jgi.p|Nanoce1779_2|639700, mRNA_5184 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|639700
Unique NamemRNA_5184
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1401
Alignment locationscaffold_12:677820..679220 -

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Properties
Property NameValue
TranscriptId639786
TrackFilteredModels2
ProteinId639700
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:677820..679220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639700gene_5184Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5184CDS_5184Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639700mRNA_5184-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5184 ID=mRNA_5184|Name=jgi.p|Nanoce1779_2|639700|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp
ATGTGTATTGTCTTCTTTCAAGCCTTCTCAACACCAGCAACAGTAGGAGT
ATCTACGGAAAGAACAGCAACATCGACAGAAATAGCAGCATCAGCGACAG
AAACAACAGCAGCAGGCAGCCAGGACGTGCATGCCGCTATTGCAAGGAGT
TACAAGCTCATCCTCGCCTCCAATCGTGACGAATTTCTCGTGCGCCGGAC
CCGTCGACCGCGCTTCTGGGATGACACCGACGGCGTGAACAATACGAGCA
CCAAGAATGAGGAAAAAAAAGGGGTGATGGTCGCACAGATGGAAAAGCCT
CATGTTGACGCACGCACAAACAGCAATACTACCACCGCGTTGTCCTCGTC
TTTCTCTCCATTTTCGCGCGTGTGGGCCGGAAAAGATTTGTTGGCGGGAG
GGACCTGGATGGGCATTACAAGGACAGGACGCTTTGGAGTGTTGACAAAC
GTCAGAACACCCACAGAAGATCTCTTAGCTGCCGCAGCAGCAAAAGTAAC
AGCAACAGCAACAGCACCGACAACAAAAGCAACAAAATTATCGGAGACAA
GGGCAGTTAGTTCGATTCCTGTGCAGCAGGGGAAGGAAGAGGAGAAAGAC
AAGGCGAAGGAGACAAATTTCGGAAGAAAAAGTCGAGGGCACTTGGTCTT
AGATTTCCTCGCTGACCCGGATCCCAACCTCTTGCCGATGACGTACGCTC
AAAGCCTAGCGTCTCTGGCCGGAAAGGAGGGCGGGTCGAGGACACCAGCA
GCATTAAAGGCATGTGAGTTTGCAGGCTACAACCTTCTGGTGGGCAATGT
GGGACGATCTGCACAAGAAGGAGGGGAAGAAGAAGAAGTGGAAATGGCCT
ACTACTCTAACTGCCTCCTCCCGGGGCAAGCCCAAAAACTGGAAGACAAT
CGTTTATATGCGATCAGCAACCGCTTGCTTGACGTACCCTGGGAAAAGGT
ACAAAGGGGAAAGAGGCTCTTCACTGAGTGTCTGACCGAGGGGGCACTGG
CAGCAGCAGCCGTGGAAAAGGGCGGGGAAGGGAGGGAAGATGAGGATGAG
GTGCTTGCTCATTTGTTACTAGATCGATTGCTGCATGATAACGAGCCTTG
CAGCCCAGCGACGGACACAGGATACCCTCTAGAATTTGAGAAGAAGCTTG
CCCAGATTTGTATTCCGGGGGTGGCATTACGGGGGGAGGAGGAGGAGGGG
AAGGAGGGAAAGGATGGAGGGGAAAAGGGGAGGGAAAGGTCGTCGTCAGT
GTTTGGCACGACGGCAAGTATTGTAGTGTTGGTGAGAAGAGATGGGCGGA
TGTTGTTTTACGAAAGGGGTTTAGAATGGGATGAGGCGAGGGAGACTCAT
GTGGGTGTCTGGTCGAGTGTCAGAAGGACGGAGGTGAAGCTCGCTTCTTG
A
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protein sequence of jgi.p|Nanoce1779_2|639700

>mRNA_5184-protein ID=mRNA_5184-protein|Name=jgi.p|Nanoce1779_2|639700|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MCIVFFQAFSTPATVGVSTERTATSTEIAASATETTAAGSQDVHAAIARS
YKLILASNRDEFLVRRTRRPRFWDDTDGVNNTSTKNEEKKGVMVAQMEKP
HVDARTNSNTTTALSSSFSPFSRVWAGKDLLAGGTWMGITRTGRFGVLTN
VRTPTEDLLAAAAAKVTATATAPTTKATKLSETRAVSSIPVQQGKEEEKD
KAKETNFGRKSRGHLVLDFLADPDPNLLPMTYAQSLASLAGKEGGSRTPA
ALKACEFAGYNLLVGNVGRSAQEGGEEEEVEMAYYSNCLLPGQAQKLEDN
RLYAISNRLLDVPWEKVQRGKRLFTECLTEGALAAAAVEKGGEGREDEDE
VLAHLLLDRLLHDNEPCSPATDTGYPLEFEKKLAQICIPGVALRGEEEEG
KEGKDGGEKGRERSSSVFGTTASIVVLVRRDGRMLFYERGLEWDEARETH
VGVWSSVRRTEVKLAS*
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mRNA from alignment at scaffold_12:677820..679220-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5184 ID=mRNA_5184|Name=jgi.p|Nanoce1779_2|639700|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp|location=Sequence derived from alignment at scaffold_12:677820..679220- (Nannochloropsis oceanica)
ATGTGTATTGTCTTCTTTCAAGCCTTCTCAACACCAGCAACAGTAGGAGT
ATCTACGGAAAGAACAGCAACATCGACAGAAATAGCAGCATCAGCGACAG
AAACAACAGCAGCAGGCAGCCAGGACGTGCATGCCGCTATTGCAAGGAGT
TACAAGCTCATCCTCGCCTCCAATCGTGACGAATTTCTCGTGCGCCGGAC
CCGTCGACCGCGCTTCTGGGATGACACCGACGGCGTGAACAATACGAGCA
CCAAGAATGAGGAAAAAAAAGGGGTGATGGTCGCACAGATGGAAAAGCCT
CATGTTGACGCACGCACAAACAGCAATACTACCACCGCGTTGTCCTCGTC
TTTCTCTCCATTTTCGCGCGTGTGGGCCGGAAAAGATTTGTTGGCGGGAG
GGACCTGGATGGGCATTACAAGGACAGGACGCTTTGGAGTGTTGACAAAC
GTCAGAACACCCACAGAAGATCTCTTAGCTGCCGCAGCAGCAAAAGTAAC
AGCAACAGCAACAGCACCGACAACAAAAGCAACAAAATTATCGGAGACAA
GGGCAGTTAGTTCGATTCCTGTGCAGCAGGGGAAGGAAGAGGAGAAAGAC
AAGGCGAAGGAGACAAATTTCGGAAGAAAAAGTCGAGGGCACTTGGTCTT
AGATTTCCTCGCTGACCCGGATCCCAACCTCTTGCCGATGACGTACGCTC
AAAGCCTAGCGTCTCTGGCCGGAAAGGAGGGCGGGTCGAGGACACCAGCA
GCATTAAAGGCATGTGAGTTTGCAGGCTACAACCTTCTGGTGGGCAATGT
GGGACGATCTGCACAAGAAGGAGGGGAAGAAGAAGAAGTGGAAATGGCCT
ACTACTCTAACTGCCTCCTCCCGGGGCAAGCCCAAAAACTGGAAGACAAT
CGTTTATATGCGATCAGCAACCGCTTGCTTGACGTACCCTGGGAAAAGGT
ACAAAGGGGAAAGAGGCTCTTCACTGAGTGTCTGACCGAGGGGGCACTGG
CAGCAGCAGCCGTGGAAAAGGGCGGGGAAGGGAGGGAAGATGAGGATGAG
GTGCTTGCTCATTTGTTACTAGATCGATTGCTGCATGATAACGAGCCTTG
CAGCCCAGCGACGGACACAGGATACCCTCTAGAATTTGAGAAGAAGCTTG
CCCAGATTTGTATTCCGGGGGTGGCATTACGGGGGGAGGAGGAGGAGGGG
AAGGAGGGAAAGGATGGAGGGGAAAAGGGGAGGGAAAGGTCGTCGTCAGT
GTTTGGCACGACGGCAAGTATTGTAGTGTTGGTGAGAAGAGATGGGCGGA
TGTTGTTTTACGAAAGGGGTTTAGAATGGGATGAGGCGAGGGAGACTCAT
GTGGGTGTCTGGTCGAGTGTCAGAAGGACGGAGGTGAAGCTCGCTTCTTG
A
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Coding sequence (CDS) from alignment at scaffold_12:677820..679220-

>mRNA_5184 ID=mRNA_5184|Name=jgi.p|Nanoce1779_2|639700|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at scaffold_12:677820..679220- (Nannochloropsis oceanica)
ATGTGTATTGTCTTCTTTCAAGCCTTCTCAACACCAGCAACAGTAGGAGT
ATCTACGGAAAGAACAGCAACATCGACAGAAATAGCAGCATCAGCGACAG
AAACAACAGCAGCAGGCAGCCAGGACGTGCATGCCGCTATTGCAAGGAGT
TACAAGCTCATCCTCGCCTCCAATCGTGACGAATTTCTCGTGCGCCGGAC
CCGTCGACCGCGCTTCTGGGATGACACCGACGGCGTGAACAATACGAGCA
CCAAGAATGAGGAAAAAAAAGGGGTGATGGTCGCACAGATGGAAAAGCCT
CATGTTGACGCACGCACAAACAGCAATACTACCACCGCGTTGTCCTCGTC
TTTCTCTCCATTTTCGCGCGTGTGGGCCGGAAAAGATTTGTTGGCGGGAG
GGACCTGGATGGGCATTACAAGGACAGGACGCTTTGGAGTGTTGACAAAC
GTCAGAACACCCACAGAAGATCTCTTAGCTGCCGCAGCAGCAAAAGTAAC
AGCAACAGCAACAGCACCGACAACAAAAGCAACAAAATTATCGGAGACAA
GGGCAGTTAGTTCGATTCCTGTGCAGCAGGGGAAGGAAGAGGAGAAAGAC
AAGGCGAAGGAGACAAATTTCGGAAGAAAAAGTCGAGGGCACTTGGTCTT
AGATTTCCTCGCTGACCCGGATCCCAACCTCTTGCCGATGACGTACGCTC
AAAGCCTAGCGTCTCTGGCCGGAAAGGAGGGCGGGTCGAGGACACCAGCA
GCATTAAAGGCATGTGAGTTTGCAGGCTACAACCTTCTGGTGGGCAATGT
GGGACGATCTGCACAAGAAGGAGGGGAAGAAGAAGAAGTGGAAATGGCCT
ACTACTCTAACTGCCTCCTCCCGGGGCAAGCCCAAAAACTGGAAGACAAT
CGTTTATATGCGATCAGCAACCGCTTGCTTGACGTACCCTGGGAAAAGGT
ACAAAGGGGAAAGAGGCTCTTCACTGAGTGTCTGACCGAGGGGGCACTGG
CAGCAGCAGCCGTGGAAAAGGGCGGGGAAGGGAGGGAAGATGAGGATGAG
GTGCTTGCTCATTTGTTACTAGATCGATTGCTGCATGATAACGAGCCTTG
CAGCCCAGCGACGGACACAGGATACCCTCTAGAATTTGAGAAGAAGCTTG
CCCAGATTTGTATTCCGGGGGTGGCATTACGGGGGGAGGAGGAGGAGGGG
AAGGAGGGAAAGGATGGAGGGGAAAAGGGGAGGGAAAGGTCGTCGTCAGT
GTTTGGCACGACGGCAAGTATTGTAGTGTTGGTGAGAAGAGATGGGCGGA
TGTTGTTTTACGAAAGGGGTTTAGAATGGGATGAGGCGAGGGAGACTCAT
GTGGGTGTCTGGTCGAGTGTCAGAAGGACGGAGGTGAAGCTCGCTTCTTG
A
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Synonyms
Publications