jgi.p|Nanoce1779_2|591662, mRNA_5183 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591662
Unique NamemRNA_5183
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length746
Alignment locationscaffold_12:677021..677766 +

Link to JBrowse

Properties
Property NameValue
TranscriptId591748
TrackFilteredModels2
ProteinId591662
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:677021..677766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591662gene_5183Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591662mRNA_5183-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5183CDS_5183Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5183 ID=mRNA_5183|Name=jgi.p|Nanoce1779_2|591662|organism=Nannochloropsis oceanica|type=mRNA|length=746bp
ACAGGTCCTTCGCCGGTGCGATGGACGCTGCTCCGATTCCACCATCGTCA
TCAGAATTATCATCCAAACCCCCAGCCCAAAGTAGCATCACGCCGCATGG
CCCACCGGCTCCACCCGCAGCTCCCTCCTTCGACAGACAACTTGTCCAAG
AAATCCCCTTGTTGCGCACACGCGCTGGTCCCCGTGATAGGGATGCGTGG
CTGGCGAGGGTCAAGGAAGAAATGCAAGCTCTCATAGCCCTGGTCCGGAT
AAACAAGGAGAAAGACAACGACTGGTTTACCATAAACCCCACCAATAAAA
CCTGCACGAGGTGGGAAGGCAAGTGCTGGACATACCACCAAGGCGTAAAA
TTTGAGTTTGACTTGCATTTCGAGGTTCCTGTATCATACCCCGCAACGTG
CCCCGACCTTGTCCTTCCTGAGCTCGATGGAAAGACGGCCAAGATATACC
GCGGGGGTCGTATTTGCTTGGACATCCATTTTCAGCCTTTATGGGCGCGG
AATGTGCCTAAGTTTGGCTTAGCTCATGCGTTAGCGTTGGGTTTGGGGCC
GTGGTTGTCTTTGGAAGTGCCTTCGTTGGTAGATGCACAGATTTTGCCAC
CGTCGGGGACGACGGTCAAGTAGTGAGAGATGGAGAGATGGGGGAGGGAG
AAAGGGATGTTTATTCTATAGTGAGTGCTGACAGATAGTAAAAATGGGAT
AAAGAAACAGAAAATATGTATCTTCAACGAGAAGAATTTTACAAAA
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protein sequence of jgi.p|Nanoce1779_2|591662

>mRNA_5183-protein ID=mRNA_5183-protein|Name=jgi.p|Nanoce1779_2|591662|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MDAAPIPPSSSELSSKPPAQSSITPHGPPAPPAAPSFDRQLVQEIPLLRT
RAGPRDRDAWLARVKEEMQALIALVRINKEKDNDWFTINPTNKTCTRWEG
KCWTYHQGVKFEFDLHFEVPVSYPATCPDLVLPELDGKTAKIYRGGRICL
DIHFQPLWARNVPKFGLAHALALGLGPWLSLEVPSLVDAQILPPSGTTVK
*
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mRNA from alignment at scaffold_12:677021..677766+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5183 ID=mRNA_5183|Name=jgi.p|Nanoce1779_2|591662|organism=Nannochloropsis oceanica|type=mRNA|length=746bp|location=Sequence derived from alignment at scaffold_12:677021..677766+ (Nannochloropsis oceanica)
ACAGGTCCTTCGCCGGTGCGATGGACGCTGCTCCGATTCCACCATCGTCA
TCAGAATTATCATCCAAACCCCCAGCCCAAAGTAGCATCACGCCGCATGG
CCCACCGGCTCCACCCGCAGCTCCCTCCTTCGACAGACAACTTGTCCAAG
AAATCCCCTTGTTGCGCACACGCGCTGGTCCCCGTGATAGGGATGCGTGG
CTGGCGAGGGTCAAGGAAGAAATGCAAGCTCTCATAGCCCTGGTCCGGAT
AAACAAGGAGAAAGACAACGACTGGTTTACCATAAACCCCACCAATAAAA
CCTGCACGAGGTGGGAAGGCAAGTGCTGGACATACCACCAAGGCGTAAAA
TTTGAGTTTGACTTGCATTTCGAGGTTCCTGTATCATACCCCGCAACGTG
CCCCGACCTTGTCCTTCCTGAGCTCGATGGAAAGACGGCCAAGATATACC
GCGGGGGTCGTATTTGCTTGGACATCCATTTTCAGCCTTTATGGGCGCGG
AATGTGCCTAAGTTTGGCTTAGCTCATGCGTTAGCGTTGGGTTTGGGGCC
GTGGTTGTCTTTGGAAGTGCCTTCGTTGGTAGATGCACAGATTTTGCCAC
CGTCGGGGACGACGGTCAAGTAGTGAGAGATGGAGAGATGGGGGAGGGAG
AAAGGGATGTTTATTCTATAGTGAGTGCTGACAGATAGTAAAAATGGGAT
AAAGAAACAGAAAATATGTATCTTCAACGAGAAGAATTTTACAAAA
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Coding sequence (CDS) from alignment at scaffold_12:677021..677766+

>mRNA_5183 ID=mRNA_5183|Name=jgi.p|Nanoce1779_2|591662|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_12:677021..677766+ (Nannochloropsis oceanica)
ATGGACGCTGCTCCGATTCCACCATCGTCATCAGAATTATCATCCAAACC
CCCAGCCCAAAGTAGCATCACGCCGCATGGCCCACCGGCTCCACCCGCAG
CTCCCTCCTTCGACAGACAACTTGTCCAAGAAATCCCCTTGTTGCGCACA
CGCGCTGGTCCCCGTGATAGGGATGCGTGGCTGGCGAGGGTCAAGGAAGA
AATGCAAGCTCTCATAGCCCTGGTCCGGATAAACAAGGAGAAAGACAACG
ACTGGTTTACCATAAACCCCACCAATAAAACCTGCACGAGGTGGGAAGGC
AAGTGCTGGACATACCACCAAGGCGTAAAATTTGAGTTTGACTTGCATTT
CGAGGTTCCTGTATCATACCCCGCAACGTGCCCCGACCTTGTCCTTCCTG
AGCTCGATGGAAAGACGGCCAAGATATACCGCGGGGGTCGTATTTGCTTG
GACATCCATTTTCAGCCTTTATGGGCGCGGAATGTGCCTAAGTTTGGCTT
AGCTCATGCGTTAGCGTTGGGTTTGGGGCCGTGGTTGTCTTTGGAAGTGC
CTTCGTTGGTAGATGCACAGATTTTGCCACCGTCGGGGACGACGGTCAAG
TAG
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Synonyms
Publications