGGGTGATGGTACCTTTCATTT
ACTAGCTGGGACAGGGTGGGAAGCAGAGAGGGCAGACGGGAGGCGGGGTA
TGCGCATGGGAAAGGAAGAGAGGGGGAAGGGTGGGAGATCAGGAGTGTGC
GTGAGAGAGGAGAAGTGTGTATCGGAGAGGAGAGTATCGAAAAAAGAAGT
CAGCGAGGAGGGACGAAAATTTGCCATCTCAGGGTAGTTGTTCTGGTGTA
GCGTTTGTTTTCCAATATTCTTTTCTTCTCTATCCCCTTCCTTTTTACAG
CGCAAAGACAGCGGCGACGACCGAGTAACTCAGTCACTGGTCGATCCACT
CACGACGTTTGGAGGTCCGTGTGGGCAGGCTTTTTGATCGCTCTTGTGCA
TATGCTAACCCTCCTCCTTCCTGTTTCTTCACTTCTTTCCTCACTGCGTC
CCTGAATGCCTTCCTACCACACACACGCACGACTTTTCTCCCCACCGTTG
CTTTACTTGTCCTTCTTCTTGTCCTTTTTCTTCTTCTTCGGGCTTTCCTC
GTCTTCCTCGTCCTCCACCACCGACTCTTTCTTGCTCTTCTTCTTACTTT
TTTTCGACGGTGTCTCCGCCTCTTCCGCTGCCGCTCCATTCGGAGCAACT
GCTGCTTCCTCCTCGTCGTCCGACTCCCTCTTTCTCTTTTCCTTCTTCTC
CTTCTTCTTTTTCTTCTTCTCTGCACTTCCTCCATCTGTGGTTATCCCCA
CCATGTCACTCGCCGCG
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protein sequence of jgi.p|Nanoce1779_2|591677

>mRNA_5189-protein ID=mRNA_5189-protein|Name=jgi.p|Nanoce1779_2|591677|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MVRSHTKSEQKALPPPLSLLGCSTAAHSINLHKALTFPVVLGFMYYFNNF
TQPALLYLMLHSVYCWCWLTKHMTFRDKNFDEKMSFPFFLVVFLYVDLYW
VGPYLLCKYRRDPFLADWELCACILLWGYGVFLHFASDSQKAHTLTYRGR
GLITSGLFSWVRNPNYLGETLIYCAYALLCQSKVAWGILASFVLITFVPN
MIKKDKSLAKYEEFEEYKKKTWVMVPFIY*
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mRNA from alignment at scaffold_12:689978..691775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5189 ID=mRNA_5189|Name=jgi.p|Nanoce1779_2|591677|organism=Nannochloropsis oceanica|type=mRNA|length=1798bp|location=Sequence derived from alignment at scaffold_12:689978..691775- (Nannochloropsis oceanica)
ACAGACAACGCAACTATGGTCCGCTCCCACACCAAATCGGAGCAGAAGGC
CCTGCCTCCGCCCCTGAGCCTGCTGGGCTGCTCGACTGCCGCGCACTCCA
TTAATCTCCATAAAGCACTGACGGTGAGTGAAAAGTGGAAAGGGAGGATG
GGAGTGGGGAGTGGGGAGGATAGGAAGGTTCATCTAAGTTTCGGCAGCGC
GACGGAATAAAATATCCGAGCGTCGATCTTACTCTCTTTTGCTCTCTTCA
TGCGGCTCGTCCATTTCCTGTCGTGGACTTTGTATGCTTCTTAGTACTTC
CACCGCGACACCTTCCTCATCTTTCTCTTCTTCTCATCCCCTCCAACTTC
TTTTGCCCACGACAGTTTCCAGTGGTATTGGGCTTCATGTACTACTTCAA
CAACTTCACTCAACCCGCGCTGCTGTACCTGATGCTCCACTCTGTCTACT
GCTGGTGCTGGCTCACCAAGGTAAGGCTAAAGGGTCGATGTGTGTGTCCT
GACTGCGCTGCTTGCATAATGGTCGAGAAAGGTGAAAGCTGCCTTTCATT
CTTGTCATAAAGAAGACGAAATATAGTCATATGCCCTTCTTTACCTCTTT
ATAACAAAGCACATGACTTTCCGAGACAAGAACTTCGACGAGAAGATGTC
CTTTCCCTTTTTCCTGGTCGTCTTCCTCTACGTAGACCTGTACTGGGTTG
GCCCCTACCTTCTCTGCAAATATCGTCGTGATCCCTTTCTCGCTGATTGG
GAGCTGTGCGCCTGCATCCTGCTGTGGGGATACGGCGTCTTTCTGCATTT
CGCTTCCGACAGTCAGAAGGCGCACACATTGACCTATCGCGGCCGAGGAC
TCATTACCTCGGGGTTGTTCTCGTGGGTCCGAAACCCGAACTACTTGGGC
GAGACGTTGATTTATTGCGCGTATGCCTTGTTATGCCAGAGTAAGGTGGC
GTGGGGGATTCTGGCGTCGTTCGTTTTGATTACGTTTGTGCCGAATATGA
TCAAGAAGGATAAGAGCCTAGCGAAGTACGAGGAATTCGAGGAATATAAG
AAGAAGACGTGGGTGATGGTACCTTTCATTTACTAGCTGGGACAGGGTGG
GAAGCAGAGAGGGCAGACGGGAGGCGGGGTATGCGCATGGGAAAGGAAGA
GAGGGGGAAGGGTGGGAGATCAGGAGTGTGCGTGAGAGAGGAGAAGTGTG
TATCGGAGAGGAGAGTATCGAAAAAAGAAGTCAGCGAGGAGGGACGAAAA
TTTGCCATCTCAGGGTAGTTGTTCTGGTGTAGCGTTTGTTTTCCAATATT
CTTTTCTTCTCTATCCCCTTCCTTTTTACAGCGCAAAGACAGCGGCGACG
ACCGAGTAACTCAGTCACTGGTCGATCCACTCACGACGTTTGGAGGTCCG
TGTGGGCAGGCTTTTTGATCGCTCTTGTGCATATGCTAACCCTCCTCCTT
CCTGTTTCTTCACTTCTTTCCTCACTGCGTCCCTGAATGCCTTCCTACCA
CACACACGCACGACTTTTCTCCCCACCGTTGCTTTACTTGTCCTTCTTCT
TGTCCTTTTTCTTCTTCTTCGGGCTTTCCTCGTCTTCCTCGTCCTCCACC
ACCGACTCTTTCTTGCTCTTCTTCTTACTTTTTTTCGACGGTGTCTCCGC
CTCTTCCGCTGCCGCTCCATTCGGAGCAACTGCTGCTTCCTCCTCGTCGT
CCGACTCCCTCTTTCTCTTTTCCTTCTTCTCCTTCTTCTTTTTCTTCTTC
TCTGCACTTCCTCCATCTGTGGTTATCCCCACCATGTCACTCGCCGCG
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Coding sequence (CDS) from alignment at scaffold_12:689978..691775-

>mRNA_5189 ID=mRNA_5189|Name=jgi.p|Nanoce1779_2|591677|organism=Nannochloropsis oceanica|type=CDS|length=2070bp|location=Sequence derived from alignment at scaffold_12:689978..691775- (Nannochloropsis oceanica)
CACATGACTTTCCGAGACAAGAACTTCGACGAGAAGATGTCCTTTCCCTT
TTTCCTGGTCGTCTTCCTCTACGTAGACCTGTACTGGGTTGGCCCCTACC
TTCTCTGCAAATATCGTCGTGATCCCTTTCTCGCTGATTGGGAGCTGTGC
GCCTGCATCCTGCTGTGGGGATACGGCGTCTTTCTGCATTTCGCTTCCGA
CAGTCAGAAGGCGCACACATTGACCTATCGCGGCCGAGGACTCATTACCT
CGGGGTTGTTCTCGTGGGTCCGAAACCCGAACTACTTGGGCGAGACGTTG
ATTTATTGCGCGTATGCCTTGTTATGCCAGAGTAAGGTGGCGTGGGGGAT
TCTGGCGTCGTTCGTTTTGATTACGTTTGTGCCGAATATGATCAAGAAGG
ATAAGAGCCTAGCGAAGTACGAGGAATTCGAGGAATATAAGAAGAAGACG
TGGGTGATGGTACCTTTCATTTACTAGTTTCCAGTGGTATTGGGCTTCAT
GTACTACTTCAACAACTTCACTCAACCCGCGCTGCTGTACCTGATGCTCC
ACTCTGTCTACTGCTGGTGCTGGCTCACCAAGATGGTCCGCTCCCACACC
AAATCGGAGCAGAAGGCCCTGCCTCCGCCCCTGAGCCTGCTGGGCTGCTC
GACTGCCGCGCACTCCATTAATCTCCATAAAGCACTGACGCACATGACTT
TCCGAGACAAGAACTTCGACGAGAAGATGTCCTTTCCCTTTTTCCTGGTC
GTCTTCCTCTACGTAGACCTGTACTGGGTTGGCCCCTACCTTCTCTGCAA
ATATCGTCGTGATCCCTTTCTCGCTGATTGGGAGCTGTGCGCCTGCATCC
TGCTGTGGGGATACGGCGTCTTTCTGCATTTCGCTTCCGACAGTCAGAAG
GCGCACACATTGACCTATCGCGGCCGAGGACTCATTACCTCGGGGTTGTT
CTCGTGGGTCCGAAACCCGAACTACTTGGGCGAGACGTTGATTTATTGCG
CGTATGCCTTGTTATGCCAGAGTAAGGTGGCGTGGGGGATTCTGGCGTCG
TTCGTTTTGATTACGTTTGTGCCGAATATGATCAAGAAGGATAAGAGCCT
AGCGAAGTACGAGGAATTCGAGGAATATAAGAAGAAGACGTGGGTGATGG
TACCTTTCATTTACTAGTTTCCAGTGGTATTGGGCTTCATGTACTACTTC
AACAACTTCACTCAACCCGCGCTGCTGTACCTGATGCTCCACTCTGTCTA
CTGCTGGTGCTGGCTCACCAAGATGGTCCGCTCCCACACCAAATCGGAGC
AGAAGGCCCTGCCTCCGCCCCTGAGCCTGCTGGGCTGCTCGACTGCCGCG
CACTCCATTAATCTCCATAAAGCACTGACGCACATGACTTTCCGAGACAA
GAACTTCGACGAGAAGATGTCCTTTCCCTTTTTCCTGGTCGTCTTCCTCT
ACGTAGACCTGTACTGGGTTGGCCCCTACCTTCTCTGCAAATATCGTCGT
GATCCCTTTCTCGCTGATTGGGAGCTGTGCGCCTGCATCCTGCTGTGGGG
ATACGGCGTCTTTCTGCATTTCGCTTCCGACAGTCAGAAGGCGCACACAT
TGACCTATCGCGGCCGAGGACTCATTACCTCGGGGTTGTTCTCGTGGGTC
CGAAACCCGAACTACTTGGGCGAGACGTTGATTTATTGCGCGTATGCCTT
GTTATGCCAGAGTAAGGTGGCGTGGGGGATTCTGGCGTCGTTCGTTTTGA
TTACGTTTGTGCCGAATATGATCAAGAAGGATAAGAGCCTAGCGAAGTAC
GAGGAATTCGAGGAATATAAGAAGAAGACGTGGGTGATGGTACCTTTCAT
TTACTAGTTTCCAGTGGTATTGGGCTTCATGTACTACTTCAACAACTTCA
CTCAACCCGCGCTGCTGTACCTGATGCTCCACTCTGTCTACTGCTGGTGC
TGGCTCACCAAGATGGTCCGCTCCCACACCAAATCGGAGCAGAAGGCCCT
GCCTCCGCCCCTGAGCCTGCTGGGCTGCTCGACTGCCGCGCACTCCATTA
ATCTCCATAAAGCACTGACG
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Synonyms
Publications