jgi.p|Nanoce1779_2|529106, mRNA_5182 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529106
Unique NamemRNA_5182
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length657
Alignment locationscaffold_12:673719..674375 -

Link to JBrowse

Properties
Property NameValue
TranscriptId529192
TrackFilteredModels2
ProteinId529106
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:673719..674375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529106gene_5182Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5182CDS_5182Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529106mRNA_5182-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5182 ID=mRNA_5182|Name=jgi.p|Nanoce1779_2|529106|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
ATGCAGGTGGAGCGTGTCATGACACTGGAGAGGAAACAGCATGAGTTTGA
GCGGTTACGATTGGAGCAACAAACGCAAATAAAAGAAATGCAGGAGGTTA
TTTATATGCTGAAAACCCAGAGCGCGGCCTTGGCCCAAGCCAAGACGGAA
GCGGAGGAGGAAGTGTCGGTGGAGGCGAGGAAGGCAAACCTGGCCCTGCG
GACCACAGAGGAGGCGACGCTGAAGCTGGAGGGGGCGCAAAACAAAGCGA
ATGCTTTAACACGCCGGGCGGAGGATCTGGGTAAGGAGCTCGATACCGTT
GAAAAGGCACGTTTTTCGTTGCAGGAGCAAGTGAGTGGTCTGACGGGGAG
GCTGCAGAGAGTCCAGACGAAGCTGGAGGCAAGTTCGGAGGGAGCAGGAG
AGGGAAGAGGAGCAGCGGGAGCAGGACCTGTGGTTGGGGCTGTAGGTGGA
GGGAATGCGGCACAGAATGAGACGTTGCTGAAGCTGTTGAATTGCTCCGT
GTGTAACGTGAGGTGGAAGGATTGTGTCATCACCAAATGCTATCACTTGT
TTTGCCAGCAGTGTATCCAGAGCAACCTAAAAGTACGGAGTCGGAAGTGT
CCGGCGTGTGGGAAGCATTTTTCGGAGAATGATGTGAAGCCCATCTTTTT
GACGTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|529106

>mRNA_5182-protein ID=mRNA_5182-protein|Name=jgi.p|Nanoce1779_2|529106|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MQVERVMTLERKQHEFERLRLEQQTQIKEMQEVIYMLKTQSAALAQAKTE
AEEEVSVEARKANLALRTTEEATLKLEGAQNKANALTRRAEDLGKELDTV
EKARFSLQEQVSGLTGRLQRVQTKLEASSEGAGEGRGAAGAGPVVGAVGG
GNAAQNETLLKLLNCSVCNVRWKDCVITKCYHLFCQQCIQSNLKVRSRKC
PACGKHFSENDVKPIFLT*
back to top

mRNA from alignment at scaffold_12:673719..674375-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5182 ID=mRNA_5182|Name=jgi.p|Nanoce1779_2|529106|organism=Nannochloropsis oceanica|type=mRNA|length=657bp|location=Sequence derived from alignment at scaffold_12:673719..674375- (Nannochloropsis oceanica)
ATGCAGGTGGAGCGTGTCATGACACTGGAGAGGAAACAGCATGAGTTTGA
GCGGTTACGATTGGAGCAACAAACGCAAATAAAAGAAATGCAGGAGGTTA
TTTATATGCTGAAAACCCAGAGCGCGGCCTTGGCCCAAGCCAAGACGGAA
GCGGAGGAGGAAGTGTCGGTGGAGGCGAGGAAGGCAAACCTGGCCCTGCG
GACCACAGAGGAGGCGACGCTGAAGCTGGAGGGGGCGCAAAACAAAGCGA
ATGCTTTAACACGCCGGGCGGAGGATCTGGGTAAGGAGCTCGATACCGTT
GAAAAGGCACGTTTTTCGTTGCAGGAGCAAGTGAGTGGTCTGACGGGGAG
GCTGCAGAGAGTCCAGACGAAGCTGGAGGCAAGTTCGGAGGGAGCAGGAG
AGGGAAGAGGAGCAGCGGGAGCAGGACCTGTGGTTGGGGCTGTAGGTGGA
GGGAATGCGGCACAGAATGAGACGTTGCTGAAGCTGTTGAATTGCTCCGT
GTGTAACGTGAGGTGGAAGGATTGTGTCATCACCAAATGCTATCACTTGT
TTTGCCAGCAGTGTATCCAGAGCAACCTAAAAGTACGGAGTCGGAAGTGT
CCGGCGTGTGGGAAGCATTTTTCGGAGAATGATGTGAAGCCCATCTTTTT
GACGTGA
back to top

Coding sequence (CDS) from alignment at scaffold_12:673719..674375-

>mRNA_5182 ID=mRNA_5182|Name=jgi.p|Nanoce1779_2|529106|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_12:673719..674375- (Nannochloropsis oceanica)
ATGCAGGTGGAGCGTGTCATGACACTGGAGAGGAAACAGCATGAGTTTGA
GCGGTTACGATTGGAGCAACAAACGCAAATAAAAGAAATGCAGGAGGTTA
TTTATATGCTGAAAACCCAGAGCGCGGCCTTGGCCCAAGCCAAGACGGAA
GCGGAGGAGGAAGTGTCGGTGGAGGCGAGGAAGGCAAACCTGGCCCTGCG
GACCACAGAGGAGGCGACGCTGAAGCTGGAGGGGGCGCAAAACAAAGCGA
ATGCTTTAACACGCCGGGCGGAGGATCTGGGTAAGGAGCTCGATACCGTT
GAAAAGGCACGTTTTTCGTTGCAGGAGCAAGTGAGTGGTCTGACGGGGAG
GCTGCAGAGAGTCCAGACGAAGCTGGAGGCAAGTTCGGAGGGAGCAGGAG
AGGGAAGAGGAGCAGCGGGAGCAGGACCTGTGGTTGGGGCTGTAGGTGGA
GGGAATGCGGCACAGAATGAGACGTTGCTGAAGCTGTTGAATTGCTCCGT
GTGTAACGTGAGGTGGAAGGATTGTGTCATCACCAAATGCTATCACTTGT
TTTGCCAGCAGTGTATCCAGAGCAACCTAAAAGTACGGAGTCGGAAGTGT
CCGGCGTGTGGGAAGCATTTTTCGGAGAATGATGTGAAGCCCATCTTTTT
GACGTGA
back to top
Synonyms
Publications