jgi.p|Nanoce1779_2|591669, mRNA_5186 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591669
Unique NamemRNA_5186
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1531
Alignment locationscaffold_12:681759..683289 +

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Properties
Property NameValue
TranscriptId591755
TrackFilteredModels2
ProteinId591669
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:681759..683289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591669gene_5186Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591669mRNA_5186-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5186CDS_5186Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5186 ID=mRNA_5186|Name=jgi.p|Nanoce1779_2|591669|organism=Nannochloropsis oceanica|type=mRNA|length=1531bp
GACGTTTCTTAGCGGGCGAGCACCCACGCAGCAACGACGATCTAATCTCA
AACCCACAGCCTGACAATTACAGCGCATGGGACGCTGGGTCCGGGTTCTC
GTCCACGTGCTCCTCTTCCTCATAGTCGTTGCAATCCCTGTGTCTGGCTT
TGTCGTAGGTCTGCACCAGTCAACGAGGTGAGTCTATCATGATCGTTATC
GCATTCCCTCAGCCTCCCAGCCTTTTCATAATATATATGGTGTCTCAACG
AAGAGAAGTGATATAAAATAAGGACGTCAGAGCTCTTCTCTTTATGGCGC
GATCGCATGTCTTTTTATTTACGCACATCTTGATCCCAAGGTCTAGTGGC
AGGAGGTTGAATTGGATGCGTCTGTAAACCCGGAAAAGCCAACGTAATTT
AGTAAGACGCGTCAAGTCAAGTCGTGTAGTGCACCAGCATGCTGCGAAGA
ATGTTGTTCGTCATACCCTGAGCTTGTCTCTCCATAATGTTCTTCACCAA
ACACACAGACCTTTCCCATCGTTGCCCGCACGCGTTGTATATAGTAAACC
CCACGCCATCGTCATGGGCAACCTCTTCTCCCTCATATCCGGGCCATCTC
TCGATACATTCCTTAACGGCAAAGTAATCTGGATCACTGGTGCTTCTAGT
GGCTTGGGAAGAGCCTTGGCAATCGAAGCCGCTCGTCGGGGCGCCCGCGT
TGTTCTTAGCGCGCGTCGCGTCGACAAGCTGGAGGACGTCAAGAAACAAT
GCCTTGCTGTCGCAGTACCCCCATTATCCTCACCTTCATCTTCCACCACG
ACTTCCAAGCGTGTGCTTGTCCAACCCCTCGACATGGCTCGGTACGACGA
CCCGAGCTTTGCAGCCGCCGTCGCCCACGTTAGCGCCATCATGGGCGGAC
TCGATATCTTAATCAACAACGCAGGGGTGTCTACCCGCAGCAGTGCCGCA
GACACCTCCCTCTCTGTCGACCTTTCTGTCATGGCAAGCAATTTCTTCGG
CCCAGTGGCACTTACCAAACTTTCCCTTCCCCTCCTCCGTCAAAGCCCCT
CCCATGCCCCCCATCTCATCGTCGTCAACAGCGTGCAAGGGAAATTCGGA
TTAGGCCTCCGCACGTCCTACTCGGCGTCCAAGCATGCCTTGACCGGCTA
CTTCGACTCCCTCCGCGCAGAACTATCCGCTGAGGCCATCCCCGTTACGG
CTATTTTCCCCGGCTACATAAAAACGGATCTATCATTGAATGCTTTGACA
GGGCAAGGAGAAAAACACGGACAAATGGACGAAACCACCGCGAAAGGGCT
TGACCCTTCCGACTTGGCCTTGAAGATTTTCAAGGCAGCAGCCGCGGGGA
AAAAGGAGGCGGTGTATGCGCCAGTCGATGCCAGGGTGGCGATCTGGATG
AGAAATGTAATGCCGGATTTGGTATTCAGCATATTAGGGAGTAAAGCCCG
GAAGGCTCTGGGGGTGGGAAAGATAGAGGGGAAGAAGGAGGATTGATTGA
TTGAAAACTAGAAAACAACAAGAGTTGCTTA
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protein sequence of jgi.p|Nanoce1779_2|591669

>mRNA_5186-protein ID=mRNA_5186-protein|Name=jgi.p|Nanoce1779_2|591669|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MGNLFSLISGPSLDTFLNGKVIWITGASSGLGRALAIEAARRGARVVLSA
RRVDKLEDVKKQCLAVAVPPLSSPSSSTTTSKRVLVQPLDMARYDDPSFA
AAVAHVSAIMGGLDILINNAGVSTRSSAADTSLSVDLSVMASNFFGPVAL
TKLSLPLLRQSPSHAPHLIVVNSVQGKFGLGLRTSYSASKHALTGYFDSL
RAELSAEAIPVTAIFPGYIKTDLSLNALTGQGEKHGQMDETTAKGLDPSD
LALKIFKAAAAGKKEAVYAPVDARVAIWMRNVMPDLVFSILGSKARKALG
VGKIEGKKED*
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mRNA from alignment at scaffold_12:681759..683289+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5186 ID=mRNA_5186|Name=jgi.p|Nanoce1779_2|591669|organism=Nannochloropsis oceanica|type=mRNA|length=1531bp|location=Sequence derived from alignment at scaffold_12:681759..683289+ (Nannochloropsis oceanica)
GACGTTTCTTAGCGGGCGAGCACCCACGCAGCAACGACGATCTAATCTCA
AACCCACAGCCTGACAATTACAGCGCATGGGACGCTGGGTCCGGGTTCTC
GTCCACGTGCTCCTCTTCCTCATAGTCGTTGCAATCCCTGTGTCTGGCTT
TGTCGTAGGTCTGCACCAGTCAACGAGGTGAGTCTATCATGATCGTTATC
GCATTCCCTCAGCCTCCCAGCCTTTTCATAATATATATGGTGTCTCAACG
AAGAGAAGTGATATAAAATAAGGACGTCAGAGCTCTTCTCTTTATGGCGC
GATCGCATGTCTTTTTATTTACGCACATCTTGATCCCAAGGTCTAGTGGC
AGGAGGTTGAATTGGATGCGTCTGTAAACCCGGAAAAGCCAACGTAATTT
AGTAAGACGCGTCAAGTCAAGTCGTGTAGTGCACCAGCATGCTGCGAAGA
ATGTTGTTCGTCATACCCTGAGCTTGTCTCTCCATAATGTTCTTCACCAA
ACACACAGACCTTTCCCATCGTTGCCCGCACGCGTTGTATATAGTAAACC
CCACGCCATCGTCATGGGCAACCTCTTCTCCCTCATATCCGGGCCATCTC
TCGATACATTCCTTAACGGCAAAGTAATCTGGATCACTGGTGCTTCTAGT
GGCTTGGGAAGAGCCTTGGCAATCGAAGCCGCTCGTCGGGGCGCCCGCGT
TGTTCTTAGCGCGCGTCGCGTCGACAAGCTGGAGGACGTCAAGAAACAAT
GCCTTGCTGTCGCAGTACCCCCATTATCCTCACCTTCATCTTCCACCACG
ACTTCCAAGCGTGTGCTTGTCCAACCCCTCGACATGGCTCGGTACGACGA
CCCGAGCTTTGCAGCCGCCGTCGCCCACGTTAGCGCCATCATGGGCGGAC
TCGATATCTTAATCAACAACGCAGGGGTGTCTACCCGCAGCAGTGCCGCA
GACACCTCCCTCTCTGTCGACCTTTCTGTCATGGCAAGCAATTTCTTCGG
CCCAGTGGCACTTACCAAACTTTCCCTTCCCCTCCTCCGTCAAAGCCCCT
CCCATGCCCCCCATCTCATCGTCGTCAACAGCGTGCAAGGGAAATTCGGA
TTAGGCCTCCGCACGTCCTACTCGGCGTCCAAGCATGCCTTGACCGGCTA
CTTCGACTCCCTCCGCGCAGAACTATCCGCTGAGGCCATCCCCGTTACGG
CTATTTTCCCCGGCTACATAAAAACGGATCTATCATTGAATGCTTTGACA
GGGCAAGGAGAAAAACACGGACAAATGGACGAAACCACCGCGAAAGGGCT
TGACCCTTCCGACTTGGCCTTGAAGATTTTCAAGGCAGCAGCCGCGGGGA
AAAAGGAGGCGGTGTATGCGCCAGTCGATGCCAGGGTGGCGATCTGGATG
AGAAATGTAATGCCGGATTTGGTATTCAGCATATTAGGGAGTAAAGCCCG
GAAGGCTCTGGGGGTGGGAAAGATAGAGGGGAAGAAGGAGGATTGATTGA
TTGAAAACTAGAAAACAACAAGAGTTGCTTA
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Coding sequence (CDS) from alignment at scaffold_12:681759..683289+

>mRNA_5186 ID=mRNA_5186|Name=jgi.p|Nanoce1779_2|591669|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at scaffold_12:681759..683289+ (Nannochloropsis oceanica)
ATGGGCAACCTCTTCTCCCTCATATCCGGGCCATCTCTCGATACATTCCT
TAACGGCAAAGTAATCTGGATCACTGGTGCTTCTAGTGGCTTGGGAAGAG
CCTTGGCAATCGAAGCCGCTCGTCGGGGCGCCCGCGTTGTTCTTAGCGCG
CGTCGCGTCGACAAGCTGGAGGACGTCAAGAAACAATGCCTTGCTGTCGC
AGTACCCCCATTATCCTCACCTTCATCTTCCACCACGACTTCCAAGCGTG
TGCTTGTCCAACCCCTCGACATGGCTCGGTACGACGACCCGAGCTTTGCA
GCCGCCGTCGCCCACGTTAGCGCCATCATGGGCGGACTCGATATCTTAAT
CAACAACGCAGGGGTGTCTACCCGCAGCAGTGCCGCAGACACCTCCCTCT
CTGTCGACCTTTCTGTCATGGCAAGCAATTTCTTCGGCCCAGTGGCACTT
ACCAAACTTTCCCTTCCCCTCCTCCGTCAAAGCCCCTCCCATGCCCCCCA
TCTCATCGTCGTCAACAGCGTGCAAGGGAAATTCGGATTAGGCCTCCGCA
CGTCCTACTCGGCGTCCAAGCATGCCTTGACCGGCTACTTCGACTCCCTC
CGCGCAGAACTATCCGCTGAGGCCATCCCCGTTACGGCTATTTTCCCCGG
CTACATAAAAACGGATCTATCATTGAATGCTTTGACAGGGCAAGGAGAAA
AACACGGACAAATGGACGAAACCACCGCGAAAGGGCTTGACCCTTCCGAC
TTGGCCTTGAAGATTTTCAAGGCAGCAGCCGCGGGGAAAAAGGAGGCGGT
GTATGCGCCAGTCGATGCCAGGGTGGCGATCTGGATGAGAAATGTAATGC
CGGATTTGGTATTCAGCATATTAGGGAGTAAAGCCCGGAAGGCTCTGGGG
GTGGGAAAGATAGAGGGGAAGAAGGAGGATTGA
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Synonyms
Publications